These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9000#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 556 fasta sequence [GTATCAACGTCATCTTTTG--GAG-AC-AAAATTAGCAC-ATA-TC-AATGCTTGTAACAGCCCACC-TGTTCTGTTGA-AAAAATCATTGTCATCAG-A-TATAAATCTGCCAGA-AATAATCGATAAACCTAGTTCAA-TTATACC-A-AACAATACTACA-GCCACTACTTCTACTAATAGTGATAATAATAATGATGGTT-TTAATAGCTCGAAAGAACATGATGTAATGAGAAAGTTTAGGAACAAATCTCAAACGTTAATTTTATCAAGATTACCATCAACGTCATCCAAGATCTACTTACATTCAAGGCATGCTAGTCTACCAAATCCAAATACATGTAGTAATACTGTTATTATTGGTGATGGTATTAGCAGTCGTGAACATAGTTATGCTAACACTGGTGTTAATCATAGTCGACAAGAAAATCTGTCATTTCGTGTAAATAAAAAGATTCCATGTGATTATTTATGTAAGATACATCGTAATCTTAGTAATTCTTCAGACAGAAAGAATTCTGATATGCTAGATATGATTACTGAGTATTCACCGTATTATAATTTGTCGACA] [+] EMBL CD065855 [GTATCAACGTCATCTTCTGNNGAG AA CAAATTAGCAC ATA TC AATGCTTGTAACAGCCCACC TGTTCTGTTGA AAAAATCATTGTCATCAG A TATAAATCTGCCAGA AATAATCGATAAACCTAGTTCAA TTATACC A AACAATACTACA GCCACTACTTCTACTAATAGTGATAATAATAATGATGGTT TTAATAGCTCGAAAGAACATGATGTAATGAGAAAGTTTAGGAACAAATCTCAAACGTTAATTTTATCAAGATTACCATCAACGTCATCCAAGATCTACTTACATTCAAGGCATGCTAGTCTACCANATCCAAATACATGTAGTAATACTGTTATTATTGGTGATGGTATTAGCAGTCGTGAACATAGTTATGCTAACACTGGTGTTAATCATAGTCGACAAGAAAATCTGTCATTTCGTGTAAATAAAAAGATTCCATGTGATTATTTATGTAAGATACATCGTAATCTTAGTAATTCTTCAGACAGAAAGAATTCT ] [+] EMBL CD065849 [ ATCTTTTG GAG AC AAAATTAGCAC ATA CC AATGCTTGTAACAGCCCACC TGTTCTGTTGA AAAAATCATTGTCATCAG A TATAAATCTGCCAGATAATAATCGATTAACCTAGTTCAA TTATACC A AACAATACTACA GCCACTACTTCTACTAATAGTGATAATAATAATGATGGTT TTAATAGCTCGAAAGAACATGATGTAATGAGAAAGTTTAGGAACAAATCTCAAACGTTAATTTTATCAAGATTACCATCAACGTCATCCAAGATCTACTTACATTCAAGGCATGCTAGTCTACCAAATCCAAATACATGTAGTAATACTGTTATTATTGGTGATGGTATTAGCAGTCGTGAACATAGTTATGCTAACACTGGTGTTAATCATAGTCGACAAGAAAATCTGTCATTTCGTGTAAATAAAAAGATTCCATGTGATTATTTATGTCAGATACATCGTAATCTTAGTAATTCTTCAGACAGAAAGAATTCTGATATGCTAGATATGATTACTGAGTATTCACCGTATTATAATTTGTCGAC ] [+] EMBL CD065854 [ ATCTTTTG GAGAACAAAAATTAGCAC ATA TC AATGCTTGTAACAGCCCACC TGTTCTGTTGA AAAAATCATTGTCATCAG A TATAAATCTGCCAGA AATAATCGATAAACCTAGTTCAA TTATACC A AACAATACTACA GCCACTACTTCTACTAATAGTGATAATAATAATGATGGTT TTAATAGCTCGAAAGAACATGATGTAATGAGAAAGTTTAGGAACAAATCTCAAACGTTAATTTTATCAAGATTACCATCAACGTCATCCAAGATCTACTTACATTCAAGGCATGCTAGTCTACCAAATCCAAATACATGTAGTAATACTGTTATTATTGGTGATGGTATTAGCAGTCGTGAACATAGTTATGCTAACACTGGTGTTAATCATAGTCGACAAGAAAATCTGTCATTTCGTGTAAATAAAAAGATTCCATGTGATTATTTATGTCAGATACATCGTAATCTTAGTAATTCTTCAGACAGAAAGAATTCTGATATGCTAGATATGATT ] [+] EMBL CD065801 [ TCTTTGG GAG AC AGATTTATCACTATATTCTACTGC TGTGTCAGCCCACCATG TCTGTTGAGAAAAATCATTGTCATCAGCATTAT ATTCTGCCATACAAGTGTCGATAAACCTAGTTCAAGTTATACCTACATCAATACTACAGGCCACTACTTCTACTAGTAGTGATAATAATAATGATGGTTGTTAATAGCTCGAAAGAACCTGATGTAATGAGAAAGTTTAGGAACAAATCTCAAACGTTAATTTTATCAAGATTACCATCAACGTCATCCAAGATCTACTTACATTCAAGGCATGCTAGTCTACCAAATCCAAATACATGTAGTAATACTGTTATTATTGGTGATGGTATTAGCAGTCGTGAACATAGTTATGCTAACACTGGTGTTAATCATAGTCGACAAGAAAATCTGTCATTTCGTGTAAATAAAAAGATTCCATGTGATTATTTATGTAAGATACATCGTAATCTTAGTAATTCTTCAGACAGAAAGAATTCTGATATGCTAGATATGATTACTG ] [+] EMBL CD065809 [ TCAA TTATGCC A AACAATACTACA GCCACTAGTTCTACCAATAGTGATAATAATAATGATGGTT TTAATAGCTCGAAAGAACATGATGTAATGAGAAAGTTTAGGAACAAATCTCAAACGTTAATTTTATCAAGATTACCATCAACGTCATCCAAGATCTACTTACATTCAAGGCATGCTAGTCTACCAAATCCAAATACATGTAGTAATACTGTTATTATTGGTGATGGTATTAGCAGTCGTGAACATAGTTATGCTAACACTGGTGTTAATCATAGTCGACAAGAAAATCTGTCATTTCGTGTAAATAAAAAGATTCCATGTGATTATTTATGTAAGATACATCGTAATCTTAGTAATTCTTCAGACAGAAAGAATTCTGATATGCTAGATATGATTACTGAGTATTCACCGTATTATAATTTGTCGACA] [-] EMBL CD065800 [ GAAAGTTTAGGAACAAATCTCAAACGTTAATTTGATCAAGATTACCATCAACGTCATCCAAGATCTACTTACATTCAAGGCATGCTAGTCTACCAAATCCAAATACATGTAGTAATACTGTTATTATTGGTGATGGTATTAGCAGTCGTGAACATAGTTATGCTAACACTGGTGTTAATCATAGTCGACAAGAAAACCTGTCATTTCGTGTAAATAAAAAGATTCCATGTGATTATTTATGTAAGATACATCGTAATCTTAGTAATTCTTCAGACA ] consensusID : consensus_9000#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 435 fasta sequence [CTTTTTTTGTTCTCCATCTATACAACACCAGCAACGCCCACAGTTTGTTTCCCTCACCAACTATCTTACGAATACAGTGATAACGATAATATTAGCAATGTAGCAGAAATAGATAAAAAGGCGAGTGTCGATGAACAAACACTAGTTGACGGGGTTGGTACTATAGTATTAGCCGTAGAAAGAGGCGATTCAACGTCATCTTTTGGAGAACAAAAATTAGCACATATCAATGCTTGTAACAGCCCACCTGTTCTGTTGAAAAAATCGTTGTCATCAGATATAAATCTGCCAGAAATAGATCAAAAGGCGAGTGTCGATGAACAAACACTAGTTGACGGGGTTGGTACTATAGTATTAGCCGTAGAAAGAGGCGATTCAACGTCATCTTTTGGAGAACAAAAATTAGCACATATCAATGCTTGTAACAGCCCACCT] [+] EMBL CD187568 [CTTTTTTTGTTCTCCATCTATACAACACCAGCAACGCCCACAGTTTGTTTCCCTCACCAACTATCTTACGAATACAGTGATAACGATAATATTAGCAATGTAGCAGAAATAGATAAAAAGGCGAGTGTCGATGAACAAACACTAGTTGACGGGGTTGGTACTATAGTATTAGCCGTAGAAAGAGGCGATTCAACGTCATCTTTTGGAGAACAAAAATTAGCACATATCAATGCTTGTAACAGCCCACCTGTTCTGTTGAAAAAATCGTTGTCATCAGATATAAATCTGCCAGAAATAGATCAAAAGGCGAGTGTCGATGAACAAACACTAGTTGACGGGGTTGGTACTATAG ] [-] EMBL CD185206 [ aatgACAACACCAGCAACGCCCACAGTTTGTTTCCCTCACCAACTATCTAACGAATACAGTGATAACAATAATATTAGCAATGTAGCAGAAATAGATAAAAAGGCGAGTGTCGATGAACAAACACTAGTTGACGGGGTTGGTACTATAGTATTAGCCGTAGAAAGAGGCGATTCAACGTCATCTTTTGGAGAACAAAAATTAGCACATATCAATGCTTGTAACAGCCCACCTGTTCTGTTGAAAAAATCATTGTCATCAGATATAAATCTGCCAGAAATAGATAAAAAGGCGAGTGTCGATGAACAAACACTAGTTGACGGGGTTGGTACTATAGTATTAGCCGTAGAAAGAGGCGATTCAACGTCATCTTTTGGAGAACAAAAATTAGCACATATCAATGCTTGTAACAGCCCACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9000#0 GTATCAACGTCATCTTTTGGAGACAAAATTAGCACATATCAATGCTTGTAACAGCCCACC 60 consensus_9000#1 ------------------------------------------------------------ consensus_9000#0 TGTTCTGTTGAAAAAATCATTGTCATCAGATATAAATCTGCCAGAAATAATCGATAAACC 120 consensus_9000#1 --------------------CTTTTTTTGTTCTCCATCTATACAACACCAGCAACGCCCA 40 * * * * * **** * * * * * * consensus_9000#0 TAGTTCAATTATACCA--AACAATACTACAGCCACTACTTCTACTAATAGTGATAATAAT 178 consensus_9000#1 CAGTTTGTTTCCCTCACCAACTATCTTACGAATACAG----TGATAACGATAATATTAGC 96 **** ** ** *** ** *** ** * *** * *** ** consensus_9000#0 AATGATGGTTTTAATAGCTCGAAAGAACATGATGTAATGAGAAAGTTTAGG-AACAAATC 237 consensus_9000#1 AATG-TAGCAGAAATAGATAAAAAGGCGAGTGTCGATGAACAAACACTAGTTGACGGGGT 155 **** * * ***** * **** * * * * *** *** ** consensus_9000#0 TCAAACGTTAATTTTATCAAGATTACCATCAACGTCATCCAAGATCTACTTACATTCAAG 297 consensus_9000#1 TGGTACTATAGTATTAGCCGTAG----AAAGAGGCGATTCAACGTCATCTT----TTGGA 207 * ** ** * *** * * * * * ** *** ** *** * consensus_9000#0 GCATGCTAGTCTACCAAATCCAAATACATGTAGTAATACTGTTATTATTGGTGATGGTAT 357 consensus_9000#1 GAACAAAAAT-TAGCACATATCAATGCTTGTAACAGCCCACCTGTT-CTGTTGAAAAAAT 265 * * * * ** ** ** *** * **** * * * ** ** *** ** consensus_9000#0 TAGCAGTCGTGAACATAGTTATGCTAACACTGGTGTTAATCATAGTCGACAA-GAAAATC 416 consensus_9000#1 CGTTGTCATCAGATATAAATCTGCCAGAAATAGATCAAAAGGCGAGTGTCGATGAACAAA 325 * *** * *** * * * * ** * * * *** * consensus_9000#0 TGTCATTTCGTGTAAATAAAAAGATTCCATGTGATTATTTAT-GTAAGATACATCGTAAT 475 consensus_9000#1 CACTAGTTGACGGGGTT-----GGTACTATAGTATTAGCCGTAGAAAGAGGCGATTCAAC 380 * ** * * * * * ** **** * * **** * ** consensus_9000#0 CTTAGTAATTCTTCAGACAGAAAGAATTCTGATATGCTAGATATGATTACTGAGTATTCA 535 consensus_9000#1 ----GTCATCTTTTGGAGAACAAAAATTAGCACATATCAATGCTTGTAACAGCCCACCT- 435 ** ** ** ** * ** **** * ** * * * ** * * consensus_9000#0 CCGTATTATAATTTGTCGACA 556 consensus_9000#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||