These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9005#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 900 fasta sequence [TCGGCTCGAGGACGATATATCATCCTCTGGCTCTGAAACAGGCGATTGTTCTTCAAGTCCTAGCAAACACATAATCAGTGTGCACGATCGCAGAAAAAACTATAATAATAAACGCAAACATATTCCACGCTCCTCATCAGAGGATTCCCAAACATCTTCTTTCAGTGATGAACCTCGTTTTTCCCCGACTCATCATAATCCAGTAAAAACTAAAAGTGATCGCCGTCATTTATCACCGCCCTATGCCTACCGAATGGATTATAATAAGTCACATAAAAGCAAACATCGTTCATCATTGCGA-TCTGCACCAAATGGTGAAAGTGGTCGTATATTGCGTGAGCACTCTAACCATCGTCTAGTTTCGAGTCGACATCACGATCATCACCGAAGGTAAATTGTACATATGAATGATTTAATTTTACTCTGTACAAAAATTTTATGAGTATTAACTTTTTTCACTGGTTGCCTGTACGGTATGATTGATAGATTATCTACCAGATTGCAATAAATTATTTGCACTATCCTATCGTTTTGTGGTGTTTTACGTATTTTCAGTTCTTGTTTAAAAAATACCATTCAAAACGGATTCTTGAAAAATTATATTACTTTTGCGTTCCAGTCTTGGCAAGAAATTATATAAAATGTTTTAACATTGGAAACGTTTTCTTACTCTGCTAGTCGAAGTTTCAAATTGAATCCACTGTACTTTTCTTAATTGATTCTGGTATGTATCAGTATTGATGATATGCTTTCTCCACTACATCGGGTGATGTGCNAGTTTGTATAGTCTTCAGGAGATAGTCTGACGAATCCTCTAATTGATCACAGAATGAAGTATCGTCAANNTGACTCTCGTTTGGGCCTGAATAAACACGTNCTATGACAGGAGATAAGCTCTCA] [+] EMBL CD081468 [TCGGCTCGAGGACGATATATCATCCTCTGGCTCTGAAACAGGCGATTGTTCTTCAAGTCCTAGCAAACACATAATCAGTGTGCACGATCGCAGAAAAAACTATAATAATAAACGCAAACATATTCCACGCTCCTCATCAGAGGATTCCCAAACATCTTCTTTCAGTGATGAACCTCGTTTTTCCCCGACTCATCATAATCCAGTAAAAACTAAAAGTGATCGCCGTCATTTATCACCGCCCTATGCCTACCGAATGGATTATAATAAGTCACATAAAAGCAAACATCGTTCATCATTGCGA TCTGCACCAAATGGTGAAAGTGGTCGTATATTGCGTGAGCACTCTAACCATCGTCTAGTTTCGAGTCGACATCACGATCATCACCGAAGGTAAATTGTACATATGAATGATTTAATTTTACTCTGTACAAAAATTTTATGAGTATTAACTTTTTTCACTGGTTGCCTGTACGGTATGATTGATAGATTATCTACCAGATTGCAATAAATTATTTGCACTATCCTATCGTTTTGTGGTGTTTTACGTATTTTCAGTTCTTGTTTAAAAAATACCATTCAAAACGGATTCTTGAAAAATTATATTACTTTTGCGTTCCAGTCTTGGCAAGAAATTATATAAAATGTTTTAACATTGGAAACGTTTTCTTACTCTGCTAGTCGAAGTTTCAAATTGAATCCACTGTACTTTTCTTAATTGATTCTGGTATGTATCAGTATTGATGATATGCTTTCTCCACTACATCGGGTGATGTGCNAGTTTGTATAGTCTTCAGGAGATAGTCTGACGAATCCTCTAATTGATCACAGAATGAAGTATCGTCAANNTGACTCTCGTTTGGGCCTGAATAAACACGTNCTATGACAGGAGATAAGCTCTCA] [-] EMBL AI976628 [ ACGCTCCTCATCAGAGGATTCCCAAACATCTTCTTTCAGTGATGAACCTCGTTTTTCCCCGACTCATCATAATCCAGTAAAAACTAAAAGTGATCGCCGTCATTTATCACCGCCCTATGCCTACCGAATGGATTATAATAAGTCACATAAAAGCCAACATCGTTCATCATTGCGATTATGCCCCAAATGGTGAAAGTGGTCGTATATTGCGTGAGCACTATAACCATCGTCTAGTTTCGAGTGGACATCACGATCATCACCGAAGGTAAATTGTACATATGAATGATTTAATTTTACTCTGTACAAAAATTTTATGAGTATTAACTTTTTTCACTGGTTGCCTGTACGGTATGATTGATAGATTATCTACCAGATTGCAATAAATT ] [-] EMBL SMW791 [ ATGCCTACCGAATGGATTATAATAAGTCACATAAAAGCAAACATCGTTCATCATTGCGA TCTGCACCAAATGGTGAAAGTGGTCGTATATTGCGTGAGCACTCTAACCATCGTCTAGTTTCGAGTCGACATCACGATCATCACCGAAGGTAAATTGTACATATGAATGATTTAATTTTACTCTGTACAAAANTTTTATGAGTATTAACTTTTTTCACTGGTTGCCTGTACGGTATGATTGATAGATTATCTACCAGATTGCAATAAATT ] consensusID : consensus_9005#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 497 fasta sequence [TGTACGGTATGATTGATAGATTATCTACCAGATTGCAATAAATTATTTGCACTATCCTATCGTTTTGTGGTGTTTTACGTATTTTCAGTTCTTGTTTAAAAAATACCATTCAAAACGGATTCTTGAAAAATTATATTACTTTTGCGTTCCAGTCTTGGCAAGAAAATTATATAAAATGTTTTAACATTGGAAACGTTTTCTTACTCTGCTAGTCGAAGTTTCAAATTGAATCCACTGTACTTTTCTTTAATTGATTCTGTTAATGTATCAAGTATTGATTGATATGCTTTTCTCCAACTACCATCGGGTGGATGTGCAAGTTTTGTTATAAGTCTATCAAGGAGTATAAGTACTGAGCGAATTCGCTCTAAATTTGTATTCACCAGAGATGAAAGGTAATCGGTCAAAATTTGTACATCTTCGTTTTGGGGCACTGAAAATTAAAAACAACGTTTCTTATTGATCAATGATGTAATAAATGCTACTACTAATATATA] [-] EMBL CD075293 [TGTACGGTATGATTGATAGATTATCTACCAGATTGCAATAAATTATTTGCACTATCCTATCGTTTTGTGGTGTTTTACGTATTTTCAGTTCTTGTTTAAAAAATACCATTCAAAACGGATTCTTGAAAAATTATATTACTTTTGCGTTCCAGTCTTGGCAAGAAAATTATATAAAATGTTTTAACATTGGAAACGTTTTCTTACTCTGCTAGTCGAAGTTTCAAATTGAATCCACTGTACTTTTCTTTAATTGATTCTGTTAATGTATCAAGTATTGATTGATATGCTTTTCTCCAACTACCATCGGGTGGATGTGCAAGTTTTGTTATAAGTCTATCAAGGAGTATAAGTACTGAGCGAATTCGCTCTAAATTTGTATTCACCAGAGATGAAAGGTAATCGGTCAAAATTTGTACATCTTCGTTTTGGGGCACTGAAAATTAAAAACAACGTTTCTTATTGATCAATGATGTAATAAATGCTACTACTAATATATA] [-] EMBL CD076910 [ TCTTCAATTGATTCTGTTAATGAATCAAGTATTGATTGATATGCTTTTCTCCACCTACCATCGGGTGGATGTGCAAGTTTTGTTATAAGTCTATCAAGGAGTATAAGTACTGAGCGAATTCGCTCTAAATTTGTATTCACCAGAGATGAAAGGTAATCGGTCAAAATTTGTACATCTTCGTTTTGGGGCACTGAAAATTAAAAACAACGTTTCTTATTGATCAATGATGTAATAAATGCTACTAATAATATATA] consensusID : consensus_9005#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 420 fasta sequence [ATAATTCAATAAACTTATTGACAAATAACTCCAAATCTCGTAATTATCGACAAAAATTAAATGATATATCATCCTCTGGCTCTGAAACAGGCGATAGTTCTTCAAGTCCTAGCAAACACATAATCAGTGTGCACGATCGCAGAAAAAAACTATAATAATAAACGCAAACATATTCCACGCTCCTCATCAGAGGATTCCCAAACATCTTCTTTCA-GTGATGAACCTCGTTTTTCCCCGACTCATCATAATCCAGTAAAAACTAAAAGTGATCGCCGTCATTTATCACCGCCCTATGCCTACCGAATGGATTATAATAAGTCACATAAAAGCAAACATCGTTCATCATTGCGATCTGCACCAAATGGTGAAAGTGGTCGTATATTGCGTGAGCACTCTAACCATCGTCTAGTTTCGAGTCGA] [-] EMBL CD202251 [ATAATTCAATAAACTTATTGACAAATAACTCCAAATCTCGTAATTATCGACAAAAATTAAATGATATATCATCCTCTGGCTCTGAAACAGGCGATAGTTCTTCAAGTCCTAGCAAACACATAATCAGTGTGCACGATCGCAGAAAAAAACTATAATAATAAACGCAAACATATTCCACGCTCCTCATCAGAGGATTCCCAAACATCTTCTTTCA GTGATGAACCTCGTTTTTCCCCGACTCATCATAATCCAGTAAAAACTAAAAGTGATCGCCGTCATTTATCACCGCCCTATGCCTACCGAATGGATTATAATAAGTCACATAAAAGCAAACATCGTTCATCATTGCGATCTGCACCAAATGGTGAAAGTGGTCGTATATTGCGTGAGCACTCTAACCATCGTCTAGTTTCGAGTCGA] [-] EMBL CD060074 [ TGATATATCATCCTCTGGCTCTGAAACAGGCGATAGTTCTTCAAGTCCTAGCAAACACATAATCAGTGTGCACGATCGCA TAAAAAACTATAATAATAAACGCAAACATATTCCACGCTCCTCATCAGAGGATTCCCAACCGTGTTC CCCACCTGATGAACCTCGTTTTTCCCCGACCCAGCATAATCCAGTAAAAACTAAAAGTGACCGCCGTCATCTATCA ] consensusID : consensus_9005#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [GCGAATCGCTCTAAATTTGTATTCACCAGAGATGAAAGGTAATCGGTCAGAATTTGTACATCTTCGTTTTGGGGCACTGCTTCACTAGTTATCCAATCACCAAAAATTTGTTGAAGTTCTGTCAATGTTTTATTGGTGAACAAGCCACTCGGGTCTTCTATTGCCTGTGTTAAACAACCGAGTTGTGGTATTTCAGGTTTTATGGAGTTCATAGGAGTAGGTGTACTTATGTGTTTTGAAATGGTTTTACAATTCGCCTTTTGAAGACGTGCACTTTTGACTACCGATAATTTCCCTCCCTTACATACGCGCTTTGTCTGCAACTTTCTGCCATTCACTGATATGTTTCTTTGTTTTACTGGAGTTGTGATGGGCATATAATTTGAACTACATGATGTCACATTTTTC] [+] EMBL CD125905 [GCGAATCGCTCTAAATTTGTATTCACCAGAGATGAAAGGTAATCGGTCAGAATTTGTACATCTTCGTTTTGGGGCACTGCTTCACTAGTTATCCAATCACCAAAAATTTGTTGAAGTTCTGTCAATGTTTTATTGGTGAACAAGCCACTCGGGTCTTCTATTGCCTGTGTTAAACAACCGAGTTGTGGTATTTCAGGTTTTATGGAGTTCATAGGAGTAGGTGTACTTATGTGTTTTGAAATGGTTTTACAATTCGCCTTTTGAAGACGTGCACTTTTGACTACCGATAATTTCCCTCCCTTACATACGCGCTTTGTCTGCAACTTTCTGCCATTCACTGATATGTTTCTTTGTTTTACTGGAGTTGTGATGGGCATATAATTTGAACTACATGATGTCACATTTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9005#0 --------------------------------------------------------TCGG 4 consensus_9005#2 --------ATAATTCAATAAACTTATTGACAAATAACTCCAAATC--TCGTAATTATCGA 50 consensus_9005#1 TGTACGGTATGATT-GATAGATTATCTACCAGATTGCAATAAATTATTTGCACTATCCTA 59 consensus_9005#3 ------------------------------------------------------------ consensus_9005#0 CTCGAG---GACGATATATCATCCTCTGGCTCTGAAACAGGCGATTGTTCTTCAAG---- 57 consensus_9005#2 CAAAAATTAAATGATATATCATCCTCTGGCTCTGAAACAGGCGATAGTTCTTCAAG---- 106 consensus_9005#1 TCGTTTTGTGGTGTTTTACGTATTTTCAGTTCTTGTTTAAAAAATACCATTCAAAACGGA 119 consensus_9005#3 ----------------------------GCGAATCGCTCTAAATTTGTATTCACCAGAGA 32 * * * consensus_9005#0 TCCTAGCAAACACAT-AATCAGTGTGCA---CGATCGCAGAAAAAA-CTATAATAATAAA 112 consensus_9005#2 TCCTAGCAAACACAT-AATCAGTGTGCA---CGATCGCAGAAAAAAACTATAATAATAAA 162 consensus_9005#1 TTCTTGAAAAATTAT-ATTACTTTTGCGTTCCAGTCTTGGCAAGAAAATTATATAAAATG 178 consensus_9005#3 TGAAAGGTAATCGGTCAGAATTTGTACATCTTCGTTTTGG-GGCACTGCTTCACTAGTTA 91 * * ** * * * * * * * * * * consensus_9005#0 CGCAAACATATTCCACGCTCCTCATCAGAGGATTCCCAAACATCTTCTTTCAGTGATGAA 172 consensus_9005#2 CGCAAACATATTCCACGCTCCTCATCAGAGGATTCCCAAACATCTTCTTTCAGTGATGAA 222 consensus_9005#1 TTTTAACATTGGAAACGTTTTCTTACTCTGCTAGTCGAAGTTTCAAATTGAATCCACTGT 238 consensus_9005#3 TCCAATCACCAAAAATTTGTTGAAGTTCTGTCAAT---GTTTTATTGGTGAACAAGCCAC 148 * ** * * * * * consensus_9005#0 CCTCGTTTTTCCCCGACTCATCATAATCCAGTAAAAACTAAAAGTGATCGCCGTCATTTA 232 consensus_9005#2 CCTCGTTTTTCCCCGACTCATCATAATCCAGTAAAAACTAAAAGTGATCGCCGTCATTTA 282 consensus_9005#1 ACTTTTCTTTAATTGATTC-TGTTAATGTATCAAGTATTGATTGATATGCTTTTCTCCAA 297 consensus_9005#3 TCGGGTCTTCTATTGCCTG-TGTTAAACAACCGAGTTGTGGTATTTCAGGTTTTATGGAG 207 * * ** * * * *** * * * * consensus_9005#0 TCACCGCCCTATGCCTACCGAATGGATTATAATAAGTC-ACATAAAAGCAAACATCGTTC 291 consensus_9005#2 TCACCGCCCTATGCCTACCGAATGGATTATAATAAGTC-ACATAAAAGCAAACATCGTTC 341 consensus_9005#1 CTACCATCGGGTGGATGT-GCAAGTTTTGTTATAAGTCTATCAAGGAGTATAAGTACTGA 356 consensus_9005#3 TTCATAG-GAGTAGGTGT--ACTTATGTGTTTTGAAATGGTTTTACAATTCGCCTTTTGA 264 * * * * * * * * * consensus_9005#0 ATCATTGCGATCTG----------CACCAAATGGTGAAAGTGGTCGTATATTGCGTGAGC 341 consensus_9005#2 ATCATTGCGATCTG----------CACCAAATGGTGAAAGTGGTCGTATATTGCGTGAGC 391 consensus_9005#1 GCGAATTCGCTCTAAATTTGTATTCACCAGAGATGAAAGGTAATCGGTCAAAATTTGTAC 416 consensus_9005#3 AGACGTGCACTTTT--------------GACTACCGATAATTTCCCTCCCTTACATACGC 310 * * * * * * * * * consensus_9005#0 ACTCTAACCATCGTCTAGTTTCGAGTCGACATCACGATCATCACCG-AAGGTAAATTGTA 400 consensus_9005#2 ACTCTAACCATCGTCTAGTTTCGAGTCGA------------------------------- 420 consensus_9005#1 ATCTTCGTTTTGGGGCACTGAAAATTAAAAACAACGTTTCTTATTG-ATCAATGATGTAA 475 consensus_9005#3 GCTTTGTCTGCAACTTTCTGCCATTCACTGATATGTTTCTTTGTTTTACTGGAGTTGTGA 370 * * consensus_9005#0 CATATGAATGATTTAATTTTACTCTGTACAAAAATTTTATGAGTATTAACTTTTTTCACT 460 consensus_9005#2 ------------------------------------------------------------ consensus_9005#1 TAAATGCTACTACTAATATATA-------------------------------------- 497 consensus_9005#3 TGGGCATATAATTTGAACTACATGATGTCACATTTTTC---------------------- 408 consensus_9005#0 GGTTGCCTGTACGGTATGATTGATAGATTATCTACCAGATTGCAATAAATTATTTGCACT 520 consensus_9005#2 ------------------------------------------------------------ consensus_9005#1 ------------------------------------------------------------ consensus_9005#3 ------------------------------------------------------------ consensus_9005#0 ATCCTATCGTTTTGTGGTGTTTTACGTATTTTCAGTTCTTGTTTAAAAAATACCATTCAA 580 consensus_9005#2 ------------------------------------------------------------ consensus_9005#1 ------------------------------------------------------------ consensus_9005#3 ------------------------------------------------------------ consensus_9005#0 AACGGATTCTTGAAAAATTATATTACTTTTGCGTTCCAGTCTTGGCAAGAAATTATATAA 640 consensus_9005#2 ------------------------------------------------------------ consensus_9005#1 ------------------------------------------------------------ consensus_9005#3 ------------------------------------------------------------ consensus_9005#0 AATGTTTTAACATTGGAAACGTTTTCTTACTCTGCTAGTCGAAGTTTCAAATTGAATCCA 700 consensus_9005#2 ------------------------------------------------------------ consensus_9005#1 ------------------------------------------------------------ consensus_9005#3 ------------------------------------------------------------ consensus_9005#0 CTGTACTTTTCTTAATTGATTCTGGTATGTATCAGTATTGATGATATGCTTTCTCCACTA 760 consensus_9005#2 ------------------------------------------------------------ consensus_9005#1 ------------------------------------------------------------ consensus_9005#3 ------------------------------------------------------------ consensus_9005#0 CATCGGGTGATGTGCNAGTTTGTATAGTCTTCAGGAGATAGTCTGACGAATCCTCTAATT 820 consensus_9005#2 ------------------------------------------------------------ consensus_9005#1 ------------------------------------------------------------ consensus_9005#3 ------------------------------------------------------------ consensus_9005#0 GATCACAGAATGAAGTATCGTCAANNTGACTCTCGTTTGGGCCTGAATAAACACGTNCTA 880 consensus_9005#2 ------------------------------------------------------------ consensus_9005#1 ------------------------------------------------------------ consensus_9005#3 ------------------------------------------------------------ consensus_9005#0 TGACAGGAGATAAGCTCTCA 900 consensus_9005#2 -------------------- consensus_9005#1 -------------------- consensus_9005#3 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||