These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8998#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 614 fasta sequence [TTATACAATTCGCGCACAGCGTATTTCAAACTCGTGAATTTATTACACATTTATTTTATAGGTTCTGAGTGCCTTTATTTATAATGTACTGGCCGTTCGGTACATAGCATACACAGTTATCGCCCTACTTGCTGAGATCAACAGCATATTTCTTCACACCCGTAAATTGATGCAAATGCACAGAGTTCCTTCAGCGAACATGTCTTATCGATTCAATTCTGTCCTGAACCTAACTACATTCGCAGGTTTTCGGGGTTTCGCACTGCTTCGTATTTCATACGGCATGTATATGAATCCCGAAAAAATGACACCTTTTTATACTGTATTGTTGGGGACAAGTATGTTCATCATGAATCTGCTGAATCCAGTTCTATTTTACATACTTCTACGCAACGATTTTCTACTTCCACCCAAAGATGAAGATCTTTATATCAAAAACGGGATGAAAGCAAATTGTCCTCCCTCAAAAAGCAAAATATCCAATGGTTACAGTTTATCATTAGAAATAAATGGCTTTCCCTGCGATGG-ATTCATAAGCGAAATCTGTGAAAACTTTANATAAGTACTGTGAAATTAATCTATCTGTTGGTGAAAATATACCTACTAATNCTTTC] [+] EMBL CD178776 [TTATACAATTCGCGCACAGCGTATTTCAAACTCGTGAATTTATTACACATTTATTTTATAGGTTCTGAGTGCCTTTATTTATAATGTACTGGCCGTTCGGTACATAGCATACACAGTTATCGCCCTACTTGCTGAGATCAACAGCATATTTCTTCACACCCGTAAATTGATGCAAATGCACAGAGTTCCTTCAGCGAACATGTCTTATCGATTCAATTCTGTCCTGAACCTAACTACATTCGCAGGTTTTCGGGGTTTCGCACTGCTTCGTATTTCATACGGCATGTATATGAATCCCGAAAAAATGACACCTTTTTATACTGTATTGTTGGGGACAAGTATGTTCATCATGAATCTGCTGAATCCAGTTCTATTTTACATACTTCTACGCAACGATTTTCTACTTCCACCCAAAGATGAAGATCTTTATATCAAAAACGGGATGAAAGCAAATTGTCCTCCCTCAAAAAGCAAAATATCCAATGGTTACAGTTTATCATTAGAAATAAATGGCTTTCCCTGCGATGG ATTCATAAGCGAAATCTGTGAAAACTTTANATAAGTACTGTGAAATTAATCTATCTGTTGGTGAAAATATACCTACTAATNCTT ] [-] EMBL CD179011 [ AGTTTCTGAGTGCCTTTATTTATAATGTACTGTCAGTTCGGTACATAGCATACACAGTTATCGCCCTACTTGCTGAGATCAACAGCATATTTCTTCACACCCGTAAATTGATGCAAATGCACAGAGTTCCTTCAGTGAACATGTCTTATCGATTCAATTCTGTCCTGAACCTAACTACATTCGCAGGTTTTCGGGGTTTCGCACTGCTCCGTATTTCATACGGCATGTATATGAATCCCGAAAAAATGACACCTTTTTATACTGTATTGTTGGGGACAAGTATGTTCATCATGAATCTGCTGAATCCAGTTCTATTTTACATACTTCTACGCAACGATTTTCTACTTCCACCCAAAGATGAAGATCTTTATATCAAAAACGGGATGAAAGCAAATTGTCCTCCCTCAAAAAGCAAAATATCCAATGGTTACAGTTTATCATTAGAAATAAATGGCTTTCCCTGCGATGGAATTCATAAGCGAAATCTGTGAAAACTTTAAATAAGTACTGTGAAATTAATCTATCTGTTGGTGAAAATATACCTACTAAT CTTTC] consensusID : consensus_8998#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 586 fasta sequence [CGACTCTAGAAGGACCCCCAGAAGGCTGTTGNGAGTTGCAAAGGTTCACTTGCCATATGGAAGTGGCGCAATATGGTGATTTCTTGGTTGCATGCTGTTTTGATTGGAACATGGGATTTATTATGCTTTTATTATTATCCTGAGTTGATGAATGATCCAGTAGACCATATCGTGCCTTTTACATATTACTTAGTGGCCGTTTCTACTGGTTACTTTCTTTATGATTTTTGGGATATGTTTACCCAGAGGCAATTGTTCAAAATGTGGGAATTGACATTGCATCACATTGCAGTTCTGAGTGCCTTTATTTATAATGTACTGTCAGTTCGGTACATAGCATACACAGTTATCGCCCTACTTGCTGAGATCAACAGCATATTTCTTCACACCCGTAAATTGATGCAAATGCACAGAGTTCCTTCAGTGAACATGTCTTATCGATTCAATTCTGTCCTGAACCTAACTACATTCGCAGGTTTTCGGGGTTTCGCACTGCTTCGTATTTCATACGGCATGTATATGAATCCCGAAAAAATGACACCTTTTTATACTGTATTGTTGGGGACAAGTATGTTCATCATGAATC] [+] EMBL CD166448 [CGACTCTAGAAGGACCCCCAGAAGGCTGTTGNGAGTTGCAAAGGTTCACTTGCCATATGGAAGTGGCGCAATATGGTGATTTCTTGGTTGCATGCTGTTTTGATTGGAACATGGGATTTATTATGCTTTTATTATTATCCTGAGTTGATGAATGATCCAGCAGACCATATCGTGCCTTTTACATATTACTTAGTGGCCGTTTCTACTGGTTACTTTCTTTATGATTTTTGGGATATGTTTACCCAGAGGCAATTGTTCAAAATGTGGGAATTGACATTGCATCACATTGCAGTTCTGAGTGCCTTTATTTATAATGTACTGTCAGTTCGGTACATAGCATACACAGTT ] [+] EMBL CD166346 [ TTGNGAGTTGCAAAGGTTCACTTGCCATATGGAAGTGGCGCAATATGGTGATTTCTTGGTTGCATGCTGTTTTGATTGGAACATGGGATTTATTATGCTTTTATTATTATCCTGAGTTGATGAATGATCCAGTAGACCATATCGTGCCTTTTACATATTACTTAGTGGCCGTTTCTACTGGTTACTTTCTTTATGATTTTTGGGATATGTTTACCCAGAGGCAATTGTTCAAAATGTGGGAATTGACA ] [+] EMBL CD166333 [ TGCTTTATGGAAGTGGCGCAATATGGTGATTTCTTGGTTGCATGCTGTTTTGATTGGAACATGGGATTTATTATGCTTTTATTATTATCCTGAGTTGATGAATGATCCAGTAGACCATATCGTGCCTTTTACATATTACTTAGTGGCCGTTTCTACTGGTTACTTTCTTTATGATTTTTGGGATATGTTTACCCAGAGGCAATTGTTCAAAATGTGGGAATTGACATTGCATCACATTGCAGTTCTGAGTGCCTTTATTTATAATGTACTGTCAGTTCGGTACATAGCATACACAGTT ] [+] EMBL CD166330 [ tgtcttTATGGAAGTGGCGC ACATGGTGATTTCTTGGTTGCATGCTGTTTTGATTGGAACATGGGATTTATTATGCTTTTATTATTATCCTGAGTTGATGAATGATCCAGTAGACCATATCGTGCCTTTTACATATTACTTAGTGGCCGTTTCTACTGGTTACTTTCTTTATGATTTTGGGGATATGTTTACCCAGAGGCAATTGTTCAAAATGTGGGAATTGACA ] [-] EMBL CD188181 [ AAATGTGGGAATTGACATTGCATCACATTGCAGTTCTGAGTGCCTTTATTTATAATGTACTGTCAGTTCGGTACATAGCATACACAGTTATCGCCCTACTTGCTGAGATCAACAGCATATTTCTTCACACCCGTAAATTGATGCAAATGCACAGAGTTCCTTCAGTGAACATGTCTTATCGATTCAATTCTGTCCTGAACCTAACTACATTCGCAGGTTTTCGGGGTTTCGCACTGCTTCGTATTTCATACGGCATGTATATGAATCCCGAAAAAATGACACCTTTTTATACTGTATTGTTGGGGACAAGTATGTTCATCATGAATC] consensusID : consensus_8998#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [TCAGTGATCACGACAGCTTTACAACGCCAATGTACTGGCATGGATTCCTGCCATCTGCGAGTGCCGGTTGCGGCACCATCTGCATCGCATTATCCATGACTTTTTTCAGCGTGCTAGATTATGTTTTACGAGGAGTAAATCCCCCTACGACTGTTGTTTGCAAAGGTTCACTTGCCATATGGAAGTGGCGCAATATGGTGATTTCTTGGTTGCATGCTGTTTTGATTGGAACATGGGATTTATTATGCTTTTATTATTATCCTGAGTTGATGAATGATCCAGTAGACCATATCGTGCCTTTTACATATTACTTAGTGGCCGTTTCTACTGGTTACTTTCTTTATGATTTTTGG] [+] EMBL CD185801 [TCAGTGATCACGACAGCTTTACAACGCCAATGTACTGGCATGGATTCCTGCCATCTGCGAGTGCCGGTTGCGGCACCATCTGCATCGCATTATCCATGACTTTTTTCAGCGTGCTAGATTATGTTTTACGAGGAGTAAATCCCCCTACGACTGTTGTTTGCAAAGGTTCACTTGCCATATGGAAGTGGCGCAATATGGTGATTTCTTGGTTGCATGCTGTTTTGATTGGAACATGGGATTTATTATGCTTTTATTATTATCCTGAGTTGATGAATGATCCAGTAGACCATATCGTGCCTTTTACATATTACTTAGTGGCCGTTTCTACTGGTTACTTTCTTTATGATTTTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8998#1 ------------------------------------------------------------ consensus_8998#2 --------TCAGTGATCACGACAGCTTTACAACGCCAATGTACTG-GCATGGATTCCTGC 51 consensus_8998#0 TTATACAATTCGCGCACAGCGTATTTCAAACTCGTGAATTTATTACACATTTATTT-TAT 59 consensus_8998#1 ------------------------------------------------------------ consensus_8998#2 CATCTGCGAGTGCCGGTTGCGGCACCATCTGCATCGCATTATCCATGACTTTTTTCAGCG 111 consensus_8998#0 AGGTTCTGAGTGCCTTTATTTATAATGTACTGGCCGTTCGGTACATAGCATACACAGTTA 119 consensus_8998#1 ---------------CGACTCTAGAAGGACCCCCAGAAGGCTGTTGNGAGTTGCAAAGGT 45 consensus_8998#2 T-GCTAGATTATGTTTTACGAGGAGTAAATCCCCCTACGACTGTTGT---TTGCAAAGGT 167 consensus_8998#0 TCGCCCTACTTGCTGAGATCAACAGCATATTTCTTCACACCCGTAAATTGATGCAAATGC 179 * * * * * ** ****** * consensus_8998#1 TCAC--TTGCCATATGGAAGTGGCGCAATATGGTGATTTCTTGGTTGCAT---GCTGTTT 100 consensus_8998#2 TCAC--TTGCCATATGGAAGTGGCGCAATATGGTGATTTCTTGGTTGCAT---GCTGTTT 222 consensus_8998#0 ACAGAGTTCCTTCAGCGAACATGTCTTATCGATTCAATTCTGTCCTGAACCTAACTACAT 239 ** ** * * *** * ** * * **** ** * ** * consensus_8998#1 TGATTGGAACATGGGATTTATTA-TGCTTTTATTATTATCCTGAGTTGATGAATGATCCA 159 consensus_8998#2 TGATTGGAACATGGGATTTATTA-TGCTTTTATTATTATCCTGAGTTGATGAATGATCCA 281 consensus_8998#0 TCGCAGGTTTTCGGGGTTTCGCACTGCTTCGTATTTCATACGGCATGTAT--ATGAATCC 297 * ** *** *** * ***** * * ** * * * ** **** * consensus_8998#1 GTAGACCATATCGTGCCTTTTACATATTACT-TAGTGGCCGTTTCTACTGGTTACTTTCT 218 consensus_8998#2 GTAGACCATATCGTGCCTTTTACATATTACT-TAGTGGCCGTTTCTACTGGTTACTTTCT 340 consensus_8998#0 CGAAAAAATGACAC-CTTTTTATACTGTATTGTTGGGGACAAGTATGTTCATCATGAATC 356 * * ** * * ***** * ** * * * ** * * * * * * consensus_8998#1 TTATGATTTTTGGGATATGTTTACCCAGAGGCAATTGTTCAAAATGTGGGAATTGACATT 278 consensus_8998#2 TTATGATTTTTGG----------------------------------------------- 353 consensus_8998#0 TGCTGAATCC-AGTTCTATTTTACATACTTCTACGCAACGATTTTCTACTTCCACCCAAA 415 * *** * * consensus_8998#1 GCATCACATTGCAGTTCTGAGTGCCTTTATTTATAATGTACTGTCAGTTCGGTACATAGC 338 consensus_8998#2 ------------------------------------------------------------ consensus_8998#0 GATGAAGATCTTTATATCAAAAACGGGATGAAAGCAAATTGTCCTCCCTCAAAAAGCAAA 475 consensus_8998#1 ATACACAGTTATCGCCCTACTTGCTGAGATCAACAGCATATTTCTTCACACCCGTAAATT 398 consensus_8998#2 ------------------------------------------------------------ consensus_8998#0 ATATCCAATGGTTACAGTTTATCATTAGAAATAAATGGCTTTCCCTGCGATGGATTCATA 535 consensus_8998#1 GATGCAAATGCACAGAGTTCCTTCAGTGAACATGTCTTATCGATTCAATTCTGTCCTGAA 458 consensus_8998#2 ------------------------------------------------------------ consensus_8998#0 AGCGAAATCTGTGAAAACTTTANATAAGTACTGTGAAATTAATCTATCTGTTGGTGAAAA 595 consensus_8998#1 CCTAACTACATTCGCAGGTTTTCGGGGTTTCGCACTGCTTCGTATTTCATACGGCATGTA 518 consensus_8998#2 ------------------------------------------------------------ consensus_8998#0 TATACCTACTAATNCTTTC----------------------------------------- 614 consensus_8998#1 TATGAATCCCGAAAAAATGACACCTTTTTATACTGTATTGTTGGGGACAAGTATGTTCAT 578 consensus_8998#2 ------------------------------------------------------------ consensus_8998#0 ------------------------------------------------------------ consensus_8998#1 CATGAATC 586 consensus_8998#2 -------- consensus_8998#0 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||