These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9077#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 633 fasta sequence [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTT-----TTTTTTTTAAGAATGGGATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAAACTATTTACATGATTCAGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGATAATTGATGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGGCTTGCTTTAAATCGATAGCCCCAGCATTTGCGGCATGTTTTAGCATTGCATATTCACCAGAAACATGATAAACTGCTAGAGGATGATGAGGTAGCAACTGTCGTAGCTCATTCACAATATCCAGATAAGGAAGACCAGGTTTTACCATTATGAAGTCAGCTCCTTCGTTCGCATCGCGAATAGCAGCACGTATAGCCAATCCTTTGTCACCAGGAGGAAGCTGGTAATGCCGACGGTCTCCAAAAGAAGGTGCAGATTGAGCAGCATCTCTGAAAGGACCGTACAAACAAGATGCAAATTTGGCTGAATAAG] [+] EMBL AI975825 [TACGCAGTACGGTAATGCAGCTGCATGGCATG TTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTAAGAATGGGATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCACCGAATAAGTCAATCTAAACTATTTACATGATTCAGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGATAATTGATGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGGCTTGCTTTAAATCGATAGCCCCAGCATTTGCGGCATGTTTTAACATTGCATATTCACCAGAAACATGATAAACTGCTAGAGGATGATGAGGTAGCAACTGTCGTAGCTCATTCACAATATCCAGATAAGGAAGACCAGGTTTTACCATTATGAAGTCAGCTCCTTCGTTCGCATCGCGAATAGCAGCACGTATAGCCAATCCTTTGTCACCAGGAGGAAGC ] [+] EMBL AI976301 [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTAAGAATGGGATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAAACTATTTACATGATTCAGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGATAATTGATGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGGCTTGCTTTAAATCGATAGCCCCAGCATTTGCGGCATGTTTTAGCATTGCATATTCACCAGAAACATGATAAACTGCTAGAGGATGATGAGGTAGCAACTGTCGTAGCTCATTCACAATATCCAGATAAGGAAGACCAGGTTTTA ] [+] EMBL AI395744 [ TTTTTTTTTTTTTTTTTTTTTTTTTAAAGCTAATAGATAAGAATGGGATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAAACTATTTACATGATTCAGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGATAATTGATGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGG TTGCTTTAAATCGATAG CCCAG ATTTGCGG ATGTTTTAGCA TGCATATCCACAAG AACATGAT AACTGCTAGA GATGATGA ] [+] EMBL CD074648 [ ATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAAACTATTTACATGATTCAGATAAATCAAGTTCTAGTAGGTACGGGGTTAAATATGTTATGATAATTGATGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGGCTTGCTTTAAATCGATAGCCCCAGCATTTGCGGCATGTTTTAGCATTGCATATTCACCAGAAACATGATAAACTGCTAGAGGATGATGAGGTAGCAACTGTCGTAGCTCATTCACAATATCCAGATAAGGAAGACCAGGTTTTACCATTATGAAGTCAGCTCCTTCGTTCGCATCGCGAATAGCAGCACGTAGAGCCAATCCTTTGGCACCAGGAGGAAGCTGGTAATGCCGACGGTCTCCAAAAGAAGGTGCAGATTGAGCAGCATCTCTGAAAGGACCGTACAAACAAGATGCAAATTTGGCTGAATAAG] [-] EMBL CD158564 [ CGATAGCCCCAGCATTTGCGGCATGTTTTAGCATTGCATATTCACCAGAAACATGATAAACTGCTAGAGGATGATGAGGTAGCAACTGTCGTAGCTCATTCACAATATCCAGATAAGGAAGACCAGGTTTTACCATTATGAAGTCAGCTCCTTCGTTCGCATCGCGAATAGCAGCACG ] consensusID : consensus_9077#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 460 fasta sequence [TTTTTTTTTTTTTTTTTCCTATACTAGTAATTTATTAATAAACTAGGATAATAAACACAGATACAGAAAGATGAGAATTAAAGCTAATAGATAAGAATGGGATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAAACTATTTACATGATTC-AGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGATATTTGAGGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGGCTTGCTTTAAATCGATAGCCCCAGCATTTTGCGGATGTTTTAGCATTGCATATTCAACCAGAAACATGATAAACTGGCTAGAGATGATGAGGTAGCAACTGGTCGTACTCAT] [+] EMBL AI394889 [TTTTTTTTTTTTTTTTTCCTATACTAGAAACTTATGAAGAAACTAGGATAATAATTACAGATACAGAAAGATGAGAATTAAAGCTAATAGATAAGAATGGGATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAAACTATTTACATGATTC AGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGATATTTGAG ] [+] EMBL AI395123 [TTTTTTTTTTTTTTTTTCCTATACTAGTAATTTATTAATAAACTAGGATAATAAACACAGATACAGAAAGATGAGAATTAAAGCTAATAGATAAGAATGGGATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAAACTATTTACATGATTCAAGATAA ] [+] EMBL AI395085 [ TTTTATTTTTTTTCCTATACTAGTAATTTATTAATAAACTAGGATAATAAACACAGATACAGAAAGATGAGAATTAAAGCTAATAGATAAGAATGGGATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAAACTATTTACATGATTC AGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGATAATTGATGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGGCTTGCTTTAAATCGATAGCCCCAGCATTTTGCGGATGTTTTAGCATTGCATATTCAACCAGAAACATGATAAACTGGCTAGAGATGATGAGGTAGCAACTGGTCGTACTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9077#0 ---------------------TAC--GCAGTACGGTAATGCAGCTGCATGGCATGTTTTT 37 consensus_9077#1 TTTTTTTTTTTTTTTTTCCTATACTAGTAATTTATTAATAAACTAGGATAATAAACACAG 60 *** * * * **** * * ** * consensus_9077#0 TTTTTTTTTTTTTTTTTTT----TTTTTTTTTAAGAATGGGATATTTTCTTAGAGAATAT 93 consensus_9077#1 ATACAGAAAGATGAGAATTAAAGCTAATAGATAAGAATGGGATATTTTCTTAGAGAATAT 120 * * ** * * ***************************** consensus_9077#0 ACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAG 153 consensus_9077#1 ACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAG 180 ************************************************************ consensus_9077#0 GTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAA 213 consensus_9077#1 GTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAA 240 ************************************************************ consensus_9077#0 ACTATTTACATGATTCAGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGA 273 consensus_9077#1 ACTATTTACATGATTCAGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGA 300 ************************************************************ consensus_9077#0 TAATTGATGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGGCTTGCTTTAAAT 333 consensus_9077#1 TATTTGAGGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGGCTTGCTTTAAAT 360 ** **** **************************************************** consensus_9077#0 CGATAGCCCCAGCATTTGCGGCATGTTTTAGCATTGCATATTCA-CCAGAAACATGATAA 392 consensus_9077#1 CGATAGCCCCAGCATTTTGCGGATGTTTTAGCATTGCATATTCAACCAGAAACATGATAA 420 ***************** * ********************** *************** consensus_9077#0 ACTGCTAGAGGATGATGAGGTAGCAACTG-TCGTAGCTCATTCACAATATCCAGATAAGG 451 consensus_9077#1 ACTGGCTAGAGATGATGAGGTAGCAACTGGTCGTA-CTCAT------------------- 460 **** ******************* ***** ***** consensus_9077#0 AAGACCAGGTTTTACCATTATGAAGTCAGCTCCTTCGTTCGCATCGCGAATAGCAGCACG 511 consensus_9077#1 ------------------------------------------------------------ consensus_9077#0 TATAGCCAATCCTTTGTCACCAGGAGGAAGCTGGTAATGCCGACGGTCTCCAAAAGAAGG 571 consensus_9077#1 ------------------------------------------------------------ consensus_9077#0 TGCAGATTGAGCAGCATCTCTGAAAGGACCGTACAAACAAGATGCAAATTTGGCTGAATA 631 consensus_9077#1 ------------------------------------------------------------ consensus_9077#0 AG 633 consensus_9077#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||