These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8981#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 824 fasta sequence [ACCCTGGGCAAGGGTGGNAAATCAGGGAATATCTCTTTTAAGTGGGCTATTAACATCCCAAACTGTGTTCCCCAATCCCCAAGATGGTTGAGTTTCAGTACTTTGTGTCCCAAAAATGAAAGCAAACGGGAAATACTTTCTCCAATAATAGTTGATCTTAGATGTCCCACATGCATTTCTTTGGCGATGTTTGGAGAGGACATATCGACAATTACAGAGTATTTATGAGGTATGAATGGGGGTGTAACCCCATGAAGTAGAATTCTTCTGACTTCATTAGAAATAAACCGTTGTTTAATCCAAATGTTTATAAAGCCAGGAGGAACGACGTCTACTTTTTCTATTAAATCATTGACAGGTAAAGCGGCAACGATCGATTTCGCAATATCAAATGGATTTTGATCATTGTTTGACTCTTTTCGAATGCTGGGAGCAGAGTTACACTGATAATCCCCAAAACTACGTTTAGTAGGAACACTGAGTTGTACACTGTGCTTAGTATTTATGAACACTGTTTTTATAGCGTAATCAAACAAAGCAGCCAAAGCAGCTTGGATACTAATGGAATTGTATTGCACATGGTCATTCAATTGTTTTAGATACTAAAACAGTGAACATTTTACTTTAATACCTTTTCTAGATGGTTTGCTTGATACCGGAGCTTTTCACTGTCTTCCAATATTTTTTTTATTTCAGAAAAATTTGCGGACTCAAGAAGTTTATCATATTCGTTTTGTAGGCACCTAACGTCTTTCCTCTGAATAGAATTAGTAGTCATCTCATTAAACCAGCAGACTGTTATGTTGCGAATGACCTAGCGGTGT] [+] EMBL CD167857 [ACCCTGGGCAAGGGTGGNAAATCAGGGAATATCTCTTTTAAGTGGGCTATTAACATCCCAAACTGTGTTCCCCAATCCCCAAGATGGTTGAGTTTCAGTACTTTGTGTCCCAAAAATGAAAGCAAACGGGAAATACTTTCTCCAATAATAGTTGATCTTAGATGTCCCACATGCATTTCTTTGGCGATGTTTGGAGAGGACATATCGACAATTACAGAGTATTTATGAGGTATGAATGGGGGTGTAACCCCATGAAGTAGAATTCTTCTGACTTCATTAGAAATAAACCGTTGTTTAATCCAAATGTTTATAAAGCCAGGAGGAACGACGTCTACTTTTTCTATTAAATCATTGACAGGTAAAGCGGCAACGATCGATTTCGCAATATCAAATGGATTTTGATCATTGTTTGACTCTTTTCGAATGCTGGGAGCAGAGTTACACTGATAATCCCCAAAACTACGTTTAGTAGGAACACTGAGTTGTACACTGTGCTTAGTATTTATGAACACTGTTTTTATAGCGTAATCAAACAAAGCAGCCAAAGCAGCTTGGATACTAATGGAATTGTA ] [+] EMBL CD154955 [ TTTCAGTACTTTGTGTCCCAAAAATGAAAGCAAACGGGAAATACTTTCTCCAATAATAGTTGATCTTAGATGTCCCACATGCATTTCTTTGGCGATGTTTGGAGAGGACATATCGACAATTACAGAGTATTTATGAGGTATGAATGGGGGTGTAACCCCATGAAGTAGAATTTTTCTGACTTCATTAGAAATAAACCGTTGTTTAATCCAAATGTTTATAAAGCCAGGAGGAACGACGTCTACTTTTTCTATTAAATCATTGACAGGTAAAGCGGCAACGATCGATTTCGCAATATCAAATGGATTTTGATCATTGTTTGACTCTTTTCGAATGCTGAGAGCAGAGTTACACTGATAAT CCCAAAACTACGTTTAGTAGGAACACTGAGTTGTACACTGTGCTTAGTATTTATGAACACTGTTTTTATAGCGTAATCAAACAAAGCAGCCAAAGCA ] [-] EMBL CD169948 [ AGCGTAATCAAACAAAGCAGCCAAAGCAGCTTGGATACTAATGGAATTGTATTGCACATGGTCATTCAATTGTTTTAGATACTAAAACAGTGAACATTTTACTTTAATACCTTTTCTAGATGGTTTGCTTGATACCGGAGCTTTTCACTGTCTTCCAATATTTTTTTTATTTCAGAAAAATTTGCGGACTCAAGAAGTTTATCATATTCGTTTTGTAGGCACCTAACGTCTTTCCTCTGAATAGAATTAGTAGTCATCTCATTAAACCAGCAGACTGTTATGTTGCGAATGACCTAGCGGTGT] consensusID : consensus_8981#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 514 fasta sequence [AGAGTGTACTGGTCCACTGGATTCCGTCCTCCTTTGATCTTGCTCCGACATTTCTCCTGCTTTGACAAACTTGTTTANAGTCCCTTAACATTTGGTTGTCGGACTCTTTGATTGGATTTTTGTTCACTGATTTGTATATCCTTTCATCCTCAAGCAGTTCTTTGCTTTCCTGATATATTGTTCCTTGTTCATAACTACCGTAGCGCGTTTTTGTGCACTGGAACTATGGTAATATCTTCTCTAGTTCTGAGTTTCTTTAAAACTGTCTGTTCTTGTGCGGTCATTTGGGTTTTGTCTTCTGTCGAGTTAGTGGCACTATGGTTTGTCTTGATTCCTACTGAGTTTTTCACTGTCTTCCAATATTTTTTTATTTCAGAAAAATTTGCGGACTCAAGAAGTTTATCATATTCGTTTTGTAGGCACCTAACGTCTTTCCTCTGAATAGAATTAGTAGTCATCTCATTAAACCAGCAGACTGTTATGTTGCGAATGACCTAGCGGTGTTAAAATTCCC] [-] EMBL CD152648 [AGAGTGTACTGGTCCACTGGATTCCGTCCTCCTTTGATCTTGCTCCGACATTTCTCCTGCTTTGACAAACTTGTTTANAGTCCCTTAACATTTGGTTGTCGGACTCTTTGATTGGATTTTTGTTCACTGATTTGTATATCCTTTCATCCTCAAGCAGTTCTTTGCTTTCCTGATATATTGTTCCTTGTTCATAACTACCGTAGCGCGTTTTTGTGCACTGGAACTATGGTAATATCTTCTCTAGTTCTGAGTTTCTTTAAAACTGTCTGTTCTTGTGCGGTCATTTGGGTTTTGTCTTCTGTCGAGTTAGTGGCACTATGGTTTGTCTTGATTCCTACTGAGTTTTTCACTGTCTTCCAATATTTTTTTATTTCAGAAAAATTTGCGGACTCAAGAAGTTTATCATATTCGTTTTGTAGGCACCTAACGTCTTTCCTCTGAATAGAATTAGTAGTCATCTCATTAAACCAGCAGACTGTTATGTTGCGAATGACCTAGCGGTGTTAAAATTCCC] [-] EMBL CD066978 [ GTCCACTGGATTCCGTCCTCCTTTGATCTTGCTCCGACATTTCTCCTGCTTTGACAAACTTGTTTAAAGTCCCTTAACATTTGGTTGTCGGACTCTTTGATTGGATTTTTGTTCACTGATTTGTATATCCTTTCATCCTCAAGCAGT ] consensusID : consensus_8981#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 471 fasta sequence [CTAGTTTTGAAGTTTTATAAAAGCTTGAAGGTCTGATAAAGGAGGTGCAGTTTTATGGTCAGGATATATCTCTTTTAAGTGGGCTATTAACATCNCAAACTGTGTTCCCCAATCCCCAAGATGGTTGAGTTTCAGTACTTTGTGTCCCAAAAATGAAAGCAAACGGGAAATACTTTCTCCAATAATAGTTGATCTTAGATGTCCCACATGCATTTCTTTGGCGATGTTTGGAGAGGACATATCGACAATTACAGAGTATTTATGAGGTATGAATGGGGGTGTAACCCCATGAAGTAGAATTTTTCTGACTTCATTAGAAATAAACCGTTGTTTAATCCAAATGTTTATAAAGCCAGGAGGAACGACGTCTACTTTTTCTATTAAATCATTGACAGGTAAAGCGGCAACGATCGATTTCGCAATATCAAATGGATTTTGATCATTGTTTGACTCTTTTCGAATGCTGAGAGC] [-] EMBL AI975083 [CTAGTTTTGAAGTTTTATAAAAGCTTGAAGGTCTGATAAAGGAGGTGCAGTTTTATGGTCAGGATATATCTCTTTTAAGTGGGCTATTAACATCNCAAACTGTGTTCCCCAATCCCCAAGATGGTTGAGTTTCAGTACTTTGTGTCCCAAAAATGAAAGCAAACGGGAAATACTTTCTCCAATAATAGTTGATCTTAGATGTCCCACATGCATTTCTTTGGCGATGTTTGGAGAGGACATATCGACAATTACAGAGTATTTATGAGGTATGAATGGGGGTGTAACCCCATGAAGTAGAATTTTTCTGACTTCATTAGAAATAAACCGTTGTTTAATCCAAATGTTTATAAAGCCAGGAGGAACGACGTCTACTTTTTCTATTAAATCATTGACAGGTAAAGCGGCAACGATCGATTTCGCAATATCAAATGGATTTTGATCATTGTTTGACTCTTTTCGAATGCTGAGAGC] [+] EMBL CD195894 [ ATCTTAGATGTCCCACATGCATTTCTTTGGCGATGTTTGGAGAGGACATATCGACAATTACAGAGTATTTATGAGGTATGAATGGGGGTGTAACCCCATGAAGTAGAATTTTTCTGACTTCATTAGAAATAAACCGTTGTTTAATCCAAATGTTTATAAAGCCAGGAGGAACGACGTCTACTTTTTCTATT AATCATTGA ] consensusID : consensus_8981#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [TCAAGCAGACGACATAGAGGACAAAGAAACACTCTCAAGGAAAAAAACGAATCAAGATTTCAAAGCCACCCATAGAAGAAACACAAACAACTGTGTGGTCATTCTTGCAAAACAACCTCTGATAAAGAAAGAAGAAAATCTCCGAAAAGCATTTAACTACAATACACGTGACGTTTCAAAAAACTAGAATTCTCCGCCGCATTAGAGTCATCACTCAAAACTGTCGGGATACAGGAAAAAACTCAGTAGGAATTAAGACAAACCATAGTGCCACTAACTCGACAGAAGACAAAACCCAAATGACCGCACAAGAACAGACAGTTTTAAAGAAACTCAGAACTAGAGAAGATATTACCATAGTTCCAGTGCACAAAAACGCGCTACGGTAGTTATGAACAAGGAACAATATATCAGGAAAGCAAAGAACTGCTTGAGGATGA] [+] EMBL CD152740 [TCAAGCAGACGACATAGAGGACAAAGAAACACTCTCAAGGAAAAAAACGAATCAAGATTTCAAAGCCACCCATAGAAGAAACACAAACAACTGTGTGGTCATTCTTGCAAAACAACCTCTGATAAAGAAAGAAGAAAATCTCCGAAAAGCATTTAACTACAATACACGTGACGTTTCAAAAAACTAGAATTCTCCGCCGCATTAGAGTCATCACTCAAAACTGTCGGGATACAGGAAAAAACTCAGTAGGAATTAAGACAAACCATAGTGCCACTAACTCGACAGAAGACAAAACCCAAATGACCGCACAAGAACAGACAGTTTTAAAGAAACTCAGAACTAGAGAAGATATTACCATAGTTCCAGTGCACAAAAACGCGCTACGGTAGTTATGAACAAGGAACAATATATCAGGAAAGCAAAGAACTGCTTGAGGATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8981#0 -------------------------------------ACCCTGGGCAAGGGTGGNAAATC 23 consensus_8981#2 CTAGTTTTGAAGTTTTATAAAAGCTTGAAGGTCTGATAAAGGAGGTGCAGTTTTATGGTC 60 consensus_8981#1 -----------------------------------------AGAGTGTACTGGTCCACTG 19 consensus_8981#3 ------------------------------------------------------------ consensus_8981#0 AGGGAATATCTCTTTTAAGTGGGCTATTAACATCCCAAACTGTGTTCCCCAATCCCCAAG 83 consensus_8981#2 AGGATATATCTCTTTTAAGTGGGCTATTAACATCNCAAACTGTGTTCCCCAATCCCCAAG 120 consensus_8981#1 GATTCCGTCCTCCTTTGATCTTGCT-CCGACATTTCTC-CTGCTTTGACAAACTT----G 73 consensus_8981#3 ------------------TCAAGCAGACGACATAGAGGACAAAG--AAACACTCTCAAGG 40 ** **** * * * consensus_8981#0 ATGGTTGAGTTTCAGTACTTTGTGTCCCAAAAATGAAAGCAAACGGGAAAT-ACTTTCTC 142 consensus_8981#2 ATGGTTGAGTTTCAGTACTTTGTGTCCCAAAAATGAAAGCAAACGGGAAAT-ACTTTCTC 179 consensus_8981#1 TTTANAGTCCCTTAACATTTGGTTGTCGGACTCTTTGATTGGATTTTTGTTCACTGATTT 133 consensus_8981#3 AAAAAAACGAATCAAGATTTCAAAGCC--ACCCATAGAAGAAACACAAACA-ACTGT--- 94 * * * ** * * * * *** consensus_8981#0 CAATAATAGTTGATCTTAGATGTCCCAC-ATGCATTTCTTTGGCGATGTTTGGAGAGGAC 201 consensus_8981#2 CAATAATAGTTGATCTTAGATGTCCCAC-ATGCATTTCTTTGGCGATGTTTGGAGAGGAC 238 consensus_8981#1 GTATATCCTTTCATCCTCAAGCAGTTCT-TTGCTTTCCTGATATATTGTTCCTTGTT--C 190 consensus_8981#3 --GTGGTCATTCTTGCAAAACAACCTCTGATAAAGAAAGAAGAAAATCTCCGAAAAGCAT 152 * ** * * * * * consensus_8981#0 ATATCGACAATTACAGAGTATTTATGAGGTATGA--ATGGGGGTGTAACCCCATGAAGTA 259 consensus_8981#2 ATATCGACAATTACAGAGTATTTATGAGGTATGA--ATGGGGGTGTAACCCCATGAAGTA 296 consensus_8981#1 ATAACTACCGTAGC-GCGTTTTTGTGCACTGGAACTATGGTAATATCTTCTCTAGTTCTG 249 consensus_8981#3 TTAACTACAATACACGTGACGTTTCAAAAAACTA-----GAATTCTCCGCCGCATTAGAG 207 ** * ** * * * ** * * * * * consensus_8981#0 GAATTCTTCTGACTTCATTAGAAATAAACCGTTGTTTAATCCAAATGTT-TATAAAGCCA 318 consensus_8981#2 GAATTTTTCTGACTTCATTAGAAATAAACCGTTGTTTAATCCAAATGTT-TATAAAGCCA 355 consensus_8981#1 AGTTTCTTTAAAACTGTCTGTTCTTGTGCGGTCATTTGGGTTTTGTCTTCTGTCGAGTTA 309 consensus_8981#3 TCATCACTCAAAACTGTCGGGATACAGGAAAAAACTCAGTAGGAAT------TAAGACAA 261 * * * * * * * * consensus_8981#0 GGAGGAACGACGTCTACTTT---TTCTATTAAATCATTGACAGGTAAAGCGGCAACGATC 375 consensus_8981#2 GGAGGAACGACGTCTACTTT---TTCTATTAAATCATTGACAGGTAAAGCGGCAACGATC 412 consensus_8981#1 GTGGCACTATGGTTTGTCTTGATTCCTACTGAGTTTTTCACTG-TCTTCCAATATTTTTT 368 consensus_8981#3 ACCATAGTGCCACTAACTCGACAGAAGACAAAACC--CAAATGACCGCACAAGAACAGAC 319 * * * * * * * consensus_8981#0 GATTTCGCAATATCAAATGGATTTT-GATCATTGTTTGACTCTTTTCGAATGCTGGGAGC 434 consensus_8981#2 GATTTCGCAATATCAAATGGATTTT-GATCATTGTTTGACTCTTTTCGAATGCTGAGAGC 471 consensus_8981#1 TATTTCAGAAAAATTTGCGGACTCAAGAAGTTTATCATATTCGTTTTGTAGGCACCTAAC 428 consensus_8981#3 AGTTTTAAAGAAACTCA-GAACTAGAGAAGATA--TTACCATAGTTCCAGTGCACAAAAA 376 *** * * * * * ** * ** ** * consensus_8981#0 AGAGTTACACTGATAATCCCCAAAACTACGTTTAGTAGGAACACTGAGTTGTACACTGTG 494 consensus_8981#2 ------------------------------------------------------------ consensus_8981#1 GTCTTTCCTCTGAATAGAATTAGTAGTCATCTCATTAAACCAGCAGACTGTTATGTTGCG 488 consensus_8981#3 CGCGCTACGGTAGTTATGAACAAGGAACAATATATCAGGAAAGCAAAGAACTGC-TTGAG 435 consensus_8981#0 CTTAGTATTTATGAACACTGTTTTTATAGCGTAATCAAACAAAGCAGCCAAAGCAGCTTG 554 consensus_8981#2 ------------------------------------------------------------ consensus_8981#1 AATGACCTAGCGGTGTTAAAATTCCC---------------------------------- 514 consensus_8981#3 GATGA------------------------------------------------------- 440 consensus_8981#0 GATACTAATGGAATTGTATTGCACATGGTCATTCAATTGTTTTAGATACTAAAACAGTGA 614 consensus_8981#2 ------------------------------------------------------------ consensus_8981#1 ------------------------------------------------------------ consensus_8981#3 ------------------------------------------------------------ consensus_8981#0 ACATTTTACTTTAATACCTTTTCTAGATGGTTTGCTTGATACCGGAGCTTTTCACTGTCT 674 consensus_8981#2 ------------------------------------------------------------ consensus_8981#1 ------------------------------------------------------------ consensus_8981#3 ------------------------------------------------------------ consensus_8981#0 TCCAATATTTTTTTTATTTCAGAAAAATTTGCGGACTCAAGAAGTTTATCATATTCGTTT 734 consensus_8981#2 ------------------------------------------------------------ consensus_8981#1 ------------------------------------------------------------ consensus_8981#3 ------------------------------------------------------------ consensus_8981#0 TGTAGGCACCTAACGTCTTTCCTCTGAATAGAATTAGTAGTCATCTCATTAAACCAGCAG 794 consensus_8981#2 ------------------------------------------------------------ consensus_8981#1 ------------------------------------------------------------ consensus_8981#3 ------------------------------------------------------------ consensus_8981#0 ACTGTTATGTTGCGAATGACCTAGCGGTGT 824 consensus_8981#2 ------------------------------ consensus_8981#1 ------------------------------ consensus_8981#3 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||