These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8974#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 595 fasta sequence [GCGGGATATTTGAGGTCCTGACGGTTATGGTGAGATATGGGCTTGCTGCTCAGGAGAGGTCATTTTCACCTTCAGAAAGCTTTAGTCGAGTATCATGTGTGAAAAGGTCACTCATGAAAGGAAAATGTCGAAGTTTGTCTGCTCTAGCCCAGCCAAAATTCA-CTGACGCTCGTCATTTTAACTCTCTCACAGCATGCTCTGTGCAAGTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCGATAGTCTGCGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAATAGAGACGAACCTGTCAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTACAGGACTATGCATCTCCTAAACCCAGCCTTGTACCTGACAGTATTTCTATGTACACTAATATCATCGGGGGTCGCACAATTTGGTAAATTCTATTCAAGTCGTAAATGGAACATCATAAACTAAACTCCTGTTCGTTTGCTTGGCATGGACAAAATGATCTCTATTGTTTATGTCATTCCTTTGTGATTGCACTGATAATATTTCGTAA] [+] EMBL CD134124 [GCGGGATATTTGAGGTCCTGACGGTTATGGTGAGATATGGGCTTGCTGCTCAGGAGAGGTCATTTTCACCTTCAGAAAGTTTTAGTCGAGTATCATGTGTGAAAAGGTCACCCATGAAAGGAAAATGTCGAAGTTTGTCTGCTCTAGCCCAGCCAAAATTCC CTGACGCTCGTCATTTCAACTCTCTCACAGCATGCTGTGTGCAAGTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCGATAGTCTGCGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAACAGAGACGAACCTGTTAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTACAGGACTATGCATCTCCTAAACCCAGCCTTGTACCTGACAGTATTTCTATGTACACTAATATCATCGGGGGTCGCACAATTTGGTNAATTCTATTNCAGTCGTAAATGGAACATCATAAACTAAACTCCTGTTCGTTTG ] [-] EMBL CD151772 [ GGGATATTTGGGGTCCTCACGGTTATGGTGAGATATGGGCTTGCTGCTCAGGACAGGTCATTTTCACCTTCAGAAAGCTTTAATCGAGTATCATGTGTGAAAAGGTCACTCATGAAAGGAAAATGTCGAAGTTTGTCTGCTTTAGCCCAGCCAAAATTCATCTGACGCTCGTCATTTTAACTCTCTCA ] [+] EMBL CD155750 [ TCACCTTCAGAAAGCTTTAGTCGAGTATCATGTGTGAAAAGGTCACTCATGAAAGGAAAATGTCGAAGTTTGTCTGCTCTAGCCCAGCCAAAATTCA CTGACGCTCGTCATTTTAACTCTCTCACAGCATGCTCTGTGCAAGTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCGATAGTCTGCGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAATAGAGACGAACCTGTCAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTACAGGACTATGCATCTCCTAAACCCAGCCTTGTACCTGACAGTATTTCTATGTACACTAATATCATCGGGGGTCGCACAATTTGGTAAATTCTATTCAAGTCGTANATGGAATATCA ] [-] EMBL CD155616 [ CACCTTCAGAAAGCTTTAGTCGAGTATCATGTGTGAAAAGGTCACTCATGAAAGGAAAATGTCGAAGTTTGTCTGCTCTAGCCCAGCCAAAATTCA CTGACGCTCGTCATTTTAACTCTCTCACAGCATGCTCTGTGCAAGTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCGATAGTCTGCGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAATAGAGACGAACCTGTCAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTACAGG ] [-] EMBL CD155564 [ CACCTTCAGAAAGCTTTAGTCGAGTATCATGTGTGAAAAGGTCACTCATGAAAGGAAAATGTCGAAGTTTGTCTGCTCTAGCCCAGCCAAAATTCA CTGACGCTCGTCATTTTAACTCTCTCACAGCATGCTCTGTGCAAGTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCGATAGTCTGCGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAATAGAGACGAACCTGTCAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTACAGG ] [-] EMBL CD141373 [ TACAAATAAACAGAGGCGGACCTGTTAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTACAGGACTATGCATCTCCTAAACCCAGCCTTGTACCTGACAGTATTTCTATGTACACTAATATCATCGGGGGTCGCACAATTTGGTAAATTCTATTCAAGTCGTAAATGGAACATCATA ] [-] EMBL CD086626 [ ATTTCTATGTACACTAATATCATCGGGGGTCGCACAATTTGGTAAATTCTATTCAAGTCGTAAATGGAATATCATAAACTAAACTCCTGTTCGTTTGCTTGGCATGGACAAAATGATCTCTATTGTTTATGTCATTCCTTTGTGATTGCACTGATAATATTTCGTAA] consensusID : consensus_8974#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [TTTGGGGTCCTGACGGTTATGGTGAGATATGGGCTTGCTGCTCAGGAGAGGTCATTTTCACCTTCAGAAAGCTTTAGTCGAGTATCATGTGTGAAAAGGTCACTCATGAAAGGAAAATGTCGAAGTTTGTCTGCTCTAGGTAATCGTACATGCATGAAAATATTATCTCGTAGCCCAGCCAAAATTCACTGACGCTCGTCATTTTAACTCTCTCACAGCATGCTCTGTGCAAGTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCGATAGTCTGCGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAATAGAGACGAACCTGTCAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTACAGGACTATGCATCTCCTAAACCCAGCCTTGTACCTCACAGTATTTCTATGTA] [+] EMBL CD197471 [TTTGGGGTCCTGACGGTTATGGTGAGATATGGGCTTGCTGCTCAGGAGAGGTCATTTTCACCTTCAGAAAGCTTTAGTCGAGTATCATGTGTGAAAAGGTCACTCATGAAAGGAAAATGTCGAAGTTTGTCTGCTCTAGGTAATCGTACATGCATGAAAATATTATCTCGTAGCCCAGCCAAAATTCACTGACGCTCGTCATTTTAACTCTCTCACAGCATGCTCTGTGCAAGTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCGATAGTCTGCGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAATAGAGACGAACCTGTCAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTACAGGACTATGCATCTCCTAAACCCAGCCTTGTACCTCACAGTATTTCTATGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8974#0 GCGGGATATTTGAGGTCCTGACGGTTATGGTGAGATATGGGCTTGCTGCTCAGGAGAGGT 60 consensus_8974#1 --------TTTGGGGTCCTGACGGTTATGGTGAGATATGGGCTTGCTGCTCAGGAGAGGT 52 **** *********************************************** consensus_8974#0 CATTTTCACCTTCAGAAAGCTTTAGTCGAGTATCATGTGTGAAAAGGTCACTCATGAAAG 120 consensus_8974#1 CATTTTCACCTTCAGAAAGCTTTAGTCGAGTATCATGTGTGAAAAGGTCACTCATGAAAG 112 ************************************************************ consensus_8974#0 GAAAATGTCGAAGTTTGTCTGCTCTAG--------------------------------- 147 consensus_8974#1 GAAAATGTCGAAGTTTGTCTGCTCTAGGTAATCGTACATGCATGAAAATATTATCTCGTA 172 *************************** consensus_8974#0 -CCCAGCCAAAATTCACTGACGCTCGTCATTTTAACTCTCTCACAGCATGCTCTGTGCAA 206 consensus_8974#1 GCCCAGCCAAAATTCACTGACGCTCGTCATTTTAACTCTCTCACAGCATGCTCTGTGCAA 232 *********************************************************** consensus_8974#0 GTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCG 266 consensus_8974#1 GTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCG 292 ************************************************************ consensus_8974#0 ATAGTCTGCGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAAT 326 consensus_8974#1 ATAGTCTGCGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAAT 352 ************************************************************ consensus_8974#0 AGAGACGAACCTGTCAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTA 386 consensus_8974#1 AGAGACGAACCTGTCAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTA 412 ************************************************************ consensus_8974#0 CAGGACTATGCATCTCCTAAACCCAGCCTTGTACCTGACAGTATTTCTATGTACACTAAT 446 consensus_8974#1 CAGGACTATGCATCTCCTAAACCCAGCCTTGTACCTCACAGTATTTCTATGTA------- 465 ************************************ **************** consensus_8974#0 ATCATCGGGGGTCGCACAATTTGGTAAATTCTATTCAAGTCGTAAATGGAACATCATAAA 506 consensus_8974#1 ------------------------------------------------------------ consensus_8974#0 CTAAACTCCTGTTCGTTTGCTTGGCATGGACAAAATGATCTCTATTGTTTATGTCATTCC 566 consensus_8974#1 ------------------------------------------------------------ consensus_8974#0 TTTGTGATTGCACTGATAATATTTCGTAA 595 consensus_8974#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||