These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1132 fasta sequence [TCAGACTTTATTGAATTTTTAATGAAACTGTTTTCTTTTCTTTGGTGACTTGTTGTATTACGTTGTTACTTTTCTCTCTCTTTGTACCTCTTCTTCTTTTTTGAAAATTGCTCTGTTTGTAAATGAAATCTTCACATTTATCGATTAATTTCAGAAATTATTCTTGTTTCGCATTTCTATTTATTATTATTATTATTATTATCACTACTACTGTTTTTTTACAGTTCTCTTCAGTGCAAAAGTATTTCTAATATCTTGGACAAAAGCAATTACAAAACGATGATGATGCATGTGTACTTATTGTTTCTATGTATGTATTTTGTTCGTTATTCTTTTATCTTGCAATATATATATATATATATATATATATTGATACAATATCAGTCGGTTTCGATTATCTGAGCTTCGTGAATACTGTGTTTGTGTGTTTTTTGTTCTCTCTTCTGTTATCCTGGGCTTGTTGATCGATTGAAATGATCTTATGTTGAATATTCTTCGTATGTCAGGGTTCTATAACGGTTTTGTTGATATTCATAATCAAACATTTCAGAGTTATTCCAAATATTTTTTGAAGCTAGTTACACTCAGAAACAGTAACTAATTTGTAGTTGATAATAACGTCATATGATTCAACACATCCATTTATTGTTACCGGATTTTTTGCTGATGATTAATCAGTTATAGTAAAAACACCAGTTCTCGTTAGTTTTTTAGTAATGATAGATTGGAGCACTAATCATTTTCCCATGCATTCATACATTTTGTAGTTCTAAGAAGTGCGCACTACAACTGGACTACATTTACTTATTCTCTTATCGTCTTACGCTTTCCTCCACACGTCCAGAATAATCTTTCTCTGTTGTATTTATGTGATTACTGGGGAAGTCACGACAATTATGTATTTGTACCGGTCTGCTGCTCAACTGAAATTCTTAGATATTCAGTAGTGACAATTTCTGATTGAGTTATTCCATTTCAGTTTGTTTGCCACATGAGGATATGTTTTGTTTTTCCAAATCTAGATATTCAAAGATAAATCACAAAATGTATACTATAGTTAATAATAATGTTGATTTAAATGATTTAAAACGAAAAAAAAATGAAAAGCTCCTCGTGCCGAATTTTGGCTCGA] [+] EMBL CD074229 [TCAGACTTTATTGAATTTTTAATGAAACTGTTTTCTTTTCTTTGGTGACTTGTTGTATTACGTTGTTACTTTTCTCTCTCTTTGTACCTCTTCTTCTTTTTTGAAAATTGCTCTGTTTGTAAATGAAATCTTCACATTTATCGATTAATTTCAGAAATTATTCTTGTTTCGCATTTCTATTTATTATTATTATTATTATTATCACTACTACTGTTTTTTTACAGTTCTCTTCAGTGCAAAAGTATTTCTAATATCTTGGACAAAAGCAATTACAAAACGATGATGATGCATGTGTACTTATTGTTTCTATGTATGTATTTTGTTCGTTATTCTTTTATCTTGCAATATATATATATATATATATATATATTGATACAATATCAGTCGGTTTCGATTATCTGAGCTTCGTGAATACTGTGTTTGTGTGTTTTTTGTTCTCTCTTCTGTTATCCTGGGCTTGTTGATCGATTGAAATGATCTTATGTTGAATATTCTTCGTATGTCAGGGTTCTATAACGGTTTTGTTGATATTCATAATCAAACATTTCAGAGTTATTCCAAATATTTTTTGAAGCTAGTTACACTCAGAAACAGTAACTAATTTGTAGTTGATAATAACGTCATATGATTCAACA ] [-] EMBL CD080310 [ TCAGGGTTCTATAACGGTTNTGTTGATATTCATAATCAAACATTTCAGAGTTATTCCAAATATTTTTTGAAGCTAGTTACACTCAGAAACAGTAACTAATTTGTAGTTGATAATAACGTCATATGATTCAACACATCCATTTATTGTTACCGGATTTTTTGCTGATGATTAATCAGTTATAGTAAAAACACCAGTTCTCGTTAGTTTTTTAGTAATGATAGATTGGAGCACTAATCATTTTCCCATGCATTCATACATTTTGTAGTTCTAAGAAGTGCGCACTACAACTGGACTACATTTACTTATTCTCTTATCGTCTTACGCTTTCCTCCACACGTCCAGAATAATCTTTCTCTGTTGTATTTATGTGATTACTGGGGAAGTCACGACAATTATGTATTTGTACCGGTCTGCTGCTCAACTGAAATTCTTAGATATTCAGTAGTGACAATTTCTGATTGAGTTATTCCATTTCAGTTTGTTTGCCACATGAGGATATGTTTTGTTTTTCCAAATCTAGATATTCAAAGATAAATCACAAAATGTATACTATAGTTAATAATAATGTTGATTTAAATGATTTAAAACGAAAAAAAAATGAAAAGCTCCTCGTGCCGAATTTTGGCTCGA] consensusID : consensus_9098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 798 fasta sequence [TTGGATTACGTTGTTACTTTTCTCTCTCTTTGTACCTCTTCTTCTTTTTTGAAAATTGCTCTGTTTGTAAATGAAATCTTCACATTTATCGATTAATTTCAGAAATTATTCTTGTTTCGCATTTCTATTTATTATTATTATTATTATTATCACTACTACTGGTGTTTTACAGTTCTCTTCAGTGCAAAAGTATTTCTAATATCTTGGACAAAAGCAATTACAAAACGATGATGATGCATGTGTACTTATTGTTTCTATGTATGTATTTTGTTCGTTATTCTTTTATCTTGCAATATATATATATATATATATATATATTGATACAATATCAGTCGGTTTCGATTATCTGAGCTTCGTGAATACTGTGTTTGTGTGTTTTT-CTGTGAATTTAATGTAGAATAGACAAAGAGAGAAAGAGATACACATTCGTTTATAATAATGAAATAATATTTATGATAAAAAAAAAAAGAAAAACCATACTTTAAATAATAAACAGAAGATGAAATACTTCCACTTATCTTCACTTTTTTTTCCCGATTCTTTACTTTTTATACTTTTATTTTTCACAAAATGTTTTTATTCAGTCTCTCTTATATTCATTTCTGTTTCAATTCTTTCCTTTCGGAAAACCTGATTACTTTGGAGTTATTGTTACTGTTGTGTAGGTCGGATGATATTTTTGTCTCTTTTTTTTGTACAATTGTATTTATCATCAGTAAAATATTTCATCCTTCAATTAAATGTTTATTTAATTAAACTGGGT-AATATAT-T-TTT-ATAAACCGGG-TT-AA-TA-CATAAAGC] [+] EMBL CD082724 [TTGGATTACGTTGTTACTTTTCTCTCTCTTTGTACCTCTTCTTCTTTTTTGAAAATTGCTCTGTTTGTAAATGAAATCTTCACATTTATCGATTAATTTCAGAAATTATTCTTGTTTCGCATTTCTATTTATTATTATTATTATTATTATCACTACTACTGGTGTTTTACAGTTCTCTTCAGTGCAAAAGTATTTCTAATATCTTGGACAAAAGCAATTACAAAACGATGATGATGCATGTGTACTTATTGTTTCTATGTATGTATTTTGTTCGTTATTCTTTTATCTTGCAATATATATATATATATATATATATATTGATACAATATCAGTCGGTTTCGATTATCTGAGCTTCGTGAATACTGTGTTTGTGTGTTTTT CTGTGAATTTAATGTAGAATAGACAAAGAGAGAAAGAGATACACATTCGTTTATAATAATGAAATAA ] [-] EMBL CD076315 [ TATC TGGACAAAAGCAATTACAAAACGATGATGATGCATGTGTACTTATTGTTTCTATGTATGTATTTTGTTCGTTATTCTTTTATCTTGCAATATATATATATATATATATATATATTGATCCAATATCAGTCGGTTTCGATTATCTGAGCTTCGTGAATACTGTGTTTGTGTGTTTTT CTGTGAATTTAATGTAGAATAGACAAAGAGAGAAAGAGATACACATTCGTTTATAATAATGAAATAAT ] [+] EMBL AI977791 [ gtctcgaGTTTTTACTGTGAATTTAATGTAGAATAGACAAAGAGAGAAAGAGATACACATTCGTTTATAATAATGAAATAATATTTATGATAAAAAAAAAAAGAAAAACCATACTTTAAATAATAAACAGAAGATGAAATACTTCCACTTATCTTCACTTTTTTTTCCCGATTCTTTACTTTTTATACTTTTATTTTTCACAAAATGTTTTTATTCAGTCTCTCTTATATTCATTTCTGTTTCAATTCTTTCCTTTCGGAAAACCTGATTACTTTGGAGTTATTGTTACTGTTGTGTAGGTCGGATGATATTTTTGTCTCTTTTTTTTGTACAATTGTATTTATCATCAGTAAAATATTTCATCCTTCAATTAAATGTTTATTTAATTAAACTGGGT AA ATAT TATTTAATAAACCGGGATT AATTC CATAAAGC] [+] EMBL AI618815 [ ATGAT AAAAAAAAAAGAAAAACCATACTTTAAATAATAAACAGAAGATGAAATACTTCCACTTATCTTCACTTTTTTTTCCCGATTCTTTACTTTTTATACTTTTATTTTTCACAAAATGTTTTTAATCAGTCTCTCTTATATTCATTTCTGTTTCAATTCTTTCCTTTCGGAAAACCTGATTACTTTGGAGTTATTGTTACTGTTGTGTAAGTCGGATGATATTTTTGTCTCTTTTTTTTGTACAA TGTATTTATCATC GTAAAATATTTC TCCTCCAA TAAATGTTTATTTAA TAAACTGGGT AATATAT T TTT ATAAA CGGG TT AA TA CATA ] [-] EMBL CD076314 [ ATAATAAACAGAAGATGAAATACTTCCACTTATCTTCACTTTTTTTTCCCGATTCTTTACTTTTTATACTTTTATTTTTCACAAAATGTTTTTATTCAGTCTCTCTTATATTCATTTCTGTTTCAATTCTTTCCTTTCGGAAAACCTGATTACTTTGGAGTTATTGTTACTGTTGTGTAGGTCGGATGATATTTTTGTCTCTTTTTTTTGTACAATTGTATTTATCATCAGTAAAATATTTCATCCTTCAATTAAATGTTTATTTAATTAAACTGAGTAAATATATAT TTA ATAAACCGGA TTAAA TACCATAAA ] consensusID : consensus_9098#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 135 fasta sequence [TCGAGTTTTTCTGTGAATTTAATGTAGAATAGACAAAGAGAGAAAGAGATACACACTGCGTTTATAATAATGAAACAATACGTACGATAATGAATTTTAGTAAAACTCTACTTTAGTCGTATTCAGAAGATGTAA] [+] EMBL AI977792 [TCGAGTTTTTCTGTGAATTTAATGTAGAATAGACAAAGAGAGAAAGAGATACACACTGCGTTTATAATAATGAAACAATACGTACGATAATGAATTTTAGTAAAACTCTACTTTAGTCGTATTCAGAAGATGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9098#1 ----------------------------------------------------TTGGATTA 8 consensus_9098#2 ------------------------------------------------------------ consensus_9098#0 TCAGACTTTATTGAATTTTTAATGAAACTGTTTTCTTTTCTTTGGTGACTTGTTGTATTA 60 consensus_9098#1 CGTTGTTACTTTTCTCTCTCTTTGTACCTCTTCTTCTTTTTTGAAAATTGCTCTGTTTGT 68 consensus_9098#2 ------------------------------------------------------------ consensus_9098#0 CGTTGTTACTTTTCTCTCTCTTTGTACCTCTTCTTCTTTTTTGAAAATTGCTCTGTTTGT 120 consensus_9098#1 AAATGAAATCTTCACATTTATCGATTAATTTCAGAAATTATTCTTGTTTCGCATTTCTAT 128 consensus_9098#2 ------------------------------------------------------------ consensus_9098#0 AAATGAAATCTTCACATTTATCGATTAATTTCAGAAATTATTCTTGTTTCGCATTTCTAT 180 consensus_9098#1 TTATTATTATTATTATTATTATCACTACTACTGGTGTTTTACAGTTCTCTTCAGTGCAAA 188 consensus_9098#2 ------------------------------------------------------------ consensus_9098#0 TTATTATTATTATTATTATTATCACTACTACTGTTTTTTTACAGTTCTCTTCAGTGCAAA 240 consensus_9098#1 AGTATTTCTAATATCTTGGACAAAAGCAATTACAAAACGATGATGATGCATGTGTACTTA 248 consensus_9098#2 ------------------------------------------------------------ consensus_9098#0 AGTATTTCTAATATCTTGGACAAAAGCAATTACAAAACGATGATGATGCATGTGTACTTA 300 consensus_9098#1 TTGTTTCTATGTATGTATTTTGTTCGTTATTCTTTTATCTTGCAATATATATATATATAT 308 consensus_9098#2 ------------------------------------------------------------ consensus_9098#0 TTGTTTCTATGTATGTATTTTGTTCGTTATTCTTTTATCTTGCAATATATATATATATAT 360 consensus_9098#1 ATATATATATTGATACAATATCAGTCGGTTTCGATTATCTGAGCTTCGTGAATACTGTGT 368 consensus_9098#2 ------------------------------------------------------------ consensus_9098#0 ATATATATATTGATACAATATCAGTCGGTTTCGATTATCTGAGCTTCGTGAATACTGTGT 420 consensus_9098#1 TTGTGTGTTTTT-----------CTGTGAATTTAA---TGTAGAATAGACAAAGAGAGAA 414 consensus_9098#2 --TCGAGTTTTT-----------CTGTGAATTTAA---TGTAGAATAGACAAAGAGAGAA 44 consensus_9098#0 TTGTGTGTTTTTTGTTCTCTCTTCTGTTATCCTGGGCTTGTTGATCGATTGAAATGATCT 480 * ****** **** * * *** ** ** ** consensus_9098#1 AGAGATACACATT---CGTTTATAATAATGAAATAATATTTATGATAAAAAAAAAAAGAA 471 consensus_9098#2 AGAGATACACACTG--CGTTTATAATAATGAAACAATACGTACGATAATGAATTTTAGTA 102 consensus_9098#0 TATGTTGAATATTCTTCGTATGTCAGGGTTCTATAACGGTTTTGTTGAT-ATTCATAATC 539 * * * * * *** * * * * * ** * * * * * * consensus_9098#1 AAACCATACTTTAAATAATAAACAGAAGATGAAATACTTCCACTTATCTTCACTTTTTTT 531 consensus_9098#2 AAACTCTACTTTAG-TCGTATTCAGAAGATGTAA-------------------------- 135 consensus_9098#0 AAAC---ATTTCAG-AGTTATTCCAAATATTTTTTGAAGCTAGTTACACTCAGAAACAGT 595 **** * ** * ** * ** ** consensus_9098#1 TCCCGATTCTTTACTTTTTATACTTTTATTTTTCACAAAATGTTTTTATTCAGTCTCTCT 591 consensus_9098#2 ------------------------------------------------------------ consensus_9098#0 AACTAATTTGTAGTTGATAATAACGTCATATGATTCAACACATCCATTTATTGTTACCGG 655 consensus_9098#1 TATATTCATTTCTGTTTCAATTCTTTCCTTTCGGAAAACCTGATTACTTTGGAGTTATTG 651 consensus_9098#2 ------------------------------------------------------------ consensus_9098#0 ATTTTTTGCTGATGATT-AATCAGTTATAGTAAAAACACCAGTTCTCGTTAGTTTTTTAG 714 consensus_9098#1 TTACTGTTGTGTAGGTCGGATGATATTTTTGTCTCTTTTTTTTGTACAATTGTATTTATC 711 consensus_9098#2 ------------------------------------------------------------ consensus_9098#0 TAATGATAGATTGGAGCACTAATCATTTTCCCATGCATTCATACATTTTGTAGTTCTAAG 774 consensus_9098#1 ATCAGTAAAATATTTCATCCTTCAATTAAATGTTTATTTAATTAAACTGGGTAATATATT 771 consensus_9098#2 ------------------------------------------------------------ consensus_9098#0 AAGTGCGCACTACAACTGGACTACATTTACTTATTCTCTTATCGTCTTACGCTTTCCTCC 834 consensus_9098#1 TTTATAAACCGGGTTAATACATAAAGC--------------------------------- 798 consensus_9098#2 ------------------------------------------------------------ consensus_9098#0 ACACGTCCAGAATAATCTTTCTCTGTTGTATTTATGTGATTACTGGGGAAGTCACGACAA 894 consensus_9098#1 ------------------------------------------------------------ consensus_9098#2 ------------------------------------------------------------ consensus_9098#0 TTATGTATTTGTACCGGTCTGCTGCTCAACTGAAATTCTTAGATATTCAGTAGTGACAAT 954 consensus_9098#1 ------------------------------------------------------------ consensus_9098#2 ------------------------------------------------------------ consensus_9098#0 TTCTGATTGAGTTATTCCATTTCAGTTTGTTTGCCACATGAGGATATGTTTTGTTTTTCC 1014 consensus_9098#1 ------------------------------------------------------------ consensus_9098#2 ------------------------------------------------------------ consensus_9098#0 AAATCTAGATATTCAAAGATAAATCACAAAATGTATACTATAGTTAATAATAATGTTGAT 1074 consensus_9098#1 ---------------------------------------------------------- consensus_9098#2 ---------------------------------------------------------- consensus_9098#0 TTAAATGATTTAAAACGAAAAAAAAATGAAAAGCTCCTCGTGCCGAATTTTGGCTCGA 1132 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||