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Schistosoma mansoni
cluster # 9095 cluster # 9095       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9095#0 length = 1036 sequences # 5  
consensus_9095#1 length = 549 sequences # 3  

consensusID : consensus_9095#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1036
fasta sequence
                              [TCCGAGGCCAGAATTCGGCACGAGGTCAATCGGCAACGTGTCGCCGCAGATAGTCATAACGTTTTAGCTCAGTCCAAGTAGGTACATGCATATGGATTTTGTCAAGGTCTGGGAAACAGAATATTCTCATTCAGTATCAAAACTTGAAGTCATCGTGTCAGCTATGTTTTGGTTCTAGCGCCAGAATTTTAACTGGTTTTAAATCTGTTAGTTGAAGTTCTGACAAATCGAATTTGCTTGGATCTGTGATCTGGACATGATTGTATACACCGTTATGATCTGTAGACAAAAGCATAAAGTGACAGCATTCGTCTTATTGCGACCAGATTAATAAGTTTACATAGTTGCTACTGTGAGGGTATTTGTTGTATTCTATGTAGTACTTATTTCTTGTACGAGCTTGGCATAATATAGTGTCTGTGTACTCTACTTTTAATCTGTTAATTTCAACAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCCCAGCTAAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGAACGCTGGGAAAATCCAC-TGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAATTTTTCATGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATTGCTCACATTTTTCTTGTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAATAAATATTGTAGAAATATAAATTGAGTATAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACT]

[+] EMBL CD080369             [TCCGAGGCCAGAATTCGGCACGAGGTCAATCGGCAACGTGTCGCCGCAGATAGTCATAACGTTTTAGCTCAGTCCAAGTAGGTACATGCATATGGATTTTGTCAAGGTCTGGGAAACAGAATATTCTCATTCAGTATCAAAACTTGAAGTCATCGTGTCAGCTATGTTTTGGTTCTAGCGCCAGAATTTTAACTGGTTTTAAATCTGTTAGTTGAAGTTCTGACAAATCGAATTTGCTTGGATCTGTGATCTGGACATGATTGTATACACCGTTATGATCTGTAGACAAAAGCATAAAGTGACAGCATTCGTCTTATTGCGACCAGATTAATAAGTTTACATAGTTGCTACTGTGAGGGTATTTGTTGTATTCTATGTAGTACTTATTTCTTGTACGAGCTTGGCATAATATAGTGTCTGTGTACTCTACTTTTAATCTGTTAATTTCAACAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCCCAGCTAAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGCACGCTGGGAACATCCACNTGATGGGT                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD074285             [                                                                                                                                                                                                                                                                                                                     CGTC TATTGCGACCAGATTAATAAGTTTACATAGTTGCTACTGTGAGGGTATTTGTTGTATTCTATGTAGTACTTATTTCTTGTACGAGCTTGGCATAATATAGTGTCTGTGTACTCTACTTTTAATCTGTTAATTTCAACAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCCCAGCTAAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGAACGCTGGGAAAATCCAC TGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAATTTTTCATGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATTGCTCACATTTTTCTTGTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAATAAATATTGTAGAAATATAAATTGAGTAT                                                     ]
[-] EMBL CD074465             [                                                                                                                                                                                                                                                                                                                         TTA TGCGACCAGATTAATAAGTTTACATAGTTGCTACTGTGAGGGTATATGTTGTATTCTATGTAGTACTTATTTCTTGTACGAGCTTGGCATAATATAGTGTCTGTGTACTGTACTTTTAATCTGTTAATTTCAACAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCCCAGCTAAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGAACGCTGGGAAAATCCAC TGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAATTTTTCATGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATTGCTCACATTTTTCTTGTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAATAAATATTGTAGAAATATAAATTGAGTAT                                                     ]
[-] EMBL AA999312             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATTGAGTTCGACAATCGCGAACGCTGGGAAAATCCAC TGATGGGTTGGGCGAGCACCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAATTTTTCATGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATNGCTCACATTTTTCTTGTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAATAAATATTGTAGAAATATAAAT                                                            ]
[-] EMBL BF936814             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AGATCCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAATTTTTCATGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATTGCTCACATTTTTCTTGTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAATAAATATTGTAGAAATATAAATTGAGTATAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACT]


>consensus_9095#0 TCCGAGGCCAGAATTCGGCACGAGGTCAATCGGCAACGTGTCGCCGCAGATAGTCATAAC GTTTTAGCTCAGTCCAAGTAGGTACATGCATATGGATTTTGTCAAGGTCTGGGAAACAGA ATATTCTCATTCAGTATCAAAACTTGAAGTCATCGTGTCAGCTATGTTTTGGTTCTAGCG CCAGAATTTTAACTGGTTTTAAATCTGTTAGTTGAAGTTCTGACAAATCGAATTTGCTTG GATCTGTGATCTGGACATGATTGTATACACCGTTATGATCTGTAGACAAAAGCATAAAGT GACAGCATTCGTCTTATTGCGACCAGATTAATAAGTTTACATAGTTGCTACTGTGAGGGT ATTTGTTGTATTCTATGTAGTACTTATTTCTTGTACGAGCTTGGCATAATATAGTGTCTG TGTACTCTACTTTTAATCTGTTAATTTCAACAGGCGAAACATATTATGAAGAAATCAGCA AAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCGGTAAAT GGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCCCAGCTAAACCT GCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGAA CGCTGGGAAAATCCACTGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAATACAGTT GTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGT TACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAATTTTTCA TGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATTGCTCACATTTTTCTT GTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAATAAATA TTGTAGAAATATAAATTGAGTATAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCA GCTGCATTACCGTACT



consensusID : consensus_9095#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 549
fasta sequence
                              [CCTTAATTAAAGTGGGCGTTACTCGTCCTATGTTTTTAAATGTTCACCACTAAACTTCCAAGAGGATTGTCTCTTTATGAACCACTGTATCAATCCATAAGATGGAAAGTCAGTAAGGGAATACCTGCGAAAATGACTTTCGAACTTCGGAAGAAACTAGCAGAGACGGATGACCCATGGTTTCGAACCAGGCTAGTTGATTCAACTGAAGAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTCGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCACAGCTAAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGAACGCTGGGAAAATCCACTGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTANAA]

[+] EMBL CD200607             [CCTTAATTAAAGTGGGCGTTACTCGTCCTATGTTTTTAAATGTTCACCACTAAACTTCCAAGAGGATTGTCTCTTTATGAACCACTGTATCAATCCATAAGATGGAAAGTCAGTAAGGGAATACCTGCGAAAATGACTTTCGAACTTCGGAAGAAACTAGCAGAGACGGATGACCCATGGTTTCGAACCAGGCTAGTTGATTCAACTGAAGAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTCGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTA                                                                                                                                                                                                                    ]
[-] EMBL BG932284             [ cggAATTAAAGTGGGCGTTACTCGTCCTATGTTTTTAAATGTTCACCACTAAACTTCCAAGAAGATTGTCTCTTTATGAACCACTGTATCAATCCATAAGATGGAAAGTCAGTAAGGGAATACCTGCGAAAATGACTTTCGAACTTCGGAAGAAACTAGCAGAGACGGATGACCCATGGTTTCGAACCAGGCTAGTTGATTCAACTGAAGAGGCGc                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD201397             [              GGCGTTACTCGTCCTATGTTTTTAAATGTTCACCACTAAACTTCCAAGAGGATTGTCTCTTTATGAACCACTGTATCAATCCATAAGATGGAAAGTCAGTAAGGGAATACCTGCGAAAATGACTTTCGAACTTCGGAAGAAACTAGCAGAGACGGATGACCCATGGTTTCGAACCAGGCTAGTTGATTCAACTGAAGAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCACAGCTAAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGAACGCTGGGAAAATCCACTGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTANAA]


>consensus_9095#1 CCTTAATTAAAGTGGGCGTTACTCGTCCTATGTTTTTAAATGTTCACCACTAAACTTCCA AGAGGATTGTCTCTTTATGAACCACTGTATCAATCCATAAGATGGAAAGTCAGTAAGGGA ATACCTGCGAAAATGACTTTCGAACTTCGGAAGAAACTAGCAGAGACGGATGACCCATGG TTTCGAACCAGGCTAGTTGATTCAACTGAAGAGGCGAAACATATTATGAAGAAATCAGCA AAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTCGACGCCGGTAAAT GGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCACAGCTAAACCT GCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGAA CGCTGGGAAAATCCACTGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAATACAGTT GTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGT TACGTANAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9095#0      TCCGAGGCCAGAATTCGGCACGAGGTCAATCGGCAACGTGTCGCCGCAGATAGTCATAAC 60
consensus_9095#1      ------------------------------------------------------------
                                                                                  

consensus_9095#0      GTTTTAGCTCAGTCCAAGTAGGTACATGCATATGGATTTTGTCAAGGTCTGGGAAACAGA 120
consensus_9095#1      ------------------------------------------------------------
                                                                                  

consensus_9095#0      ATATTCTCATTCAGTATCAAAACTTGAAGTCATCGTGTCAGCTATGTTTTGGTTCTAGCG 180
consensus_9095#1      ------------------------------------------------------------
                                                                                  

consensus_9095#0      CCAGAATTTTAACTGGTTTTAAATCTGTTAGTTGAAGTTCTGACAAATCGAATTTGCTTG 240
consensus_9095#1      --------------------------------------------------------CCTT 4
                                                                              * * 

consensus_9095#0      GATCTGTGATCTGGACATGATTGTATACACCGTTATGATCTGTAGACAAAAGCATAAAGT 300
consensus_9095#1      AAT---TAAAGTGGGCGTTACT-CGTCCTATGTTTTTAAATGTTCACCACTAAACTTC-C 59
                       **   * *  *** * * * *   * *   *** * *  ***  ** *    *      

consensus_9095#0      GACAGCATTCGTCTTATTGCGACCAGATTAATAAGTTTACATAGTTGCTACT--GTGAGG 358
consensus_9095#1      AAGAGGATT-GTCTCTTTATGAACCACTGTATCAATCCATAAGATGGAAAGTCAGTAAGG 118
                       * ** *** ****  **  ** *   *  ** * *  * *   * *  * *  ** ***

consensus_9095#0      GTATTTGTTGTATTCTATGTAGTACTTATTTCTTGTACGAGCTTGGCATAATATAGTG-T 417
consensus_9095#1      GAATACCTGCGA----AAATGACTTTCGAACTTCGGAAGAAACTAGCAGAGACGGATGAC 174
                      * **   *   *    *  *     *      * * * **   * *** *      **  

consensus_9095#0      CTGTGTACTCTACTT---TTAATCTGTTAATTTCAACAGGCGAAACATATTATGAAGAAA 474
consensus_9095#1      CCATGGTTTCGAACCAGGCTAGTTGATTCAACTGAAGAGGCGAAACATATTATGAAGAAA 234
                      *  **   ** *       ** *   ** *  * ** ***********************

consensus_9095#0      TCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCG 534
consensus_9095#1      TCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTCGACGCCG 294
                      **************************************************** *******

consensus_9095#0      GTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCCCAGCT 594
consensus_9095#1      GTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCACAGCT 354
                      ****************************************************** *****

consensus_9095#0      AAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAAT 654
consensus_9095#1      AAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAAT 414
                      ************************************************************

consensus_9095#0      CGCGAACGCTGGGAAAATCCACTGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAAT 714
consensus_9095#1      CGCGAACGCTGGGAAAATCCACTGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAAT 474
                      ************************************************************

consensus_9095#0      ACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGG 774
consensus_9095#1      ACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGG 534
                      ************************************************************

consensus_9095#0      CCATGTTACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAAT 834
consensus_9095#1      CCATGTTACGTANAA--------------------------------------------- 549
                      ************ **                                             

consensus_9095#0      TTTTCATGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATTGCTCACATT 894
consensus_9095#1      ------------------------------------------------------------
                                                                                  

consensus_9095#0      TTTCTTGTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAA 954
consensus_9095#1      ------------------------------------------------------------
                                                                                  

consensus_9095#0      TAAATATTGTAGAAATATAAATTGAGTATAAAAAAAAAAAAAAAAAAAAAAAAAACATGC 1014
consensus_9095#1      ------------------------------------------------------------
                                                                                  

consensus_9095#0      CATGCAGCTGCATTACCGTACT 1036
consensus_9095#1      ----------------------
                                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)