These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 658 fasta sequence [GGCTCACGGAACTCTCATGATCATTAACTTATATGTCTCATATATATTTAATTATGGATTAACTTCTTTTTTATTCAAACAGCTGCTCCAGCAATTTATAGTAGTGGATCCATTACTTATACAACAAATGATGAAATGTCATTACAATGTACTGATGAATCATCTTCACCTGAATCAAAAGTAGACTGGATATTTGAACCATCTGGTAAAATGCCACCAGAACGTAGATTACCAAAATTATTTGGAAATACATATGCTTATGGAAGAATTTATATATTTGCTATTGCAAGAGGTCAACTAATCCCGGAACATTCAGGAAAGTACACATGTATAGCTACAAATCCTTATGGAACAGCTAATAGTTCAATTACAGTAACAGTAACTGAAGATCTTTCACGTGGAAAACTTCGTTT-TGTTCGAAGAATAATTCGTCGTGCATTTTCTGGATAAACGATTAATGATGAAAGAAAAAAAGAAAAGAAAGAAAAGAAAAAGAGAAAAGAAAATAAAGAAAAGAAAAATCCCACATATGACTTAATTGATTATTATTGATTATTTAG---TATTATTATTATTAATCATTGATAGTTATAAACGCACACACACACACCTTCATATTAGAAATCGATAATTAATGAATGAAATAAGAAAAAAACTACAC] [+] EMBL CD065595 [GGCTCACGGAACTCTCATGATCATTAACTTATATGTCTCATATATATTTAATTATGGATTAACTTCTTTTTTATTCAAACAGCTGCTCCAGCAATTTATAGTAGTGGATCCATTACTTATACAACAAATGATGAAATGTCATTACAATGTACTGATGAATCATCTTCACCTGAATCAAAAGTAGACTGGATATTTGAACCATCTGGTAAAATGCCACCAGAACGTAGATTACCAAAATTATTTGGAAATACATATGCTTATGGAAGAATTTATATATTTGCTATTGCAAGAGGTCAACTAATCCCGGAACATTCAGGAAAGTACACATGTATAGCTACAAATCCTTATGGAACAGCTAATAGTTCAATTACAGTAACAGTAACTGAAGATCTTTCACGTGGAAAACTTCGTTT TGTTCGAAGAATAATTCGTCGTGCATTTTCTGGATAAACGATTAATGATGAAAGAAAACAAGAAAAGAAAGAAAAGAAA ] [+] EMBL CD135542 [ CTGGTAAAATGCCACCAGAACGTAGATTACCAAAATTAATTGGAAATACATATGCTTATGGAAGAATTTATATATTTGCTATTGCAAGAGGTCAACTAATCCCGGAACATTCAGGAAAGTACACATGTATAGCTACAAATCCTTATGGAACAGCTAATAGTTCAATTACAGTAACAGTAACTGAAGATCTTTCACGTGGAAAACTTCGTTT TGTTCGAAGAATAATTCGTCGTGCATTTTCTGGATNAACGATTAATGATGAAAGGAAAAAAGAAAAGAAAGAAAAGAAAAAGAGAAAAGAAAATAAAGAAAAGAAAAATCCCACATATGACTTAATTGATTATTATTGATTATTTAG TATTATTATTATTAATCATTGATAGTTATA ] [-] EMBL CD065478 [ CACATGTATAGCTACAAATCCTTATGGAACAGCTAATAGTTCAATTACAGTAACAGTAACTGAAGATCTTTCACGTGGAAAACTTCGTTT TGTTCGAAGAATAATTCGTCGTGCATTTTCTGGATAAACGATTAATGATGAAAGAAAAAAAGAAAAGAAAGAAAAGAAAAAGAGAAAAGAAAATAAAGAAAAGAAAAATCCCACATATGACTTAATTGATTATTATTGATTATTTAGTATTATTATTATTATTAATCATTGATAGTTATAAACGCACACACACACACCTTCATATTAGAAATCGATAATTAATGAATGAAATAAGAAAAAAACTACAC] [-] EMBL CD065671 [ CACATGTATAGCTACAAATCCTTATGGAACAGCTAATAGTTCAA TACAGTAACAGTAACTGAAGATCTT ACGTGG AAACTTCGTTTCTGT ] consensusID : consensus_9051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 394 fasta sequence [CTGAAGATATTACTGGTTGGAGAACTAATCAATTACAGTTAAATAAGTTACGTTTACCAAGTACAACTTTATCAGATGAATCAATTTATGAAGTACGATGTGTTGCATCTTATAATGATACTTATAATACATCATCACATCCATTCATTATTAATGTGAGAAATAAACCAATGATCAAATCAATACGTATAGATCGTGTAAAACCAGATGAATCTATTCTAGAACCAGCTGATTTACCTAAAGATTCATATGATTCAACACAAGATTATGAACTTGGATGTAAACCGGAAGTGACTTCAGGCGAAGCTGTCGCGACATGGTTTAAATGT-CAAAATGATGATTGTACTTCATTAAAAGAAATTGTATTAACTGGTGATGCGGGTACCGAGAACGA] [+] EMBL CD139716 [CTGAAGATATTACTGGTTGGAGAACTAATCAATTACAGTTAAATAAGTTACGTTTACCAAGTACAACTTTATCAGATGAATCAATTTATGAAGTACGATGTGTTGCATCTTATAATGATACTTATAATACATCATCACATCCATTCATTATTAATGTGAGAAATAAACCAATGATCAAATCAATACGTATAGATCGTGTAAAACCAGATGAATCTATTCTAGAACCAGCTGATTTACCTAAAGATTCATATGATTCAACACAAGATTATGAACTTGGATGTAAACCGGAAGTGACTTCAGGCGAAGCTGTCGCGACATGGTTTAAATGT CAAAATGATGAT ] [+] EMBL CD139682 [CTGAAGATATTACTGGTTGGAGAACTAATCAATTACAGTTAAATAAGTTACGTTTACCAAGTACAACTTTATCAGATGAATCAATTTATGAAGTACGATGTGTTGCATCTTATAATGATACTTATAATACATCATCACATCCATTCATTATTAATGTGAGAAATAAACCAATGATCAAATCAATACGTATAGATCGTGTAAAACCAGATGAATCTATTCTAGAACCAGCTGATTTACCTAAAGATTCATATGATTCAACACAAGATTATGAACTTGGATGNTAACCGGAAGTGACTTCAGGCGAAGCGGTCGCGACATGGTTTAAATGTNCAAA ] [-] EMBL CD128787 [ TCAATTTATGAAGTACGATGTGTTGCATCTTATAATGATACTTATAATACATCATCACATCCATTCATTATTAATGTGAGAAATAAACCAATGATCAAATCAATACGTATAGATCGTGTAAAACCAGATGAATCTATTCTAGAACCAGCTGATTTACCTAAAGATTCATATGATTCAACACAAGATTATGAACTTGGATGTAAACCGGAAGTGACTTCAGGCGAAGCTGTCGCGACATGGTTTAAATGT CAAAATGATGATTGTACTTCATTAAAAGAAATTGTATTAACTGGTGATGCGGGTACCGAGAACGA] consensusID : consensus_9051#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence [TTNNAAATGTCAAAATGATGATTGTACTTCATTAAAAGAAATTGTATTAACTGGTGATAGATTATTTTACTTTGCTAATTCAACAAGATATATAGATGAAGGAAGATTTAGATGTCAAGTTAGTTTACAATTAAAAGAATATAATTTTAAACTTATTGAACATCAAGATGTCATCATTAAACGTCAAGCTGCTCCAGCAATTTATAGTAGTGGATCCATTACTTATACAACAAATGATGAAATGTCATTACAATGTACTGATGAATCATCTTCGCCTGAATCAAAAGTAGACTGGATATTTGAACCATCTGGTAAAATGCCACCAGAACGTAGATTAC] [-] EMBL CD139566 [TTNNAAATGTCAAAATGATGATTGTACTTCATTAAAAGAAATTGTATTAACTGGTGATAGATTATTTTACTTTGCTAATTCAACAAGATATATAGATGAAGGAAGATTTAGATGTCAAGTTAGTTTACAATTAAAAGAATATAATTTTAAACTTATTGAACATCAAGATGTCATCATTAAACGTCAAGCTGCTCCAGCAATTTATAGTAGTGGATCCATTACTTATACAACAAATGATGAAATGTCATTACAATGTACTGATGAATCATCTTCGCCTGAATCAAAAGTAGACTGGATATTTGAACCATCTGGTAAAATGCCACCAGAACGTAGATTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9051#0 ------------------------------------------------------------ consensus_9051#2 TTNNAAATGTCAAAATGATGATTGTACTTCATTAAAAGAAATTGTATTAACTGGTGATAG 60 consensus_9051#1 -----------------CTGAAGATATTAC-TGGTTGGAGAACTAATCAATTACAGTTAA 42 consensus_9051#0 ---------------------------------GGCTCACGGAACTCTCATG-ATCA--T 24 consensus_9051#2 ATTATTTTACTTTGCTAATTCAACAAGATATATAGATGAAGGAAGATTTAGATGTCAAGT 120 consensus_9051#1 ATAAGTTACGTTTACCAAGT--ACAACTTTATCAGATGAATCAA--TTTATGAAGTACGA 98 * * * ** * * * consensus_9051#0 TAACTTATATGTCTCA---TATATATTTAA--TTATGGATTA-----ACTTCTTTTTTAT 74 consensus_9051#2 TAGTTTACAATTAAAAGAATATAATTTTAAACTTATTGAACATCAAGATGTCATCATTAA 180 consensus_9051#1 TGTGTTGCATCTTATA-ATGATACTTATAA--TACATCATCACATCCAT-TCATTATTAA 154 * ** * * * *** * *** * * * * ** * *** consensus_9051#0 TCAAACAGCTGCTCCAGCAATTTATAGTAGTGGATCCATTACTTATACAACAAATGATGA 134 consensus_9051#2 ACGTCAAGCTGCTCCAGCAATTTATAGTAGTGGATCCATTACTTATACAACAAATGATGA 240 consensus_9051#1 TGTGAGAAATAAACCAATGATC-AAATCAATACGTATAGATCGTGTAAAACCA--GATGA 211 * * *** ** * * * * * * * * ** *** * ***** consensus_9051#0 AATGTCATTACAATGTACTGATGAATC---ATCTTCACCTGAATCAAAAGTAGACTGGAT 191 consensus_9051#2 AATGTCATTACAATGTACTGATGAATC---ATCTTCGCCTGAATCAAAAGTAGACTGGAT 297 consensus_9051#1 ATCTATTCTAGAACCAGCTGATTTACCTAAAGATTCATATGATTCAACACAAGATTATGA 271 * ** ** ***** * * * *** *** **** * *** * consensus_9051#0 ATTTGAACCATCTGGTAAAATGCCACCAGAACGTAGATTAC-CAAAATTATTTGGAAATA 250 consensus_9051#2 ATTTGAACCATCTGGTAAAATGCCACCAGAACGTAGATTAC------------------- 338 consensus_9051#1 ACTTGGATGTAAACCGGAAGTGACTTCAGG-CGAAGCTGTCGCGACATGGTTTAAATGTC 330 * *** * ** ** * *** ** ** * * consensus_9051#0 CATATGCTTATGGAAGAATTTATATATTTGCTATTGCAAGAGGTCAACTAATCCCGGAAC 310 consensus_9051#2 ------------------------------------------------------------ consensus_9051#1 AAAATGATGATTGTACTTCATTAAAAGAAATTGTATTAACTGGTGATGCGGGTACCGAGA 390 consensus_9051#0 ATTCAGGAAAGTACACATGTATAGCTACAAATCCTTATGGAACAGCTAATAGTTCAATTA 370 consensus_9051#2 ------------------------------------------------------------ consensus_9051#1 ACGA-------------------------------------------------------- 394 consensus_9051#0 CAGTAACAGTAACTGAAGATCTTTCACGTGGAAAACTTCGTTTTGTTCGAAGAATAATTC 430 consensus_9051#2 ------------------------------------------------------------ consensus_9051#1 ------------------------------------------------------------ consensus_9051#0 GTCGTGCATTTTCTGGATAAACGATTAATGATGAAAGAAAAAAAGAAAAGAAAGAAAAGA 490 consensus_9051#2 ------------------------------------------------------------ consensus_9051#1 ------------------------------------------------------------ consensus_9051#0 AAAAGAGAAAAGAAAATAAAGAAAAGAAAAATCCCACATATGACTTAATTGATTATTATT 550 consensus_9051#2 ------------------------------------------------------------ consensus_9051#1 ------------------------------------------------------------ consensus_9051#0 GATTATTTAGTATTATTATTATTAATCATTGATAGTTATAAACGCACACACACACACCTT 610 consensus_9051#2 ------------------------------------------------------------ consensus_9051#1 ------------------------------------------------------------ consensus_9051#0 CATATTAGAAATCGATAATTAATGAATGAAATAAGAAAAAAACTACAC 658 consensus_9051#2 ------------------------------------------------ consensus_9051#1 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||