These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8967#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 747 fasta sequence [CCACCAGGGATACATTTCACTTGTACTAGCCATAAAACTTGGTGTTTTAATATGCATGGATTTAAATCCGATATTACATCATCTTCAATTTTGCCAATCTGTTCGTGAACTATATGAAGCCAATGGGATAGTTCTGTTGTCACAGTGCTAGGATGTGATGCTAATGTACTGGAGGCTAGTGAAGAGGAAAAACTTCGACTATATTCTTTATAAATATCCACAACTTCAAGTAAACTTTGAACAGGTCGTGGTGATTGAACAATTTCTAAAATTTCAGGGAATTGTGATCGAACTAACAG-TTTGTCTGACCCTAATTCTTGCATATTCAATGCAAATGAAGTGGCTGGTGGAATGAAAATCAATAGTCGTCTAGTAAAATGATCAGTTTCAGTAATCCAAAACTGGTAAGAATCTTTAGACGTAGACATGTGACTATCTTCTTGTAGTTTAACAGCTGGAGGAATAAGAATCCTAATACCTGGCAAGGGAAGTAACGACGTTTGAGCAATTAATGATGAATTTTCTCCCTGTTCAATATTACCAGACACATGGGTTTTAACCAATTGTAAAATCATTCGTGTTTTAGGCATTAGTGTTAGAGAAATAGCATCATCATTCAACGACCATGTTGTAGGAGATTTTATAACACACTGCCATTGTGTAGAACTTGTATGAAATGGTGAGGATTGTGATCCAGGTTCTAGTTGAGTTGTAATATATCGTTGTAGTGAAAACTTAGCAGATTCT] [-] EMBL CD093013 [CCACCAGGGATACATTTCACTTGTACTAGCCATAAAACTTGGTGTTTTAATATGCATGGATTTAAATCCGATATTACATCATCTTCAATTTTGCCAATCTGTTCGTGAACTATATGAAGCCAATGGGATAGTTCTGTTGTCACAGTGCTAGGATGTGATGCTAATGTACTGGAGGCTAGTGAAGAGGAAAAACTTCGACTATATTCTTTATAAATATCCACAACTTCAAGTAAACTTTGAACAGGTCGTGGTGATTGAACAATTTCTAAAATTTCAGGGAATTGTGATCGAACTAACAG TTTGTCTGACCCTAATTCTTGCATATTCAATGCAAATGAAGTGGCTGGTGGA ] [-] EMBL CD092915 [ CACTTGTACTAGCCATAAAACTTGGTGTTTTAATATGGATGGATTTAAATCCGATATTACATCATCTTCAATTTTGCCAATCTGTTCGTGAACTATATGAAGCCAATGGGATAGTTCTGTTGTCACAGTGCTAGGATATGATGCTAATGTACTGGAGGCTAGTGAAGAGGAAAAACTTCGACTATATTCTTTATAAATATCCACAACTTCAAGTAAACTTTGAACAGGTCGTGGTGATTGAACAATTTCT AAATTTCAGGGAATTGTGATCGAACTAACAG TTTGTCTGACCCTAATTCTTGCATATTCAATGCAA ] [+] EMBL CD167230 [ GTGG GATTGAACAATTTCTAAAATTTCA GGAA TGTGATCGAACTAACAGNTTTGTCTGACCCTAATTCTTGCATATTCAATGCAAATGAAGTGGCTGGTGGAATGAAAATCAATAGTCGTCTAGTAAAATGATCAGTTTCAGTAATCCAAAACTGGTAAGAATCTTTAGACGTAGACATGTGACTATCTTCTTGTAGTTTAACAGCTGGAGGAATAAGAATCCTAATACCTGGCAAGGGAAGTAACGACGTTTGAGCAATTAATGATGAATTTTCTCCCTGTTCAATATTACCAGACACATGGGTTTTAACCAATTGTAAAATCATTCGTGTTTTAGGCATTAGTGTTAGAGAAATAGCATCATCATTCAACGACCATGTTGTAGGAGATTTTATAACACACTGCCATTGTGTAGAACTTGTATGAAATGGTGAG ] [+] EMBL CD160107 [ agAATCAATAGTCGTCTAGTATAATGATCAGTTTCAGTAATCCAAAACTGGTAAGAATCTTTAGACGTAGACATGTGACTATCTTCTTGTAGTTTAACAGCTGGAGGAATAAGAATCCTAATACCTGGCAAGGGAAGTAACGACGTTTGAGCAATTAATGATGAATTTTCTCCCTGTTCAATATTACCAGACACATGGGTTTTAACCAATTGTAAAATCATTCGTGTTTTAGGCATTAGTGTTAGAGAAATAGCATCAACATTCAACGACCATGTTGTAGGAGATTTTATTACACACTGCCATTGTGTAGAACTTGTATGAAATGGTGAGGATTGTGATCCAGGTTCTAGTTGAGTTGTAATATATCGTTGTAGTGAAAACTTAGCAGATTCT] consensusID : consensus_8967#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 568 fasta sequence [ATTGAATATGATGTAATATCGATATTTAAATCCATCCATATTAAAACACCAAGGTTTATGGATAGGACTACCGAGATGAATCCCTGGAAGATTCTACTATTGATACTCTAGCGAATGTTGAATTAAACCTTCGTTCACCATGTTCAACATATTGAAATCCCTGTACGAATTACTATTCCATCATTAAATCAATTAGATAACAAAGAAATAACAACTTCACAACCATCGTTCTACTTATTAAATTTCTCTT-GGATTCATCTTTTTGCTATGATTGTAATTACATTGTTTATTGCGATTATCATACACATTATATTTCGCAGTGAGACATTGATAAGTTCTTCAAATAATTCAAACATTGGAAAATATTCACCTGGTCCTCTACCTCCATTGGTCAAAGGAGGAATAAGTCGATCACCTCCTGGTCGACAATTATGGAGTCAAAATTTTATTCCTGGTGGAAGTCCTAATACAATACGTCAGCCATTTTCAACATTTGATGGTCTACGTTCATCGAATGTTTCGTCATCTCCAATCCATCCACAAAATCTTTCCTCAAACACGTCATATA] [+] EMBL CD180852 [ATTGAATATGATGTAATATCGATATTTAAATCCATCCATATTAAAACACCAAGGTTTATGGATAGGACTACCGAGATGAATCCCTGGAAGATTCTACTATTGATACTCTAGCGAATGTTGAATTAAACCTTCGTTCACCATGTTCAACATATTGAAATCCCTGTACGAATTACTATTCCATCATTAAATCAATTAGATAACAAAGAAATAACAACTTCACAACCATCGTTCTACTTATTAAATTTGTCTTCGGATTCATCTTTTTGCTATGAATGAAATTACATTGATTATTGCGATTATCATACACATTATATTTCGCAGCGAGACATTGATAAATTCTTCATATAATTCAAACATTGGAAAATATTCACCTGGCCCTC ] [-] EMBL CD191810 [ ATTAAATTTCTCTT GGATTCATCTTTTTGCTATGATTGTAATTACATTGTTTATTGCGATTATCATACACATTATATTTCGCAGTGAGACATTGATAAGTTCTTCAAATAATTCAAACATTGGAAAATATTCACCTGGTCCTCTACCTCCATTGGTCAAAGGAGGAATAAGTCGATCACCTCCTGGTCGACAATTATGGAGTCAAAATTTTATTCCTGGTGGAAGTCCTAATACAATACGTCAGCCATTTTCAACATTTGATGGTCTACGTTCATCGAATGTTTCGTCATCTCCAATCCATCCACAAAATCTTTCCTCAAACACGTCATATA] [-] EMBL CD191921 [ ATTAAATTTCTCTT GGATTCATCTTTTTGCTATGATTGTAATTACATTGTTTATTGCGATTATCATACACATTATATTTCGCAGTGAGACATTGATAAGTTCTTCAAATAATTCAAACATTGGAAAATATTCACCTGGTCCTCTACCTCCATTGGTCAAAGGAGGAATAAGTCGATCACCTCCTGGTCGACAATTATGGAGTCAAAATTTTATTCCTGGTGGAAGTCCTAATACAATACGTCAGCCATTTTCAACATTTGATGGTCTACGTTCATCGAATGTTTCGTCATCTCCAATCCATCCACAAAATCTTTCCTCAAACACGTCATATA] [-] EMBL CD134794 [ ATTAAATTTCTCTT GGATTCATCTTTTTGCTATGATTGTAATTACATTGTTTATTGCGATTATCATACACATTATATTACACAGTGAGACATTGATAAGTTCTTCAAATAATTCAAACATTGGAAAATATTCACCTGGTCCTCTACCTCCATTGGTCAAAGGAGGAATAAGTCGATCACCTCCTGGTCGACAATTATGGAGTCAAAATTTTATTCCTGGTGGAAGTCCTAATACAATACGTCAGCCATTTTCAACATTTGATGGTCTACGTTCATCGAATGTTTCGTCATCTCCAATCCATCCACAAAATCTTTCCTCAAACACGTCATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8967#0 CCACCAGGGATACATTTCACTTGTACTAGCCATAAAACTTGGTGTTTTAATATGCATGGA 60 consensus_8967#1 -------------------------------ATTGAATATGATGT---AATATCGAT--A 24 ** ** ** *** ***** ** * consensus_8967#0 TTTAAATCCG---ATATTACATCATCTTCAATTTTGCCAATCTGTTCGTGAACTATATGA 117 consensus_8967#1 TTTAAATCCATCCATATTAAAACACCA--AGGTTTATGGATAGGACT---ACCGAGATGA 79 ********* ****** * ** * * *** ** * * * * **** consensus_8967#0 AGCCAATGGGATAGTTCTGTTGTCACAGTGCTAGGATGTGATGCTAATGTACTGGAGGCT 177 consensus_8967#1 ATCC--CTGGAAGATTCTACTATTGATACTCTAGCGAATGTTG--AATTAAACCTTCGTT 135 * ** *** **** * * **** ** ** *** * * * consensus_8967#0 AGTGAAGAGGAAAAACTTCGACTATATTCTTTATAAATATCCACAACTTCAAGTAAACTT 237 consensus_8967#1 CACCATGTTCAACATATTGAAAT---CCCTGTACGAATTACTATTCCATCAT-TAAA--T 189 * * ** * ** * * ** ** *** * * * *** **** * consensus_8967#0 TGAACAGGTCGTGGTGATTGAACAATTTCTAAAATTTCAGGGAATTGTGATCGAACTAAC 297 consensus_8967#1 CAATTAGATAACAAAGAAATAACAACTTCACAACCATCG-----TTCTACTT--ATTA-- 240 * ** * ** ***** *** ** ** ** * * * ** consensus_8967#0 AGTTTGTCTGACCCTAATTCTTGCATATTCAATGCAAATGAAGTGGCTGGTGGAATGAAA 357 consensus_8967#1 AATTTCTCTTGGATTCATCTTTTTGCTATGATTGTAATTACATTGTTTATTGCGATTATC 300 * *** *** * ** ** * * ** ** * * ** * ** ** * consensus_8967#0 ATCAATAGT-CGTCTAGTAAAATGATCAGTTTCAGTAATCCAAAACTGGTAAGAATCTTT 416 consensus_8967#1 ATACACATTATATTTCGCAGTGAGACATTGATAAGTTCTTCAAA--TAATTCAAACATTG 358 ** * * * * * * * ** * *** * **** * * ** ** consensus_8967#0 AGACGTAGACATGTGACTATCTTCTTGTAGTTTAACAGCTGGAGGAATAAGAATCCTAAT 476 consensus_8967#1 GAAAATATTCACCTGGTCCTCTACCTCCA--TTGGTCAAAGGAGGAATAAGTCGATCACC 416 * ** ** ** *** * * * ** *********** * consensus_8967#0 ACCTGGCAAGGGAAGTAACGACGTTTGAGCAATTAATGATGAATTTTCTCCCTGTTCAAT 536 consensus_8967#1 TCCTGGT-----------CGACAATTATGGAGTCAA-----AATTTTATTCCTGGTGGAA 460 ***** **** ** * * * ** ****** * **** * * consensus_8967#0 ATTACCAGACACATGGGTTTTAACCAATTGTAAAATCATTCGTGTTTTAGGCATTAGTGT 596 consensus_8967#1 GT--CCTAATACA-ATACGTCAGCCATTTTCAACAT--TTGATGGTCTA--------CGT 507 * ** * *** * * *** ** ** ** ** ** * ** ** consensus_8967#0 TAGAGAAATAGCATCATCATTCAACGACCATGTTGTAGGAGATTTTATAACACACTGCCA 656 consensus_8967#1 TCATCGAAT-GTTTCGTCATCTCCAATCCAT-CCACAAAATCTTTCCTCAAACAC----G 561 * *** * ** **** **** * * *** * * **** consensus_8967#0 TTGTGTAGAACTTGTATGAAATGGTGAGGATTGTGATCCAGGTTCTAGTTGAGTTGTAAT 716 consensus_8967#1 TCATATA----------------------------------------------------- 568 * * ** consensus_8967#0 ATATCGTTGTAGTGAAAACTTAGCAGATTCT 747 consensus_8967#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||