These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9095#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1036 fasta sequence [TCCGAGGCCAGAATTCGGCACGAGGTCAATCGGCAACGTGTCGCCGCAGATAGTCATAACGTTTTAGCTCAGTCCAAGTAGGTACATGCATATGGATTTTGTCAAGGTCTGGGAAACAGAATATTCTCATTCAGTATCAAAACTTGAAGTCATCGTGTCAGCTATGTTTTGGTTCTAGCGCCAGAATTTTAACTGGTTTTAAATCTGTTAGTTGAAGTTCTGACAAATCGAATTTGCTTGGATCTGTGATCTGGACATGATTGTATACACCGTTATGATCTGTAGACAAAAGCATAAAGTGACAGCATTCGTCTTATTGCGACCAGATTAATAAGTTTACATAGTTGCTACTGTGAGGGTATTTGTTGTATTCTATGTAGTACTTATTTCTTGTACGAGCTTGGCATAATATAGTGTCTGTGTACTCTACTTTTAATCTGTTAATTTCAACAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCCCAGCTAAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGAACGCTGGGAAAATCCAC-TGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAATTTTTCATGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATTGCTCACATTTTTCTTGTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAATAAATATTGTAGAAATATAAATTGAGTATAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACT] [+] EMBL CD080369 [TCCGAGGCCAGAATTCGGCACGAGGTCAATCGGCAACGTGTCGCCGCAGATAGTCATAACGTTTTAGCTCAGTCCAAGTAGGTACATGCATATGGATTTTGTCAAGGTCTGGGAAACAGAATATTCTCATTCAGTATCAAAACTTGAAGTCATCGTGTCAGCTATGTTTTGGTTCTAGCGCCAGAATTTTAACTGGTTTTAAATCTGTTAGTTGAAGTTCTGACAAATCGAATTTGCTTGGATCTGTGATCTGGACATGATTGTATACACCGTTATGATCTGTAGACAAAAGCATAAAGTGACAGCATTCGTCTTATTGCGACCAGATTAATAAGTTTACATAGTTGCTACTGTGAGGGTATTTGTTGTATTCTATGTAGTACTTATTTCTTGTACGAGCTTGGCATAATATAGTGTCTGTGTACTCTACTTTTAATCTGTTAATTTCAACAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCCCAGCTAAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGCACGCTGGGAACATCCACNTGATGGGT ] [-] EMBL CD074285 [ CGTC TATTGCGACCAGATTAATAAGTTTACATAGTTGCTACTGTGAGGGTATTTGTTGTATTCTATGTAGTACTTATTTCTTGTACGAGCTTGGCATAATATAGTGTCTGTGTACTCTACTTTTAATCTGTTAATTTCAACAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCCCAGCTAAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGAACGCTGGGAAAATCCAC TGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAATTTTTCATGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATTGCTCACATTTTTCTTGTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAATAAATATTGTAGAAATATAAATTGAGTAT ] [-] EMBL CD074465 [ TTA TGCGACCAGATTAATAAGTTTACATAGTTGCTACTGTGAGGGTATATGTTGTATTCTATGTAGTACTTATTTCTTGTACGAGCTTGGCATAATATAGTGTCTGTGTACTGTACTTTTAATCTGTTAATTTCAACAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCCCAGCTAAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGAACGCTGGGAAAATCCAC TGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAATTTTTCATGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATTGCTCACATTTTTCTTGTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAATAAATATTGTAGAAATATAAATTGAGTAT ] [-] EMBL AA999312 [ ATTGAGTTCGACAATCGCGAACGCTGGGAAAATCCAC TGATGGGTTGGGCGAGCACCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAATTTTTCATGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATNGCTCACATTTTTCTTGTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAATAAATATTGTAGAAATATAAAT ] [-] EMBL BF936814 [ AGATCCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAATTTTTCATGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATTGCTCACATTTTTCTTGTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAATAAATATTGTAGAAATATAAATTGAGTATAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACT] consensusID : consensus_9095#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 549 fasta sequence [CCTTAATTAAAGTGGGCGTTACTCGTCCTATGTTTTTAAATGTTCACCACTAAACTTCCAAGAGGATTGTCTCTTTATGAACCACTGTATCAATCCATAAGATGGAAAGTCAGTAAGGGAATACCTGCGAAAATGACTTTCGAACTTCGGAAGAAACTAGCAGAGACGGATGACCCATGGTTTCGAACCAGGCTAGTTGATTCAACTGAAGAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTCGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCACAGCTAAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGAACGCTGGGAAAATCCACTGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTANAA] [+] EMBL CD200607 [CCTTAATTAAAGTGGGCGTTACTCGTCCTATGTTTTTAAATGTTCACCACTAAACTTCCAAGAGGATTGTCTCTTTATGAACCACTGTATCAATCCATAAGATGGAAAGTCAGTAAGGGAATACCTGCGAAAATGACTTTCGAACTTCGGAAGAAACTAGCAGAGACGGATGACCCATGGTTTCGAACCAGGCTAGTTGATTCAACTGAAGAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTCGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTA ] [-] EMBL BG932284 [ cggAATTAAAGTGGGCGTTACTCGTCCTATGTTTTTAAATGTTCACCACTAAACTTCCAAGAAGATTGTCTCTTTATGAACCACTGTATCAATCCATAAGATGGAAAGTCAGTAAGGGAATACCTGCGAAAATGACTTTCGAACTTCGGAAGAAACTAGCAGAGACGGATGACCCATGGTTTCGAACCAGGCTAGTTGATTCAACTGAAGAGGCGc ] [+] EMBL CD201397 [ GGCGTTACTCGTCCTATGTTTTTAAATGTTCACCACTAAACTTCCAAGAGGATTGTCTCTTTATGAACCACTGTATCAATCCATAAGATGGAAAGTCAGTAAGGGAATACCTGCGAAAATGACTTTCGAACTTCGGAAGAAACTAGCAGAGACGGATGACCCATGGTTTCGAACCAGGCTAGTTGATTCAACTGAAGAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCACAGCTAAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGAACGCTGGGAAAATCCACTGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTANAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9095#0 TCCGAGGCCAGAATTCGGCACGAGGTCAATCGGCAACGTGTCGCCGCAGATAGTCATAAC 60 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 GTTTTAGCTCAGTCCAAGTAGGTACATGCATATGGATTTTGTCAAGGTCTGGGAAACAGA 120 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 ATATTCTCATTCAGTATCAAAACTTGAAGTCATCGTGTCAGCTATGTTTTGGTTCTAGCG 180 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 CCAGAATTTTAACTGGTTTTAAATCTGTTAGTTGAAGTTCTGACAAATCGAATTTGCTTG 240 consensus_9095#1 --------------------------------------------------------CCTT 4 * * consensus_9095#0 GATCTGTGATCTGGACATGATTGTATACACCGTTATGATCTGTAGACAAAAGCATAAAGT 300 consensus_9095#1 AAT---TAAAGTGGGCGTTACT-CGTCCTATGTTTTTAAATGTTCACCACTAAACTTC-C 59 ** * * *** * * * * * * *** * * *** ** * * consensus_9095#0 GACAGCATTCGTCTTATTGCGACCAGATTAATAAGTTTACATAGTTGCTACT--GTGAGG 358 consensus_9095#1 AAGAGGATT-GTCTCTTTATGAACCACTGTATCAATCCATAAGATGGAAAGTCAGTAAGG 118 * ** *** **** ** ** * * ** * * * * * * * * ** *** consensus_9095#0 GTATTTGTTGTATTCTATGTAGTACTTATTTCTTGTACGAGCTTGGCATAATATAGTG-T 417 consensus_9095#1 GAATACCTGCGA----AAATGACTTTCGAACTTCGGAAGAAACTAGCAGAGACGGATGAC 174 * ** * * * * * * * * ** * *** * ** consensus_9095#0 CTGTGTACTCTACTT---TTAATCTGTTAATTTCAACAGGCGAAACATATTATGAAGAAA 474 consensus_9095#1 CCATGGTTTCGAACCAGGCTAGTTGATTCAACTGAAGAGGCGAAACATATTATGAAGAAA 234 * ** ** * ** * ** * * ** *********************** consensus_9095#0 TCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCG 534 consensus_9095#1 TCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTCGACGCCG 294 **************************************************** ******* consensus_9095#0 GTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCCCAGCT 594 consensus_9095#1 GTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCACAGCT 354 ****************************************************** ***** consensus_9095#0 AAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAAT 654 consensus_9095#1 AAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAAT 414 ************************************************************ consensus_9095#0 CGCGAACGCTGGGAAAATCCACTGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAAT 714 consensus_9095#1 CGCGAACGCTGGGAAAATCCACTGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAAT 474 ************************************************************ consensus_9095#0 ACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGG 774 consensus_9095#1 ACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGG 534 ************************************************************ consensus_9095#0 CCATGTTACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAAT 834 consensus_9095#1 CCATGTTACGTANAA--------------------------------------------- 549 ************ ** consensus_9095#0 TTTTCATGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATTGCTCACATT 894 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 TTTCTTGTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAA 954 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 TAAATATTGTAGAAATATAAATTGAGTATAAAAAAAAAAAAAAAAAAAAAAAAAACATGC 1014 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 CATGCAGCTGCATTACCGTACT 1036 consensus_9095#1 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||