These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9040#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 976 fasta sequence [CCAATCGAATCTCCCTGATCATCCCAACTTGCTTCCCTGTATCGCGAGTGGCCTACAACATGTCTCTAGACGTGAACAAGGAGCTATTTCAGAAGTTCTTTTGGTGTTATCTTATAGCAAGCGAGGTACATTGCAACGTGAAATTGACCATAGATCTGCACGTAATGATATGTTCCCCTTGTACCTCATAAAGACCATGATGATTGGTATTTGCGATGGCCTTATTGCTCTTCTTTCTCTTGATATTCCAATGTCTCATCGAGATATAAAGCCTGGGAATGTTCTTTTGTTTGAAGAAATGAGACCAGTTTTAATGGATTTTGG--CTGTTACTCCATCCATTCTTCCTATTGAGAACATTAGAGACGCAGAAAAATGGAAGGAGTTTGCTGAGGAAAACTGTTCACTAACTTATCGGGCTCCAGAGTTGTTTAATCCAATAACTCACGAAAACATAACCGAGAAAGCTGATGTTTGGTCCCTAGGATGTTTGTTGTATGCTTTGATTTTCTTCAAATCCCCAATGGATTTC-GTTCATGCTCGGGGTGACAGCGTTGCTCTTGC-TGCTTGTTCAGCTAATATACATTTCCCAATAGACTCGTGTTCAAATGTTCCACCAGAA-TGGATAAAGTTAAT-GGAAGCAATGCTGTCCGCTAATCCTCAAGATCGTCCTTCACTTACTCAAATTGTGGAGTCCTTCAAAAACGTACCTGAAGAAATCATGTATTGTAATAATCAAAGTGCAATAACTTATT-CGTTGTAATTTCGACTCAGCTTGACTAAATCCCACATGAAATCTATCCGTAAAACATTTACTCTTTTACTCTTCTTTTATACTATTTACAAAATACTGAGAAGTCTTTCTAAACTTTTTACCTTCACTTTTATTCTCTGTACTTTTTAATATTCCACATAATATTGCATAGAATTGCAGGACGGTTTTGGTTTTTCGTTCGAAAATGAAATATAACTAAATAT] [+] EMBL CD078815 [CCAATCGAATCTCCCTGATCATCCCAACTTGCTTCCCTGTATCGCGAGTGGCCTACAACATGTCTCTAGACGTGAACAAGGAGCTATTTCAGAAGTTCTTTTGGTGTTATCTTATAGCAAGCGAGGTACATTGCAACGTGAAATTGACCATAGATCTGCACGTAATGATATGTTCCCCTTGTACCTCATAAAGACCATGATGATTGGTATTTGCGATGGCCTTATTGCTCTTCTTTCTCTTGATATTCCAATGTCTCATCGAGATATAAAGCCTGGGAATGTTCTTTTGTTTGAAGAAATGAGACCAGTTTTAATGGATTTTGG CTGTTACTCCATCCATTCTTCCTATTGAGAACATTAGAGACGCAGAAAAATGGAAGGAGTTTGCTGAGGAAAACTGTTCACTAACTTATCGGGCTCCAGAGTTGTTTAATCCAATAACTCACGAAAACATAACCGAGAAAGCTGATGTTTGGTCCCTAGGATGTTTGTTGTATGCTTTGATTTTCTTCANATCCCCAATGGATTTC GTTCATGCTCGGNGTGACAGCGTTGCTCTTGC TGCTTGTTCAGCTAATATACATTTCCCAATAGACTCGTGTTCANATG ] [+] EMBL SMAA25637 [ aggaagAATGGATTTTGGCTCTGTTACTCCATCCATTCTTCCTATTGAGAACATTAGAGACGCAGAAAAATGGAAGGAGTTTGCTGAGGAAAACTGTTCACTAACTTATCGGGCTCCAGAGTTGTTTAATCCAATAACTCACGAAAACATAACCGAGAAAGCTGATGTTTGGTCCCTAGGATGTTTGTTGTATGCTTTGATTTTCTTCAAAT CCCGATGGATTTCGGTTCATGCTCGGGGTGACAGCGTTGCTCTTGCTTGCTTGTTCAGCTAATATACATTTCCCAATAGACTCGTGTTCAAATGTTCCACCAGAAGTGGATAAAGTTAATCGGAAGCAATGCTGTCCGCTAATCCTCAAGATCGTCCTTCACTTACTCAAATTGTGGAGT CTTC AAAACGT GCTAGAGAAATCATGGAATGGTATAATCAAAGTGCAATAAC TATTCCGTTGTAA TTCGAATCAGCTg ] [-] EMBL CD073276 [ GAAGGAGTTTGCTGAGGAAAACTGTTCACTAACTTATCGGGCTCCAGAGTTGTTTAATCCAATAACTCACGAAAACATAACCGAGAAAGCTGATGTTTGGTCCCTAGGATGTTTGTTGTATGCTTTGATTTTCTTCAAATCCCCAATGGATTTC GTTCATGCTCGGGGTGACAGCGTTGCTCTTGC TGCTTGTTCAGCTAATATACATTTCCCAATAGACTCGTGTTCAAATGTTCCACCAGAA TTGATAAAGTTAAT GGAAGCAATGCTGTCCGCTAATCCTCAAGATCGTCCTTCACTTACTCAAATTGTGGAGTCCTTCAAAAACGTACCTGAAGAAATCATGTATTGTAATAATCAAAGTGCAATAACTTATT CGTTGTAATTTCGACTCAGCTTGACTAAATCCCACATGAAATCTATCCGTAAAACATTTACTCTTTTACTCTTCTTTTATACTATTTACAAAATACTGAGAAGTCTTTCTAAACTTTTTACCTTCACTTTTATTCTCTGTACTTTTTAATATTCCACATAATATTGCATAGAATTGCAGGACGGTTTTGGTTTTTCGTTCGAAAATGAAATATAACTAA ] [-] EMBL AA999345 [ AGTCCTTCAAAAACGTTCCTGAAGAAATCATGTATTGTAATAATCAAAGTGCAATAACTTATT CGTTGTAATTTCGACTCAGCTTGACTTAATCCCATTTGAAATCTATCCGTAAAACATTTACTCTTTTACTCTTCTTTTATACTATTTACAAAATACTGAGAAGTCTTTCTAAACTTTTTACCTTCACTTTTATTCTCTGTACTTTTTAATATTCCACATAATATTGCATAGAATTGCAGGACGGTTTTGGTTTTTCGTTCGAAAATGAAATATAACTAAATAT] consensusID : consensus_9040#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [AAATTGAATGTATGGTTCTGAGAAGATTTTGTCTTGTGGNTTGTACAGACCCATGTAGTGAAGCTGTTCGAGTAAAGGATGCATCAGGACATTGGAAAACGTTTTACGTGCGCTATAAGTTAGATACCGGGTATGTTTATAAGGTTTTCTAATAATGGAAGTTTTTAGGGGATTTAGCCGAATAGATCTTATTTTTGACAAAGGGTCTAAAAGATCATTCGCTTTAATACGTATCCTATGTCATTCAAAGGATGATGAAAGTAAGGCTTTAAAGGAAGCTAATTTCCAATCGAATCTCCCTGATCATCCCGACTTGCTTCCCTGTATCGCGAGTGGCCTACAACATGTCTCTAGACGTGAACAAGGAGCTATTTCAGAAGTTCTTTTGGTGTTATCTTATAGCAAGGTATGTCTTAATATATGTCAGATGAAATATTACAGCGAGGTACACTGCACGTGAAATTGACCATAGATCTGCACGTAATGATATGTTCCCCTTGTACCTCAT] [-] EMBL CD064448 [AAATTGAATGTATGGTTCTGAGAAGATTTTGTCTTGTGGNTTGTACAGACCCATGTAGTGAAGCTGTTCGAGTAAAGGATGCATCAGGACATTGGAAAACGTTTTACGTGCGCTATAAGTTAGATACCGGGTATGTTTATAAGGTTTTCTAATAATGGAAGTTTTTAGGGGATTTAGCCGAATAGATCTTATTTTTGACAAAGGGTCTAAAAGATCATTCGCTTTAATACGTATCCTATGTCATTCAAAGGATGATGAAAGTAAGGCTTTAAAGGAAGCTAATTTCCAATCGAATCTCCCTGATCATCCCGACTTGCTTCCCTGTATCGCGAGTGGCCTACAACATGTCTCTAGACGTGAACAAGGAGCTATTTCAGAAGTTCTTTTGGTGTTATCTTATAGCAAGGTATGTCTTAATATATGTCAGATGAAATATTACAGCGAGGTACACTGCACGTGAAATTGACCATAGATCTGCACGTAATGATATGTTCCCCTTGTACCTCAT] consensusID : consensus_9040#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [GTGTAGCATTCCATAAAACANNTTTTTCCTCTCCTTCATTTAATTTTTCAGTGTTCCACCAGAATTGATAAAGTTAATGGAAGCAATGCTGTCCGCTAATCCTCAAGATCGTCCTTCACTTACTCAAATTGTGGAGTCCTTCAAAAACGTACCTGAAGAAATCATGTATTGTAATAATCAAAGTGCAATAACTTATTCGTNGTAATTTCGACTCAGCTTGACTAAATCCCACATGAAATCTATCCGTAAAACATTTACTCTTTTACTCTTCTCTTATACTATTTACAAAATACTGAGAAGTCTTTCTAAACNNTTTACCTTCACTNTTATTCTCTGTACNTNATAATATTCCACATAATATTGCATAGAATTGCAGGACGGTTTTGGTTTNTCGTTCGAAAATGAAATATAACTAAATA] [-] EMBL SMAA18466 [GTGTAGCATTCCATAAAACANNTTTTTCCTCTCCTTCATTTAATTTTTCAGTGTTCCACCAGAATTGATAAAGTTAATGGAAGCAATGCTGTCCGCTAATCCTCAAGATCGTCCTTCACTTACTCAAATTGTGGAGTCCTTCAAAAACGTACCTGAAGAAATCATGTATTGTAATAATCAAAGTGCAATAACTTATTCGTNGTAATTTCGACTCAGCTTGACTAAATCCCACATGAAATCTATCCGTAAAACATTTACTCTTTTACTCTTCTCTTATACTATTTACAAAATACTGAGAAGTCTTTCTAAACNNTTTACCTTCACTNTTATTCTCTGTACNTNATAATATTCCACATAATATTGCATAGAATTGCAGGACGGTTTTGGTTTNTCGTTCGAAAATGAAATATAACTAAATA] consensusID : consensus_9040#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [GAAGCAAGTTGGGATGATCAGGGAGATTCGATTGGAAATTAGCTTCCTTTAAAGCCTTACTTTCATCATCCTTTGAATGACATAGGATACGTTTTAAAGCGAATGATCTTTTATACCCTTTGTCAAAAATAAGATCTATTCGGCTAAATCCACTAAAAACCGGTATCTAACTTATAGCGCACGTAAAACGTTTTCCAATGTCCTGATGCATCCTTTACTCGAACAGCTTCACTACATGGGTCTGTACAACCCACAAGACAAAATCTTCTCAGAACCATACATTCAATTTGAATTCGTCAACGTTAAAGATTC] [+] EMBL CD157897 [GAAGCAAGTTGGGATGATCAGGGAGATTCGATTGGAAATTAGCTTCCTTTAAAGCCTTACTTTCATCATCCTTTGAATGACATAGGATACGTTTTAAAGCGAATGATCTTTTATACCCTTTGTCAAAAATAAGATCTATTCGGCTAAATCCACTAAAAACCGGTATCTAACTTATAGCGCACGTAAAACGTTTTCCAATGTCCTGATGCATCCTTTACTCGAACAGCTTCACTACATGGGTCTGTACAACCCACAAGACAAAATCTTCTCAGAACCATACATTCAATTTGAATTCGTCAACGTTAAAGATTC] consensusID : consensus_9040#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 141 fasta sequence [AGAGTATTTACAAAACAATGACAAGTCTTTATAAACTTTTTACCTTCACTTTTATTCTCTGTACTTTTTAATATCCCACATAATATTGCATAGAATTGCAGGACGGTATTGGCTCTTCGTTCGAAAATGGAATATACCTTG] [-] EMBL CD073275 [AGAGTATTTACAAAACAATGACAAGTCTTTATAAACTTTTTACCTTCACTTTTATTCTCTGTACTTTTTAATATCCCACATAATATTGCATAGAATTGCAGGACGGTATTGGCTCTTCGTTCGAAAATGGAATATACCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9040#2 ------------------------------------------------------------ consensus_9040#4 ------------------------------------------------------------ consensus_9040#0 CCAATCGAATCTCCCTGATCATCCCAACTTGCTTCCCTGTATCGCGAGTGGCCTACAACA 60 consensus_9040#1 ------------------------------------------------------------ consensus_9040#3 ------------------------------------------------------------ consensus_9040#2 ------------------------------------------------------------ consensus_9040#4 ------------------------------------------------------------ consensus_9040#0 TGTCTCTAGACGTGAACAAGGAGCTATTTCAGAAGTTCTTTTGGTGTTATCTTATAGCAA 120 consensus_9040#1 ------------------------------------------------------------ consensus_9040#3 ------------------------------------------------------------ consensus_9040#2 ------------------------------------------------------------ consensus_9040#4 ------------------------------------------------------------ consensus_9040#0 GCGAGGTACATTGCAACGTGAAATTGACCATAGATCTGCACGTAATGATATGTTCCCCTT 180 consensus_9040#1 ------------------------------------------------------------ consensus_9040#3 ------------------------------------------------------------ consensus_9040#2 ------------------------------------------------------------ consensus_9040#4 ------------------------------------------------------------ consensus_9040#0 GTACCTCATAAAGACCATGATGATTGGTATTTGCGATGGCCTTATTGCTCTTCTTTCTCT 240 consensus_9040#1 ------------------------------------------------------------ consensus_9040#3 ------------------------------------------------------------ consensus_9040#2 ------------------------------------------------------------ consensus_9040#4 ------------------------------------------------------------ consensus_9040#0 TGATATTCCAATGTCTCATCGAGATATAAAGCCTGGGAATGTTCTTTTGTTTGAAGAAAT 300 consensus_9040#1 ------------------------------------------------------------ consensus_9040#3 ------------------------------------------------------------ consensus_9040#2 ------------------------------------------------------------ consensus_9040#4 ------------------------------------------------------------ consensus_9040#0 GAGACCAGTTTTAATGGATTTTGGCTGTTACTCCATCCATTCTTCCTATTGAGAACATTA 360 consensus_9040#1 ------------------------------------------------------------ consensus_9040#3 ------------------------------------------------------------ consensus_9040#2 ------------------------------------------------------------ consensus_9040#4 ------------------------------------------------------------ consensus_9040#0 GAGACGCAGAAAAATGGAAGGAGTTTGCTGAGGAAAACTGTTCACTAACTTATCGGGCTC 420 consensus_9040#1 ------------------------------------------------------------ consensus_9040#3 ------------------------------------------------------------ consensus_9040#2 ------------------------------------------------------------ consensus_9040#4 ------------------------------------------------------------ consensus_9040#0 CAGAGTTGTTTAATCCAATAACTCACGAAAACATAACCGAGAAAGCTGATGTTTGGTCCC 480 consensus_9040#1 ------------------------------------------------------------ consensus_9040#3 ------------------------------------------------------------ consensus_9040#2 ------------------------------------------------------------ consensus_9040#4 ------------------------------------------------------------ consensus_9040#0 TAGGATGTTTGTTGTATGCTTTGATTTTCTTCAAATCCCCAATGGATTTCGTTCATGCTC 540 consensus_9040#1 ---------------------AAATTGAATGTATGGTTCTGAGAAGATTTTGTCTTGTGG 39 consensus_9040#3 ------------------------------------------------------------ consensus_9040#2 ----------------GTGTAGCATTCCATAAAACANN-TTTTTCCTCTCCTTCATTTAA 43 consensus_9040#4 ------------------------------------------------------------ consensus_9040#0 GGGGTGACAGCGTTGCTCTTGCTGCTTGTTCAGCTAAT-ATACATTTCCCAATAGACTCG 599 consensus_9040#1 NTTGTACAGACCCATGTAGTGAAGCTGTTCGAGTAAAGGATGCATCAGGACATTGGAAAA 99 consensus_9040#3 ------------------------------------------------------------ consensus_9040#2 TTTTTCAGTGTTCCACCAGAATTGATAAAGTTAATGGAAGCAATGCTGTCCGCTAATCCT 103 consensus_9040#4 ------------------------------------------------------------ consensus_9040#0 TGTTCAAATGTTCCACCAGAATGGATAAAGTTAATGGAAGCAATGCTGTCCGCTAATCCT 659 consensus_9040#1 CGTTTTACGTGCGCTATAAGTTAGATACCGGGTATGTTTATAAGGTTTTCTAATAATG-- 157 consensus_9040#3 ------------------------------------------------------------ consensus_9040#2 CAAGATCGTCCTTCACTTACTCAAATTGTGGAGTCCTTCAAAAACGTACCTGAAGAAATC 163 consensus_9040#4 ------------------------------------------------------------ consensus_9040#0 CAAGATCGTCCTTCACTTACTCAAATTGTGGAGTCCTTCAAAAACGTACCTGAAGAAATC 719 consensus_9040#1 GAAGTTTTTAGGGGATTTAGCCGAATAGATCTTATTTTTGACAAAGGGTCT-AAAAGATC 216 consensus_9040#3 -----------------GAAGCAAGTTGGGATGATCAGGGAGATTCGATT--GGAAATTA 41 consensus_9040#2 ATGTATTGTAATA---ATCAAAGTGCAATAACTTATTCGTNGTAATTTCGACTCAGCTTG 220 consensus_9040#4 ------------------------------------------------------------ consensus_9040#0 ATGTATTGTAATA---ATCAAAGTGCAATAACTTATTCGTTGTAATTTCGACTCAGCTTG 776 consensus_9040#1 ATTCGCTTTAATACGTATCCTATGTCATTCAAAGGATGATGAAAGTAAGGCTTTAAAGGA 276 consensus_9040#3 GCTTCCTTTAAAGCCTTACTTTCATCATCCTTTGAATGACATAGGATACGTTTTAAAGCG 101 consensus_9040#2 ACTAAATCCCACATGAAATCTATCCGTAAAACATTTACTCTTTTACTCTTCTCTTATACT 280 consensus_9040#4 -------------------------------------------------------AGAGT 5 consensus_9040#0 ACTAAATCCCACATGAAATCTATCCGTAAAACATTTACTCTTTTACTCTTCTTTTATACT 836 consensus_9040#1 AGCTAATTTCCAATCGAATCTCCCTG-ATCATCCCGACTTGCTTCCCTGTATCGCGAGTG 335 consensus_9040#3 AATGATCTTTTATACCCTTTGTCAAAAATAAGATCTATTCGGCTAAATCCACTAAAAACC 161 consensus_9040#2 ATTTACAAAAT-------------ACTGAGAAGTCTTTCTAAA---CNNTTTACCTTCAC 324 consensus_9040#4 ATTTACAAAAC-------------AATGACAAGTCTTTATAAA---CTTTTTACCTTCAC 49 consensus_9040#0 ATTTACAAAAT-------------ACTGAGAAGTCTTTCTAAA---CTTTTTACCTTCAC 880 consensus_9040#1 GCCTACAACATGTCTCTAGACGTGAACAAGGAGCTATTTCAGAAGTTCTTTTGGTGTTAT 395 consensus_9040#3 GGTATCTAACTTATA------GCGCACGTAAAACGTTTTCCAA---TGTCCTGATGCATC 212 * * * ** * * consensus_9040#2 TNTTATTCTCTGTACNTNATAATATTC--CACAT--AATATTGCATAGAATTGCAGGAC- 379 consensus_9040#4 TTTTATTCTCTGTACTTTTTAATATCC--CACAT--AATATTGCATAGAATTGCAGGAC- 104 consensus_9040#0 TTTTATTCTCTGTACTTTTTAATATTC--CACAT--AATATTGCATAGAATTGCAGGAC- 935 consensus_9040#1 CTTATAGCAAGGTATGTCTTAATATATGTCAGATGAAATATTACAGCGAGGTACACTGCA 455 consensus_9040#3 CTTTACTCGAACAGCTTCACTACATGGG-TCTGT---ACAACCCACAAGACAAAATCTTC 268 * * * * ** * * * ** * consensus_9040#2 ---GGTTTTGGTTTNTCGTTCGAAAATGA-AATATAACTAAATA--------- 419 consensus_9040#4 ---GGTATTGGCTCTTCGTTCGAAAATGG-AATATACCTTG------------ 141 consensus_9040#0 ---GGTTTTGGTTTTTCGTTCGAAAATGA-AATATAACTAAATAT-------- 976 consensus_9040#1 CGTGAAATTGACCATAGATCTGCACGTAATGATATGTTCCCCTTGTACCTCAT 508 consensus_9040#3 TCAGAACCATACATTCAATTTGAATTCGTCAACGTTAAAGATTC--------- 312 * * * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||