These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9019#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1177 fasta sequence [NNAAGTGAATCAACTTTAAACTGTCAACNACAGTCTGTGTGTAAACATGAGGAACTTAAAGACAGGGAGAAAGGTATTGGTGGACCATGTGAATCAACAAGAGCTGGTTCAAGCTCATTCACTCCCGACTCCGGCATTATCTCATCACTCCAAACGTCATGTGCACCAACAAACACTACACAAGGACACTCATTTATCAGACGGACATTACACAAACCAGCATACTGTCATCATTGTGGTGAAGTTATATGGGGCATTTTAAGTAGTGGTTTTCAATGTGAAATTTGCAACTTACTTGCACATGAACGTTGTCAAACCGTCGTGAGTTCTCCATGTACATCCGTCGCACCTCTTCAAATAAAGTCTCCAGTATCTCATTGTTGGTCTGATGTGGGTCGGTTCAAACGGAAATTTTGCAATGTTTGTCGCAAGCGCTTGGAAGATAGCCTTTCTGTAAGATGTGAAGTGTTCACCGCGTCAAACTCATCACTGGAGGGAGGGGAATTTACCAACCAATTCCAAGTGTTTCATATGTCGTAAGACATGCTGGTCATCTGAATGTCTTACAGGTTATCGTTGTCAATGGTGCGGTAGAACTAGTCATGCAGGATGTATAGAGAAAGTGGAAGATGAATGTGACTTCGGTCCCTTACGAGATATCATGTTACCGTCATTCTGTGTTAGTCTTCCACGAATGAATATTCCTATTGAACATGTGATCGGTGTAACTAAACGTCCACGAGGTCGAGCTATTTCAGCTGATTGGTCAAGCAGTGGGGAAAGCAAAGAGGATAGTTGGCAAGATACACGATCTCCAAGAGAAACTATAGACCGTGCTAGTAGTGATGAATATGTATATGTATTCGATGGCGTTGGAGCTTTAAAAAGACGTTCATGTCGAAGTTTCAGTTTTTCCAAATCCATGTCTACATATTCGGCAGTTAAACGGTTTTTGAAAACATTTCATTTAGCTGGTACGCCTGATTATTACAATGTGTATGAAGTTAATGAACATGATGGAACTGAAAACAAACTTAATTATCATGTAAATCTTCGTAATCAATTGAGATTTGATTTAAAACAACCTTCCATATTGATTCGATCTAAAGAACCGGAGGAATCAACGATTACCATTAAAGTGTACGCTGGGGATTTACGTTTACTACTTGCTCCTTAT] [-] EMBL CD189018 [NNAAGTGAATCAACTTTAAACTGTCAACNACAGTCTGTGTGTAAACATGAGGAACTTAAAGACAGGGAGAAAGGTATTGGTGGACCATGTGAATCAACAAGAGCTGGTTCAAGCTCATTCACTCCCGACTCCGGCATTATCTCATCACTCCAAACGTCATGTGCACCAACAAACACTACACAAGGACACTCAT ] [+] EMBL CD146749 [ AAAGACAGGGAGAAAGGTATTGGTGGACCATGTGAATCAACAAGAGCTGGTTCAAGCTCATTCACTCCCGACTCCGGCATTATCTCATCACTCCAAACGTCATGTGCACCAACAAACACTACACAAGGACACTCATTTATCAGACGGACATTACACAAACCAGCATACTGTCATCATTGTGGTGAAGTTATATGGGGCATTTTAAGTAGTGGTTTTCA ] [-] EMBL CD168887 [ ATCAGACGGACATTACACAAACCAGCATACTGTCATCATTGTGGTGAAGTTATATGGGGCATTTTAAGTAGTGGTTTTCAATGTGAAATTTGCAACTTACTTGCACATGAACGTTGTCAAACCGTCGTGAGTTCTCCATGTACATCCGTCGCACCTCTTCAAATAAAGTCTCCAGTATCTCATTGTTGGTCTGATGTGGGTCGGTTCAAACGGAAATTTTGCAATGTTTGTCGCAAGCGCTTGGAAGATAGCCTTTCTGTAAGATGTGAAGTGTTCACCGCGTCAAACTCATCACTGGAGGGAGGGGAATTTAC ] [+] EMBL CD111530 [ CATCCGTCGCACCTCTTCAAATAAAGTCTCCAGTATCTCATTGTTGGTCTGATGTGGGTCGGTTCAAACGGAAATTTTGCAATGTTTGTCGCAAGCGCTTGGAAGATAGCCTTTCTGTAAGATGTGAAGTGTTCACCGCGTCAAACTCATCACTGGAGGGAGGGGAATTTACCAACCAATTCCAAGTGTTTCATATGTCGTAAGACATGCTGGTCATCTGAATGTCTTACAGGTTATCGTTGTCAATGGTGCGGTAGAACTAGTCATGCAGGATGTATAGAGAAAGTGGAAGATGAATGTGACTTCGGTCCCTTACGAGATATCATGTTACCGTCATTCTGTGTTAGTCTTCCACG ] [+] EMBL CD178399 [ CAACCAATTCCAAGTGTTTCATATGTCGTAAGACATGCTGGTCATCTGAATGTCTTACAGGTTATCGTTGTCAATGGTGCGGTAGAACTAGTCATGCAGGATGTATAGAGAAAGTGGAAGGTGAATGTGACTTCGGTCCCTTACGAGATATCATGTTACCGTCATTCTGTGTTAGTCTTCCACGAATGAATATTCCTATTGAACATGTGATCGGTGTAACTAAACGTCCACGAGGTCGAGCTATTTCAGCTGATTGGTCAAGCAGTGGGGAAAGCAAAGAGGATAGTTGGCAAGATACACGATCTCCAAGAGAAACTATAGACCGTGCTAGTAGTGATGAATATGTATATGTATTCGATGGCGTTGGAGCTTTAAAAAGACGTTCATGTCGAAGTTTCAGTTTTTCCAAATCCATGTCTACATATTCGGCAGTTAAACGGTTTTTGAAAACATTTCATTTAGCTGGTACGCCTGATTATTACAATGTGTATGAAGTTAATGAACATGATGGAACTGAAAACAAACTTAATTATCATGTAAATCTTCGTAATCAATTGAGATTTGA ] [+] EMBL CD062289 [ ATGTTACCGTCATTCTGTGTTAGTCTTCCACGAATGAATATTCCTATTGAACATGTGATCGGTGTAACTAAACGTCCACGAGGTCGAGCTATTTCAGCTGATTGGTCAAGCAGTGGGGAAAGCAAAGAGGATAGTTGGCAAGATACACGATCTCCAAGAGAAACTATAGACCGTGCTAGTAGTGATGAATATGTATATGTATTCGATGGCGTTGGAGCTTTAAAAAGACGTTCATGTCGAAGTTTCAGTTTTTCCAAATCCATGTCTACATATTCGGCAGTTAAACGGTTTTTGAAAACATTTCATTTAGCTGGTACGCCTGATTATTACAATGTGTATGAAGTTAATGAACATGATGGAACTGAAAACAAACTTAATTATCATGTAAATCTTCGTAATCAATTGAGATTTGATTTAAAACAACCTTCCATAT ] [-] EMBL CD170019 [ CTTTAAAAAGACGTTCATGTCGAAGTTTCAGTTTTTCCAAATCCATGTCTACATATTCGGCAGTTAAACGGTTTTTGAAAACATTTCATTTAGCTGGTACGCCTGATTATTACAATGTGTATGAAGTTAATGAACATGATGGAACTGAAAACAAACTTAATTATCATGTAAATCTTCGTAATCAATTGAGATTTGATTTAAAACAACCTTCCATATTGATTCGATCTAAAGAACCGGAGGAATCAACGATTACCATTAAAGTGTACGCTGGGGATTTACGTTTACTACTTGCTCCTTAT] consensusID : consensus_9019#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [AGGACACTCATTTATCAGACGGACATTACACAAACCAGCATACTGTCATCATTGTGGTGAAGTTATATGGGGCATTTTAAGTAGTGGTTTTCAATGTGAAAGTAAGTAACTTGGTCCTTGAGATTAATATACTATACAAAATCACTGGACCCCTGCCACTCTGCATTTTTAGTAGGCTATACCGCGATACAAACTGTAATTAGGAAGTTGAAGGGTGGGACTATCATTTATGAATAACCTTTAAGCGACGCTAGGCTGACTTTGAAGACGTCCACTTAATAACTAGGACCAAATGAGGGTTATAAACTTGTGTGTGGGA] [-] EMBL CD196074 [AGGACACTCATTTATCAGACGGACATTACACAAACCAGCATACTGTCATCATTGTGGTGAAGTTATATGGGGCATTTTAAGTAGTGGTTTTCAATGTGAAAGTAAGTAACTTGGTCCTTGAGATTAATATACTATACAAAATCACTGGACCCCTGCCACTCTGCATTTTTAGTAGGCTATACCGCGATACAAACTGTAATTAGGAAGTTGAAGGGTGGGACTATCATTTATGAATAACCTTTAAGCGACGCTAGGCTGACTTTGAAGACGTCCACTTAATAACTAGGACCAAATGAGGGTTATAAACTTGTGTGTGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9019#0 NNAAGTGAATCAACTTTAAACTGTCAACNACAGTCTGTGTGTAAACATGAGGAACTTAAA 60 consensus_9019#1 ------------------------------------------------------------ consensus_9019#0 GACAGGGAGAAAGGTATTGGTGGACCATGTGAATCAACAAGAGCTGGTTCAAGCTCATTC 120 consensus_9019#1 ------------------------------------------------------------ consensus_9019#0 ACTCCCGACTCCGGCATTATCTCATCACTCCAAACGTCATGTGCACCAACAAACACTACA 180 consensus_9019#1 ------------------------------------------------------------ consensus_9019#0 CAAGGACACTCATTTATCAGACGGACATTACACAAACCAGCATACTGTCATCATTGTGGT 240 consensus_9019#1 --AGGACACTCATTTATCAGACGGACATTACACAAACCAGCATACTGTCATCATTGTGGT 58 ********************************************************** consensus_9019#0 GAAGTTATATGGGGCATTTTAAGTAGTGGTTTTCAATGTGAAATTTGCAACTTACTTGCA 300 consensus_9019#1 GAAGTTATATGGGGCATTTTAAGTAGTGGTTTTCAATGTGAAA---GTAAGTAACTTGGT 115 ******************************************* * ** * ***** consensus_9019#0 CATGAACGTTGTCAAACCGTCGTGAGTTCTCCATGTACATCCGTCGCACCTCTTCAAATA 360 consensus_9019#1 CCTTGAGATTAATATACTAT-ACAAAATCAC--TGGACCCCTGCCAC---TCTGCATTTT 169 * * * ** * ** * * ** * ** ** * * * * *** ** * consensus_9019#0 AAGTCTCCAGTATCTCATTGTTGGTCTGATGTGGGTCGGTTCAAACGGAAATTTTGCAAT 420 consensus_9019#1 TAGTAGGCTATACCGCGATAC-AAACTGTAATTAGGAAGTTGAAGGGTGGGACT---ATC 225 *** * ** * * * *** * * *** ** * * * consensus_9019#0 GTTTGTCGCAAGCGCTTGGAAGATAGCCTTTCTGTAAGATGTGAAGTGTTCACCGCGTCA 480 consensus_9019#1 ATTTATGAATAACCTTTAAGCGAC-GCTAGGCTG--ACTTTGAAGACGTCCACTTAATAA 282 *** * * * ** ** ** *** * * * ** *** * * consensus_9019#0 AACTCATCACTGGAGGGAGGGGAATTTACCAACCAATTCCAAGTGTTTCATATGTCGTAA 540 consensus_9019#1 CTAGGACCAAATGAGGGTTATAAACTTGTGTGTGGGA----------------------- 319 * ** ***** ** ** consensus_9019#0 GACATGCTGGTCATCTGAATGTCTTACAGGTTATCGTTGTCAATGGTGCGGTAGAACTAG 600 consensus_9019#1 ------------------------------------------------------------ consensus_9019#0 TCATGCAGGATGTATAGAGAAAGTGGAAGATGAATGTGACTTCGGTCCCTTACGAGATAT 660 consensus_9019#1 ------------------------------------------------------------ consensus_9019#0 CATGTTACCGTCATTCTGTGTTAGTCTTCCACGAATGAATATTCCTATTGAACATGTGAT 720 consensus_9019#1 ------------------------------------------------------------ consensus_9019#0 CGGTGTAACTAAACGTCCACGAGGTCGAGCTATTTCAGCTGATTGGTCAAGCAGTGGGGA 780 consensus_9019#1 ------------------------------------------------------------ consensus_9019#0 AAGCAAAGAGGATAGTTGGCAAGATACACGATCTCCAAGAGAAACTATAGACCGTGCTAG 840 consensus_9019#1 ------------------------------------------------------------ consensus_9019#0 TAGTGATGAATATGTATATGTATTCGATGGCGTTGGAGCTTTAAAAAGACGTTCATGTCG 900 consensus_9019#1 ------------------------------------------------------------ consensus_9019#0 AAGTTTCAGTTTTTCCAAATCCATGTCTACATATTCGGCAGTTAAACGGTTTTTGAAAAC 960 consensus_9019#1 ------------------------------------------------------------ consensus_9019#0 ATTTCATTTAGCTGGTACGCCTGATTATTACAATGTGTATGAAGTTAATGAACATGATGG 1020 consensus_9019#1 ------------------------------------------------------------ consensus_9019#0 AACTGAAAACAAACTTAATTATCATGTAAATCTTCGTAATCAATTGAGATTTGATTTAAA 1080 consensus_9019#1 ------------------------------------------------------------ consensus_9019#0 ACAACCTTCCATATTGATTCGATCTAAAGAACCGGAGGAATCAACGATTACCATTAAAGT 1140 consensus_9019#1 ------------------------------------------------------------ consensus_9019#0 GTACGCTGGGGATTTACGTTTACTACTTGCTCCTTAT 1177 consensus_9019#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||