These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 648 fasta sequence [TTTCAGGGTCGCTTTACTAGGATTACTGCATTTCGTAACCAGGTGACTTGGTTGACTTTCAAAAAGCCTTGATTAAGTAGCTAAATAATGCCTGGTTACAAACAAGAAATGCCTCCTCCCGGAGGTTTCGCTCCAATCGATGTCTCCAGAAAGATGCCAAAAGGCTATGTACACGGTCTTATAACACTTGGTGCATTGTATACCTCAACATATGTGGGCCTTAAAGTTCTGAAATATATGAAAGGAAAACAAACTAAAATTAATAGAGAAGATCAAGAATGTCGGATTGCTCTTGCTCCTTTCATTATAGCTGAACAAGAGCGATTATACTTGAAACAATTACGAAAAAACCGCGAATACGAACAGAATTTAATGGGTGATGTTGCAGGCTGGAAAATTGGTCATTGGTTTGACTACCCGGTTTATCATAACCCTCGAGGTTTATGGTGTGATCCGGATATTAATGAGTTCTATGCTCATGTTGCTGATTGCGATAAAGATTTGAGGCGTAAAGTCCGATATCGTTACTCTTAAGTTGTGCTGGTGGCGGGTGTTTGGAAGCACTTCTTATTTTTAAAGGACTGATAATTTGAATTGTAGTTAAATATGTACTAGATCAAATACAAATTTACTGTTGAGACCATTGCT] [-] EMBL CD155617 [TTTCAGGGTCGCTTTACTAGGATTACTGCATTTCGTAACCAGGTGACTTGGTTGACTTTCAAAAAGCCTTGATTAAGTAGCTAAATAATGCCTGGTTACAAACAAGAAATGCCTCCTCCCG ] [+] EMBL CD083495 [ cgAGGCTTGATTAAGTAGCTAAATAATGCCTGGTTACAAACAAGAAATGCCTCCTCCCGGAGGTTTCGCTCCAATCGATGTCTCCAGAAAGATGCCAAAAGGCTATGTACACGGTCTTATAACACTTGGTGCATTGTATACCTCAACATATGTGGGCCTTAAAGTTCTGAAATATATGAAAGGAAAACAAACTAAAATTAATAGAGAAGATCAAGAATGTCGGATTGCTCTTGCTCCTTTCATTATAGCTGAACAAGAGCGATTATACTTGAAACAATTACGAAAAAACCGCGAATACGAACAGAATTTAATGGGTGATGTTGCAGGCTGGAAAATTGGTCATTGGTTTGACTACCCGGTTTATCATAACCCTCGAGGTTTATGGTGTGATCCGGATATNTATGAGTTCTATGCTCATGTTGCTGATTGCGATAAAGACTTGAGGCGTAAAGT ] [-] EMBL CD146059 [ ATGTACACGGTCTTATAACACTTGGTGCATTGTATACCTCAACATATGTGGGCCTTAAAGTTCTGAAATATATGAAAGGAAAACAAACTAAAATTAATAGAGAAGATCAAGAATGTCGGATTGCTCTTGCTTCTTTCATTATAGCTGAACAAGAGCGATTATACTTGAAACAATTACGAAAAAACCGCGAATACGAACAGAATTTAATGGGTGATGTTGCAGGCTGGAAAATTGGTCATTGGTTTGACTACCCGGTTTATCATAACCCTCGAGGTTTATGGTGTGATCCGGATATTAATGAGTTCTATGCTCATGTTGCTGATTGCGATAAAGATTTGAGGCGTAAAGTCCGATATCGTTACTCTTAAGTTGTGCTGGTGGCGGG ] [-] EMBL CD144418 [ TATATGAAAGGAAAACAAACTAAAATTNATAGAGAAGATCAAGAATGTCGGATTGCTCTNGCTCCTTTCATNATAGCTGAACAAGAGCGATTATACTTGAAACAATTACGAAAAAACCGCGAATACGAACAGAATNTAATGGGTGATGTTGCAGGCTGGAAAATTGGTCATTGGTTTGACTACCCGGTTTATCATAACCCTCGAGGTTTATGGTGTGATCCGGATATTAATGAGTTCTATGCTCATGTTGCTGATTGCGATAAAGATTTGAGGCGTAAAGTCCGATATCGTTACTCTTA ] [+] EMBL CD169626 [ CAGGCTGGAAAATTGGTCATTGGTTTGACTACCCGGTTTATCATAACCCTCGAGGTTTATGGTGTGATCCGGATATTAATGAGTTCTATGCTCATGTTGCTGATTGCGATAAAGATTTGAGGCGTAAAGTCCGATATCGTTACTCTTAAGTTGTGCTGGTGGCGGGTGTTTGGAAGCACTTCTTATTTTTAAAGGACTGATAATTTGAATTGTAGTTAAATATGTACTAGATCAAATACAAATTTACTGTTGAGACCATTGCT] consensusID : consensus_8973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 254 fasta sequence [GACGTCTGATTTCAGGGTCGCTTTACTAGGATTACTGTAATCAGACTTTACATACTGACTTTTTGTTTGTTGACAAAAACAGACTTAAGGCATATGAATTCAGTGTAACACCTGGCATTTCGTAACCAGGTGACTTGGTTGACTTTCAAAAAGCCTTGATTAAGTAGCTAAATAATGCCTGGTTACAAACAAGAAATGCCTCCTCCCGGGGGTTTCGCTCCAATCGATGTCTCCAGAAAGATGCCAAAAGGCTA] [+] EMBL CD134373 [GACGTCTGATTT AGGGTCGCTTTACTAGGATTACTGTAATCAGACTTTACATACTGACTTTTTGTTTGTTGACAAAAACAGACTTAAGGCATATGAATTCAGTGTAACACCTGGCATTTCGTAACCAGGTGACTTGGTTGACTTTCAAAAAGCCTTGATTAAGTAGCTAAATAATGCCTGGTTACAAACAAGAAATGCCTCCTCCCGGGGGTTTCGCTCCAATCGATGTCTCCAGAAAGATGCCAAAAGGCTA] [+] EMBL CD137925 [ CGTCTGATTTCAGGGTCGCTTTACTAGGATTACTGTAATCAGACTTTACATACTGACTTTTTGTTTGTTGACAAAAACAGACTTAAGGCATATGAATTCAGTGTAACACCTGGCATTTCGTAACCAGGTGACTTGGTTGACTTTCAAA ] [+] EMBL CD138021 [ CGTCTGATTTCAGGGTCGCTTTACTAGGATTACTGTAATCAGACTTTACATACTGACTTTTTGTTTGTTGACAAAAACAGACTTAAGGCATATGAATTCAGTGTAACACCTGGCATTTCGTAACCAGGTGACTTGGTTGACTTTCAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8973#0 ------------------------------------------------------------ consensus_8973#1 GACGTCTGATTTCAGGGTCGCTTTACTAGGATTACTGTAATCAGACTTTACATACTGACT 60 consensus_8973#0 -----------------------TTTCAGG---GTCGCTTTACTAGGATTACTG-CATTT 33 consensus_8973#1 TTTTGTTTGTTGACAAAAACAGACTTAAGGCATATGAATTCAGTGTAACACCTGGCATTT 120 ** *** * ** * * * *** ***** consensus_8973#0 CGTAACCAGGTGACTTGGTTGACTTTCAAAAAGCCTTGATTAAGTAGCTAAATAATGCCT 93 consensus_8973#1 CGTAACCAGGTGACTTGGTTGACTTTCAAAAAGCCTTGATTAAGTAGCTAAATAATGCCT 180 ************************************************************ consensus_8973#0 GGTTACAAACAAGAAATGCCTCCTCCCGGAGGTTTCGCTCCAATCGATGTCTCCAGAAAG 153 consensus_8973#1 GGTTACAAACAAGAAATGCCTCCTCCCGGGGGTTTCGCTCCAATCGATGTCTCCAGAAAG 240 ***************************** ****************************** consensus_8973#0 ATGCCAAAAGGCTATGTACACGGTCTTATAACACTTGGTGCATTGTATACCTCAACATAT 213 consensus_8973#1 ATGCCAAAAGGCTA---------------------------------------------- 254 ************** consensus_8973#0 GTGGGCCTTAAAGTTCTGAAATATATGAAAGGAAAACAAACTAAAATTAATAGAGAAGAT 273 consensus_8973#1 ------------------------------------------------------------ consensus_8973#0 CAAGAATGTCGGATTGCTCTTGCTCCTTTCATTATAGCTGAACAAGAGCGATTATACTTG 333 consensus_8973#1 ------------------------------------------------------------ consensus_8973#0 AAACAATTACGAAAAAACCGCGAATACGAACAGAATTTAATGGGTGATGTTGCAGGCTGG 393 consensus_8973#1 ------------------------------------------------------------ consensus_8973#0 AAAATTGGTCATTGGTTTGACTACCCGGTTTATCATAACCCTCGAGGTTTATGGTGTGAT 453 consensus_8973#1 ------------------------------------------------------------ consensus_8973#0 CCGGATATTAATGAGTTCTATGCTCATGTTGCTGATTGCGATAAAGATTTGAGGCGTAAA 513 consensus_8973#1 ------------------------------------------------------------ consensus_8973#0 GTCCGATATCGTTACTCTTAAGTTGTGCTGGTGGCGGGTGTTTGGAAGCACTTCTTATTT 573 consensus_8973#1 ------------------------------------------------------------ consensus_8973#0 TTAAAGGACTGATAATTTGAATTGTAGTTAAATATGTACTAGATCAAATACAAATTTACT 633 consensus_8973#1 ------------------------------------------------------------ consensus_8973#0 GTTGAGACCATTGCT 648 consensus_8973#1 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||