These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8940#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 604 fasta sequence [GAATAAAGTTCGCTGAATGTCGTCTGTAGAATTTTGTGACTCAACTGACGCTAATGTTCAAAGAACTCAGGATGGATACAATCAATTCAATATTCTTTGTCCACGGTGTTCCAGTATTGTCCTTCGCAAGAATACAGCAAAGCTAGCCAACAAACCACACAACTTGCCCGTGTTTGCTAGAAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCAAGCTGCAAAAAATAAGTACATAATAAAGCACTATCCGAATGATGCTGTATCAATAGTATGGTTCGCCTCTGGGAAGAAATTCTACTTACTTAACGTTCACCAGTGTAAAATTGTCAGCAGACCAGTCCCAATACACAAAATTAATCAAGTTTTGTATTACTTACTATTAGAAGGATTATACTTTTA] [+] EMBL BF936528 [GAATAAAGTTCGCTGAATGTCGTCTGTAGAATTTTGTGACTCAACTGACGCTAATGTTCAAAGAACTCAGGATGGATACAATCAATTCAATATTCTTTGTCCACGGTGTTCCAGTATTGTCCTTCGCAAGAATACAGCAAAGCTAGCCAACAAACCACACAACTTGCCCGTGTTTGCTAGAAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCAAGCTGCAAAAAATAAGTACATAATAAAGCACTATCCGAATGATGCTGTATCAATAGTATGGTTCGCCTCTGGGAAGAAATTCTACTTACTTAACGTTCACCAGTGTAAAATTGTCAGCAGACCAGTCCCAATACACAAAATTAATCAAGTTTTGTATTACTTACTATTAGAAGGATTATACTTTTA] [+] EMBL AI976461 [GAATAAAGTTCGCTGAATGTCGTCTGTAGAATTTTGTGACTCAACTGACGCTAATGTTCAAAGAACTCAGGATGGATACAATCAATTCAATATTCTTTGTCCACGGTGTTCCAGTATTGTCCTTCGCAAGAATACAGCAAAGCTAGCCAACAAACCACACAACTTGCCCGTGTTTGCTAGAAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCAAGCTGCAAAAAATAAGTACATAATAAAGCACTATCCGAATGATGCTGTATCAATAGTATGGTTCGCCTCTGGGAAGAAATTCTACTTACTTAACGTTCACCAGTGTAAAATTGTCAGCAGAC ] consensusID : consensus_8940#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 495 fasta sequence [TGGATAATTACCTATCCCTCTGCCCTTCTAGCAAATCTGTCTTCCCAGGCACAAGTGGATCTTTTATTGGAGCTGAATGTGACATATGTTGGTAATCATGAGATTTTGGCCGAATGGAACAGCACAACTTGCCCGTGTTTGCTAGAAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCAAGCTGCAAAAAATAAGTACATAATAAAGCACTATCCGAATGATGCTGTATCAATAGTATGGTTCGCCTCTGGGAAGAAATTCTACTTACTTAACGTTCACCAGTGTAAAATT] [+] EMBL CD194592 [TGGATAATTACCTATCCCTCTGCCCTTCTAGCAAATCTGTCTTCCCAGGCACAAGTGGATCTTTTATTGGAGCTGAATGTGACATATGTTGGTAATCATGAGATTTTGGCCGAATGGAACAGCACAACTTGCCCGTGTTTGCTAGAAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCAAGCTGCAAAAAATAAGTACATAATAAAGCACTATCCGAATGATGCTGTATCAATAGTATGGTTCGCCTCTGGGAAGAAATTCTACTTACTTAACGTTCACCAGTGTAAAATT] [+] EMBL CD158007 [ AACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTG ] [+] EMBL CD158243 [ AACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACGGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTG ] [+] EMBL CD158138 [ AACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTGGTGTGTTAACGATATGTACGCTTTTGAAAATGTCGGATTTACAAACACCGTAAG ] [-] EMBL CD169960 [ GCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTGC ] consensusID : consensus_8940#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [TTCTCCTGTTCTTTTTAGCACAACTTGCCCGTGTTTGCTAGAAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTTTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCCACCTGCCAAAAATAAGTACATAATAAAGCCCTATCCGAATGATGCTGTATCAATAGTATGGTTCGCCTCTGGGAAGAAATTTTACTTACTTAACGTTCACCAGTGTAAAATTGTCAGCAGACCAGTCCCAATACACAAAATTAATCAAGTTTTGTATTACTTACTATTAGAAGGATTATACTTTTAT] [-] EMBL CD076251 [TTCTCCTGTTCTTTTTAGCACAACTTGCCCGTGTTTGCTAGAAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTTTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCCACCTGCCAAAAATAAGTACATAATAAAGCCCTATCCGAATGATGCTGTATCAATAGTATGGTTCGCCTCTGGGAAGAAATTTTACTTACTTAACGTTCACCAGTGTAAAATTGTCAGCAGACCAGTCCCAATACACAAAATTAATCAAGTTTTGTATTACTTACTATTAGAAGGATTATACTTTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8940#0 GAATAAAGTTCGCTGAATGTCGTCTGTAGAATTTTGTGACTCAACTGACGCTAATGTTCA 60 consensus_8940#2 ------------------------------------------------------------ consensus_8940#1 -----------------------------TGGATAATTACCTATCC--CTCTGCCCTTCT 29 consensus_8940#0 AAGAACTCAGGATGGATACAATCAATTCAATATTCTTTGTCCACGGTGTTCCAGTATTGT 120 consensus_8940#2 ------------------------------------------------------------ consensus_8940#1 AGCAAATCTGTCTTCCCAGGCACAAGTGGATCTTTTATTGGAGCTGAATGTGACATATGT 89 consensus_8940#0 CCTTCGCAAGAATACAGCAAAGCTAGCCAACAAACCACACAACTTGCCCGTGTTTGCTAG 180 consensus_8940#2 -----------------TTCTCCTGTTCTTTTTA--GCACAACTTGCCCGTGTTTGCTAG 41 consensus_8940#1 TGGTAATCATGAGAT--TTTGGCCGAATGGAACA--GCACAACTTGCCCGTGTTTGCTAG 145 * * *********************** consensus_8940#0 AAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTG 240 consensus_8940#2 AAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTTTG 101 consensus_8940#1 AAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTG 205 ********************************************************* ** consensus_8940#0 GTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATT 300 consensus_8940#2 GTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATT 161 consensus_8940#1 GTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATT 265 ************************************************************ consensus_8940#0 TCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGA 360 consensus_8940#2 TCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGA 221 consensus_8940#1 TCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGA 325 ************************************************************ consensus_8940#0 AGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCAAG 420 consensus_8940#2 AGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCCAC 281 consensus_8940#1 AGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCAAG 385 ********************************************************* * consensus_8940#0 CTGCAAAAAATAAGTACATAATAAAGCACTATCCGAATGATGCTGTATCAATAGTATGGT 480 consensus_8940#2 CTGCCAAAAATAAGTACATAATAAAGCCCTATCCGAATGATGCTGTATCAATAGTATGGT 341 consensus_8940#1 CTGCAAAAAATAAGTACATAATAAAGCACTATCCGAATGATGCTGTATCAATAGTATGGT 445 **** ********************** ******************************** consensus_8940#0 TCGCCTCTGGGAAGAAATTCTACTTACTTAACGTTCACCAGTGTAAAATTGTCAGCAGAC 540 consensus_8940#2 TCGCCTCTGGGAAGAAATTTTACTTACTTAACGTTCACCAGTGTAAAATTGTCAGCAGAC 401 consensus_8940#1 TCGCCTCTGGGAAGAAATTCTACTTACTTAACGTTCACCAGTGTAAAATT---------- 495 ******************* ****************************** consensus_8940#0 CAGTCCCAATACACAAAATTAATCAAGTTTTGTATTACTTACTATTAGAAGGATTATACT 600 consensus_8940#2 CAGTCCCAATACACAAAATTAATCAAGTTTTGTATTACTTACTATTAGAAGGATTATACT 461 consensus_8940#1 ------------------------------------------------------------ consensus_8940#0 TTTA- 604 consensus_8940#2 TTTAT 466 consensus_8940#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||