These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8978#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 626 fasta sequence [CGTGGGCACTCCAATTGAAGAGTTTGATCCTGGCTCAGCCTGAACGCTGGCGGCGTGGCTAAGACATGCAAGTCGTACGGGGCCCGCAAGGGCCCAGTGGCGGACGGGTGAGTAATGAATCGCTAACGTGCCCCGATCCCTGGGATAGCCGGCCGAAAGGCCGGGTAATACCAGATGACGTGACCGCAGGGCATCCTGTGGTCCCCAAAGGGAAACCGGTCCGGGAGCGGGCGATTTCGTATCAGCTAGTTGGTGGGGTAACGGCCCACCAAGGCGACGACGCGTAGCTGGTCTGAGAGGACGGCCAGCCACATTGGGACTGAGACACTGCCCAGACTCCTACGGGGGGCTGCAGTAACGAATCTTCCGCAATGCGCGCAAGCGTGACGGAGCGACGCCGCGTGGAGGTTAAGTCCTTCGGGATGTAAACTCCTGTCAGGGGTTACCAAGTTCTGAGGAGCCCCAGAGGAAGGCACGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGTGCCGAGCGTTAGGCGGAATCACTGGGCTTAAAGCGCGTGTAGGCGGGTCGTTAAGTGTCCGCGTGAAATCCCACGGCTCAACCGTGGAACTGCCGGGCATACTGGCGACCTT] [+] EMBL CD164413 [CGTGGGCACTCCAATTGAAGAGTTTGATCCTGGCTCAGCCTGAACGCTGGCGGCGTGGCTAAGACATGCAAGTCGTACGGGGCCCGCAAGGGCCCAGTGGCGGACGGGTGAGTAATGAATCGCTAACGTGCCCCGATCCCTGGGATAGCCGGCCGAAAGGCCGGGTAATACCAGATGACGTGACCGCAGGGCATCCTGTGGTCCCCAAAGGGAAACCGGTCCGGGAGCGGGCGATTTCGTATCAGCTAGTTGGTGGGGTAACGGCCCACCAAGGCGACGACGCGTAGCTGGTCTGAGAGGACGGCCAGCCACATTGGGACTGAGACACTGCCCAGACTCCTACGGGGGGCTGCAGTAACGAATCTTCCGCAATGCGCGCAAGCGTGACGGAGCGACGCCGCGTGGAGGTTAAGTCCTTCGGGATGTAAACTCCTGTCAGGGGTTACCAAGTTCTGAGGAGCCCCAGAGGAAGGCACGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGTGCCGAGCGTTAGGCGGAATCACTGGGCTTAAAGCGCGTGTAGGCGGGTCGTTAAGTGTCCGCGTGAAATCCCACGGCTCAACCGTGGAACTGCCGGGCATACTGGCGACCTT] [+] EMBL CD164403 [ GTGGGCACTCCAATTGAAGAGTTTGATCCTGGCTCAGCCTGAACGCTGGCGGCGTGGCTAAGACATGCAAGTCGTACGGGGCCCGCAAGGGCCCAGTGGCGGACGGGTGAGTAATGAATCGCTAACGTGCCCCGATCCCTGGGATAGCCGGCCGAAAGGCCGGGTAATACCAGATAACGTGACCGCAGGGCATCCTGTGGTCCCCAAAGGGAAACCGGTCCGGGAGCGGGCGATTTCGTATCAGCTAGTTGGTGGGGTAACGGCCCACCAAGGCGACGACGCGTAGCTGGTCTGAGAGGACGGCCAGCCACATTGGGACTGAGACACTGCCCAGACTCCTACGGGGGGCTGCAGTAACGAATCTTCCGCAATGCGCGCAAGCGTGACGGAGCGACGCCGCGTGGAGGTTAAGTCCTTCGGGATGTAAACTCCTGTCAGGGGTTACCAAGTTCTGAGGAGCCCCAGAGGAAAGCACGGCTAACTCTGTGCCAGCAGCCGCGG ] [+] EMBL CD164412 [ AGAGTTTGATCCTGGCTCAGCCTGAACGCTGGCGGCGTGGCTAAGACATGCAAGTCGTACGGGGCCCGCAAGGGCCCAGTGGCGGACGGGTGAGTAATGAATCGCTAACGTGCCCCGATCCCTGGGATAGCCGGCCGAAAGGCCGGGTAATACCAGATGACGTGACCGCAGGGCATCCTGAGGTCCCCAAAGGGAAACCGGTCCGGGAGCGGGCGATTTCGTATCAGCTAGTTGGTGGGGTAACGGCCCACCAAGGCGACGACGCGTAGCTGGTCTGAGAGGACGGCCAGCCACATTGGGACTGAGACACTGCCCAGACTCCTACGGGGGGCTGCAGTAACGAATCTTCCGCAATGCGCGCAAGCGTGACGGAGCGACGCCGCGTGGAGGTTAAGTCCTTCGGGATGTAAACTCCTGTCAGGGGTTACCAAGTTCTGAGGA ] [+] EMBL CD164474 [ AGAGTTTGATCCTGGCTCAGCCTGAACGCTGGCGGCGTGGCTAAGACATGCAAGTCGTACGGGGCCCGCAAGGGCCCAGTGGCGGACGGGTGAGTAATGAATCGCTAACGTGCCCCGATCCCTGGGATAGCCGGCCGAAAGGCCGGGTAATACCAGATGACGTGACCGCAGGGCATCCTGTGGTCCCCAAAGGGAAACCGGTCCGGGAGCGGGCGATTTCGTATCAGCTAGTTGGTGGGGTAACGGCCCACCAAGGCGCCGACGCGTAGCTGGTCTGAGAGGACGGCCAGCCACATTGGGACTGAGACACTGCCCAGACTCCTACGGNGGGCTGCAGTAACGAATCTTCCGCAATGCGCGCAAGCGTGACGGAGCGACGCCGCGTGGAGGTTAAGTCCTTCGGGATGTAAACTCCTGTCAGG ] consensusID : consensus_8978#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 560 fasta sequence [AATTTGCGCGTTAACTGCGTCGCAAACTGAGAGTATCACTAGAGGAAGAGACGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGTCTCAAGCGTTGTTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCTGTGTTGTAAGTCAGAGGTGAAATCCCGGGGCTCAACCTCGGAACTGCCTCCGATACTGCAAGACTTGAGGACTGGAGAGGAGATTGGAATTCATGGTGGAGCAGTGAAATGCGTAGATATCATGAGGAACGCTAGTGGCGTAGGCGAATCTCTGGACAGTTCCTGACGCTGAGGCACGAAGGCCAGGGGAGCAAACGGGATTAGATACCCCGGTAGTCCTGGCAGTAAACGGTGCACGCTTGGTGTGGGAGGAATCGACCCCTTCCGTGCCGTAGCTAACGCGTTAAGCGTGCCGCCTGGGAAGTACGGTCGCAAGACTAAAACTCAAAGAAATTGACGGGGACCCGCACAAGCGGTGGAGTATGTGGCTTAATTCGATGCAACGCGAAGAACCTTACCTGNGCTTGACATGCATTTCTAAGGCG] [-] EMBL CD086761 [AATTTGCGCGTTAACTGCGTCGCAAACTGAGAGTATCACTAGAGGAAGAGACGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGTCTCAAGCGTTGTTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCTGTGTTGTAAGTCAGAGGTGAAATCCCGGGGCTCAACCTCGGAACTGCCTCCGATACTGCAAGACTTGAGGACTGGAGAGGAGATTGGAATTCATGGTGGAGCAGTGAAATGCGTAGATATCATGAGGAACGCTAGTGGCGTAGGCGAATCTCTGGACAGTTCCTGACGCTGAGGCACGAAGGCCAGGGGAGCAAACGGGATTAGATACCCCGGTAGTCCTGGCAGTAAACGGTGCACGCTTGGTGTGGGAGGAATCGACCCCTTCCGTGCCGTAGCTAACGCGTTAAGCGTGCCGCCTGGGAAGTACGGTCGCAAGACTAAAACTCAAAGAAATTGACGGGGACCCGCACAAGCGG ] [+] EMBL CD088114 [ TTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCTGTGTTGTAAGTCAGAGGTGAAATCCCGGGGCTCAACCTCGGAACTGCCTCCGATACTGCAAGACTTGAGGACTGGAGAGGAGATTGGAATTCATGGTGGAGCAGTGAAATGCGTAGATATCATGAGGAACGCTAGTGGCGTAGGCGAATCTCTGGACAGTTCCTGACGCTGAGGCACGAAGGCCAGGGGAGCAAACGGGATTAGATACCCCGGTAGTCCTGGCAGTAAACGGTGCACGCTTGGTGTGGGAGGAATCGACCCCTTCCGTGCCGTAGCTAACGCGTTAAGCGTGCCGCCTGGGAAGTACGGTCGCAAGACTAAAACTCAAAGAAATTGACGGGGACCCGCACAAGCGGTGGAGTATGTGGCTTAATTCGATGCAACGCGAAGAACCTTACCTGNGCTTGACATGCATTTCTAAGGCG] [+] EMBL CD087424 [ CTCGGAACTGCCTCCGATACTGCAAGACTTGAGGACTGGAGAGGAGATTGGAATTCATGGTGGAGCAGTGAAATGCGTAGATATCATGAGGAACGCTAGTGGCGTAGGCGAATCTCTGGACAGTTCCTGACGCTGAAGCACGAAGGCCAGGGGAGCAAACGGGATTAGATACCCCGGTAGTCCTGGCAGTAAACGGTGCACGCTTGGTGTGGGAGGAATCGACCCCTTCCGTGCCGTAGCTAACGCGTTAAGCGTGCCGCCTGGGAAGTACGGTCGCAAGACTAAAACTCAAAGAAATTGACGGGGACCCGCACAAGCGG ] consensusID : consensus_8978#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [ACTCCACCGCTAGCGCAGATCCGCGTCAGTCACTGTGAATTTTACTGTTGCGACCGTACTTACCATGCGGAACGCTTAACACGGGAGCTACCGCACTGAAAGGGTTGATTGCTGCTACACCATGTCGTGCACCGTTAACTGACACGACTACCGGTGTATCTAATCACGTACGCTGACTTTGTCTTCGTGCCTAAATGCCTCGAACTGTACTCAGATTCGCCCATGACAGTATCAGCCATAATGATATTGACCCTTTTTACTGTTTAACCATGACTCACACTATGCATCGGACTCCTCAAGTCTGGGTAAAGCTGAAGCACTACCGAAGTTGAGCCCGGGTATTTGACCTCTGTCTTACAACAGCAGCCTACGCACCCTTTACGCCCATTGATTCCGATCTACGCTTGACACCTTTGCATGACCGCGGCTGCTGGCTCAATGTTAGCCGTCTCTTCCTCTAGTGATACTCTCAGTTTGCGACGCAGTTAACGCGCAAATTTACTCTCACTTGGCCTCT] [+] EMBL CD086853 [ACTCCACCGCTAGCGCAGATCCGCGTCAGTCACTGTGAATTTTACTGTTGCGACCGTACTTACCATGCGGAACGCTTAACACGGGAGCTACCGCACTGAAAGGGTTGATTGCTGCTACACCATGTCGTGCACCGTTAACTGACACGACTACCGGTGTATCTAATCACGTACGCTGACTTTGTCTTCGTGCCTAAATGCCTCGAACTGTACTCAGATTCGCCCATGACAGTATCAGCCATAATGATATTGACCCTTTTTACTGTTTAACCATGACTCACACTATGCATCGGACTCCTCAAGTCTGGGTAAAGCTGAAGCACTACCGAAGTTGAGCCCGGGTATTTGACCTCTGTCTTACAACAGCAGCCTACGCACCCTTTACGCCCATTGATTCCGATCTACGCTTGACACCTTTGCATGACCGCGGCTGCTGGCTCAATGTTAGCCGTCTCTTCCTCTAGTGATACTCTCAGTTTGCGACGCAGTTAACGCGCAAATTTACTCTCACTTGGCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8978#0 CGTGGGCACTCCAATTGAAGAGTTTGATCCTGGCTCAGCCTGAACGCTGGCGGCGTGGCT 60 consensus_8978#1 ------------------------------------AATTTGCGCGTTAACTGCGTCGCA 24 consensus_8978#2 -------------------------------------------------ACTCCACCGCT 11 * * ** consensus_8978#0 AAGACATGCAAGTCGTACGGGGCCCGCAAGGGCCCAGTGGCGGACGGGTGAGTAATGAAT 120 consensus_8978#1 AAC---TGAGAGTATCACTAGAGGAAGAGACGGCTAACTCTGTGCCAGCAGCCGCGGTAA 81 consensus_8978#2 AGCGC---AGATCCGCGTCAGTCACTGTGAATTTTACTGTTGCGACCGTACTTACCATGC 68 * * * * * * consensus_8978#0 CGCTAACGTGCCC--CGATCCCTGGGATAGCCGGCCG-AAAGGCCGGGTAATACCAGATG 177 consensus_8978#1 TACAGAGGTCTCAAGCGTTGTTCGGAATCACTGGGCGTAAAGGGTGCGTAG-GCTGTGTT 140 consensus_8978#2 GG--AACGCTTAACACG------GGAGCTACCGCACTGAAAGGGTTGAT-------TGCT 113 * * ** ** * * * ***** * consensus_8978#0 ACGTGACCGCAGGGCATCCTGTGGTCCCCAAAGGGAAACCGG-TCCGGGAGCGGGCGATT 236 consensus_8978#1 GTAAGTCAGAGGTGAAATCCCGGGGCTCAACCTCGGAACTGCCTCCGATACTGCAAGACT 200 consensus_8978#2 GCTACACCATGTCGTGCACCGTTAACT-------GACACGACTACCGGTGTATCTAATCA 166 * * * * * ** *** consensus_8978#0 TC-GTATCAGCTAGTTGGTGGGGTAACGGCCCACCAAGGCGACGACGCGTAGCTGGTCTG 295 consensus_8978#1 TGAGGACTGGAGAGGAGATTGGAATTCATGGTGGAGCAGTGA-AATGCGTAGATA--TCA 257 consensus_8978#2 CGTACGCTGACTTTGTCTTCGTGCCTAAATGCCTCGAACTG----TACTCAGATTCGCCC 222 * * * * ** * consensus_8978#0 AGAGGACGGCCAGCCACATTGGGACTGAGACACTGCCCAGACTC-CTACGGGGGGCTGCA 354 consensus_8978#1 TGAGGAACGCTAGTGGCGTAGG---CGAATCTCTGGACAGTTCC-TGACG-----CTG-A 307 consensus_8978#2 ATGACAGTATCAGCCATAATGATATTGACCCTTTTTACTGTTTAACCATGACTCACACTA 282 * ** * ** * * * * * * * * consensus_8978#0 GTAACGAATCTTCCGCAATGCGCGCAAGCGTGACGGAGCGACGCCGCGTGGAGGTTAAGT 414 consensus_8978#1 GGCACGAAG-----GCCAGGGGAGCAAACGGGATTA---GATACCCCG-GTAGTCCTGGC 358 consensus_8978#2 TGCATCGGACTCCTCAAGTCTGGGTAAAGCTGAAGC---ACTACCGAAGTTGAGCCCGGG 339 * * * ** ** ** * consensus_8978#0 CCTTCGGGATGTAAACTCCTGTCAGGGGTTACCAAGTTCTGAGGAGCCCCAGAGGAAG-G 473 consensus_8978#1 AGTAAACGGTGCACGCTTGGTGTGGGAGGAATCGACCCCTTCCGTGCCGTAGCTAACGCG 418 consensus_8978#2 TATTTGACCTCTGT-CTTACAACAGCAGCCTACGCACCCTTTACGCCCATTGATTCCGAT 398 * * ** * * * ** ** * * consensus_8978#0 CACGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGTGCCGAGCGTTAGGCGGAAT 533 consensus_8978#1 TTAAGCGTGCCGCCTGGGAAGTACGGTCGCAAGACTAAAACTCAAAGAAATTGACGGGGA 478 consensus_8978#2 CTACGCTTGACACCTTTGCATGACCGCGGC--TGCTGG----CTCAATGTTAGCCGTCTC 452 ** * * * * * * * * * ** consensus_8978#0 CA-CTGGGCTTAAAGCGCGTGTAGGCGGGTCGTTAAGTGTCCGCGTGAAATCCCACGGCT 592 consensus_8978#1 C--CCGCACAAGCGGTG-GAGTATGTGGCTTAATTCGATGCAACGCGAAG------AACC 529 consensus_8978#2 TTCCTCTAGTGATACTCTCAGTTTGCGACGCAGTTAA----CGCGCAAATT-----TACT 503 * ** * * * ** ** * consensus_8978#0 CAACCGTGGAACTGCCGGGCATACTGGCGACCTT 626 consensus_8978#1 TTACC-TGNGCTTGACATGCATTTCTAAGGCG-- 560 consensus_8978#2 CTCACTTGGCCTCT-------------------- 517 * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||