These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9103#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1211 fasta sequence [ACTCTTAAAGGATACTTCTGATTGGCAACGTTCAACCGGTCCCGAATTAGATGGGTCTTCTAATTATTTTACTGATTTGCCTGTATTAGTCATGACACCTATCAATGAAATGATTGGTAAAGGTAATTTATTACATTATCTGGGAAATGCTGTAAGAGAACAATTTTTTACTCAA-TGTGTTGAAGAGATGGCGCTTTTCGTGAAAGATTACGATGATGATATTAAAAAGTACCGAGCAGCCTACATACAAGACAGATCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAATGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGATGAATTGGCTGAAGATTCACATCTTAAAGGGAACCTGACAGCTAGGATTAGTCATTTGAAATCAGAATATGAAAAAGTAGCTGAACAATGGATAGCTTA-TGCTGAAGAAACAGTATTCATGGATTTA-AATCGTGTACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCTGGTTGGTACATTAGCCGATTATGACGAAACACTGAAGCATACAAGACAAAATTTTTATGATAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAGCCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACGAGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAATTGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACGGATACTAGAGTTCCCCTCTGCTGATGTATACATCAGAACCNNNNNNCCCCGGATGTCTCAGAAAAANAAATCTCACATAAGTTTGGTCGAGGATAAAAGGAGCNNNNNNNNNNNNNNNANCNAGCTCGGCTACGAGATGCAACTACGTCATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTACANNNNATTTNTGTAGAAAGGAACCCATTTTTTTCTCCTTTTGGGCCAAAAGGGGGTCCAAATTTTTCTTTTCCGGAAGGGGTTTCAAAACCGGGTTTTTAAAATTTTAAAGGGAACCCCCTGTCACTTCCAACTTTGTGTTTTTTGTTTTCGCCCGGGAACCCCCTTTATTTAAACCGGGGGAAAAACAAAGG] [-] EMBL CD189669 [ACTCTTAAAGGATACTTCTGATTGGCAACGTTCAACCGGTCCCGAATTAGATGGGTCTTCTAATTATTTTACTGATTTGCCTGTATTAGTCATGACACCTATCAATGAAATGATTGGTAAAGGTAATTTATTACATTATCTGGGAAATGCTGTAAGAGAACAATTTTTTACTCAA TGTGTTGAAGAGATGGCGCTTTTCGTGAAAGATTACGATGATGATATTAAAAAGTACCGAGCAGCCTACATACAAGACAGATCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAATGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGATGAATTGGCTGAAGATTCACATCTTAAAGGGA ] [+] EMBL CD157701 [ tagTTGTACTCAAGTG GGAGAAGAGATGGCGCTTTTCGTGAAAGATTACGATGATGATATTAAAAAGTACCGAGCAGCCTACATACAAGACAGATCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAATGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGATGAATTGGCTGAAGATTCACATCTTAAAGGGGACCTGACAGCTAGGATTAGTCATTTGAAATCAG ATATGANAAAGTAGCTGAA ] [+] EMBL CD092289 [ nGCCTTCATACAAGACAGATCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAATGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGACGAATTGGCTGAAGATTCACATCTTAAAGGGAACCTGACAGCTAGGATTAGTCATTTGAAATCAGAATATGAAAAAGTAGCTGAACAATGGATAGCTTA TGCTGAAGAAACAGTATTCATGGATTTA AATCGTGTACTGAGCGTGATTATGACACCTCAATGGCTAC ] [+] EMBL CD092387 [ TCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAATGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGACGAATTGGCTGAAGATTCACATCTTAAAGGGAACCTGACAGCTAGGATTAGTCATTTGAAATCAGAATATGAAAAAGTAGCTGAACAATGGATAGCTTA TGCTGAAGAAACAGTATTCATGGATTTA AATCGTGTACTGAGCGTGATTATGACACCTCAATGGCTAC ] [+] EMBL CD083143 [ gcacgaGGA ACCTTANTGCTGAAGAAACAGTATTCATGGATTTATAATCGTGTACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCTGGTTGGTACATTAGCCGATTATGACGAAACACTGAAGCATACAAGACAAAATTTTTATGATAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAGCCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACGAGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAATTGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACGGATACTAGAGTTCCCCTCTGCTGATGTATACATCAGAACCNNNNNNCCCCGGATGTCTCAGAAAAANAAATCTCACATAAGTTTGGTCGAGGATAAAAGGAGCNNNNNNNNNNNNNNNANCNAGCTCGGCTACGAGATGCAACTACGTCATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTACANNNNATTTNTGTAGAAAGGAACCCATTTTTTTCTCCTTTTGGGCCAAAAGGGGGTCCAAATTTTTCTTTTCCGGAAGGGGTTTCAAAACCGGGTTTTTAAAATTTTAAAGGGAACCCCCTGTCACTTCCAACTTTGTGTTTTTTGTTTTCGCCCGGGAACCCCCTTTATTTAAACCGGGGGAAAAACAAAGG] consensusID : consensus_9103#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 795 fasta sequence [GATAGCTTATGCTGAAGAAACAGTATTCATGGATTTAAATCGTGTACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCTGGTTGGTACATTAGCCGATTATGACGAAACACTGAAG-CATACAAGACAAAATTTATATGATAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAGCCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACGAGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAATTGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACTGATACATCAATGTTACCCTTGGATATTGCTAATTTGAAACGTCAATTTCCTGATGTTCGTTCTGATCAAGTTTATGCGTTGCTTGTGGCTCGTGGAGATGTTTCATCAGACAATGCTAAAGGACTTTCGGCGGACTCTCATTACGGGAGGGAATTGTCACAGAAGCCATCACCGTTCGCAATTTTCACACGATTAGTCGTTGCAATGGACACGCATTAGTGTTCACCTTTTGGCCGAAAAAGGGATGCAAAATTTATCAATTTCGCGACTGGTTTTTTCAATCCTGATTTTTTTAAATCTTTACGATGTAATCACCTTGTTACTTTCCACATTCTGTTTATTTGTCTTATGCTTCGGATAAACCCCTATATTAAATCACGTATGTAATACTAACAACGGTA] [+] EMBL CD079766 [GATAGCTTATGCTGAAGAAACAGTATTCATGGATTTAAATCGTGTACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCTGGTTGGTACATTAGCCGATTATGACGAAACACTGAAG CATACAAGACAAAATTTATATGATAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAGCCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACGAGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAATTGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACTGATACATCAATGTTACCCTTGGATATTGCTAATTTGAAACGTCAATTTCCTGATGTTCGTTCTGATCAAGTTTATGCGTTGCTTGTGGCTCGTGGAGATGTTTCATCAGACAATGCTAAAGGACTTTCGGCGGACTCTCATTACGGGAGGGAATTGTCACAGAAGCCATCACCGTTCGCAATTTTCACACGATTAGTCGTTGCAATGGACACGCATTAGTGTTCACCTTTTGGCCGAAAAGGGGATGCANAATTTATCAATTTC ] [-] EMBL CD074026 [ GAAGCCAT CAAGACAAAATTTATATGATAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAGCCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACGAGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAATTGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACTGATACATCAATGTTACCCTTGGATATTGCTAATTTGAAACGTCAATTTCCTGATGTTCGTTCTGATCAAGTTTATGCGTTGCTTGTGGCTCGTGGAGATGTTTCATCAGACAATGCTAAAGGACTTTCGGCGGACTCTCATTACGGGAGGGAATTGTCACAGAAGCCATCACCGTTCGCAATTTTCACACGATTAGTCGTTGCAATGGACACGCATTAGTGTTCACCTTTTGGCCGAAAAAGGGATGCAAAATTTATCAATTTCGCGACTGGTTTTTTCAATCCTGATTTTTTTAAATCTTTACGATGTAATCACCTTGTTACTTTCCACATTCTGTTTATTTGTCTTATGCTTCGGATAAACCCCTATATTAAATCACGTATGTAATACTAACAACGGTA] [-] EMBL CD076714 [ AAGTAATTGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACTGATACATCAATGTTACCCTTGGATATTGCTAATTTGAAACGTCAATTTCCTGATGTTCGTTCTGATCAAGTTTATGCGTTGCTTGTGGCTCGTGGAGATGTTTCATCAGACAATGTTAAAGGACTTTCGGCGGACTCTCATTACGGGAGGGAATTGTCACAGAAGCCATCCCCGTTCGCAATTTTCACACGATTAGTCGTTGCAATGGACACGCATTAGTGTTCCCCTTTTGGCCGAAAAAGGGATGCAAAATTTATCAATTTCGCGACTGGTTTTTTCAATCCTGATTTTTTTAAATCTTTATAATGTAATCCCCTTGTTACTTTCCACATTCTGTTTATTTGTCTTATGCTTCGGATAAACCCCTATATTAAATCACGTATGTAATACTAACAACGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9103#0 ACTCTTAAAGGATACTTCTGATTGGCAACGTTCAACCGGTCCCGAATTAGATGGGTCTTC 60 consensus_9103#1 ------------------------------------------------------------ consensus_9103#0 TAATTATTTTACTGATTTGCCTGTATTAGTCATGACACCTATCAATGAAATGATTGGTAA 120 consensus_9103#1 ------------------------------------------------------------ consensus_9103#0 AGGTAATTTATTACATTATCTGGGAAATGCTGTAAGAGAACAATTTTTTACTCAATGTGT 180 consensus_9103#1 ------------------------------------------------------------ consensus_9103#0 TGAAGAGATGGCGCTTTTCGTGAAAGATTACGATGATGATATTAAAAAGTACCGAGCAGC 240 consensus_9103#1 ------------------------------------------------------------ consensus_9103#0 CTACATACAAGACAGATCGAAATTCCCATGCTATATAGAATACATTTTAGCCAATGCAAA 300 consensus_9103#1 ------------------------------------------------------------ consensus_9103#0 TGGTGCATGTATGATTGCGCACAGTTTTGTCACAGTAATAATGGATGAATTGGCTGAAGA 360 consensus_9103#1 ------------------------------------------------------------ consensus_9103#0 TTCACATCTTAAAGGGAACCTGACAGCTAGGATTAGTCATTTGAAATCAGAATATGAAAA 420 consensus_9103#1 ------------------------------------------------------------ consensus_9103#0 AGTAGCTGAACAATGGATAGCTTATGCTGAAGAAACAGTATTCATGGATTTAAATCGTGT 480 consensus_9103#1 ---------------GATAGCTTATGCTGAAGAAACAGTATTCATGGATTTAAATCGTGT 45 ********************************************* consensus_9103#0 ACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCT 540 consensus_9103#1 ACTGAGCGTGATTATGACACCTCAATGGCTACGCCCGGATGATATGACAACACAATATCT 105 ************************************************************ consensus_9103#0 GGTTGGTACATTAGCCGATTATGACGAAACACTGAAGCATACAAGACAAAATTTTTATGA 600 consensus_9103#1 GGTTGGTACATTAGCCGATTATGACGAAACACTGAAGCATACAAGACAAAATTTATATGA 165 ****************************************************** ***** consensus_9103#0 TAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAG 660 consensus_9103#1 TAAATTAGCTGAAAAATTGGCTGAACGAATGTTAATTGAATACTTGAAAGCATTAATAAG 225 ************************************************************ consensus_9103#0 CCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACG 720 consensus_9103#1 CCGACGAAGTCCACTTTCTACAGAAGCTGATAGAAAAAAAGCTGGTGAAAAAATTACACG 285 ************************************************************ consensus_9103#0 AGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAAT 780 consensus_9103#1 AGATGGACATGATTTGAAAAATTATTTTGAAGAGAAAATGAGAGTGAAAAGTGAAGTAAT 345 ************************************************************ consensus_9103#0 TGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACGGATAC--TAGA 838 consensus_9103#1 TGTGGCCTACGACGCTTTAACAACTATCGGTCAGTTGTTCCTTACAACTGATACATCAAT 405 ************************************************ ***** * consensus_9103#0 GTTCCCCTCTGCTGATGTATACATCAGAACCNNNNNNCCCCGGATGTCTCAGAAAAANAA 898 consensus_9103#1 GTTACCCTTGGATATTGC-TA-ATTTGAAACGTCAATTTCCTGATGT-TCGTTCTGATCA 462 *** **** * * ** ** ** *** * ** ***** ** * * consensus_9103#0 ATCTCACATAAGTTTGGTCGAGGATAAAAGGAGCNNNNNNNNNNNNNNNANCNAGCTCGG 958 consensus_9103#1 AGTTTATGCGTTGCTTGTGGCTCGTGGAGATGTTTCATCAGACAATGCTAAAGGACTTT- 521 * * * * ** * * * * ** consensus_9103#0 CTACGAGATGCAACTACGTCATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAC 1018 consensus_9103#1 CGGCGGACTCTCATTACGGGAGGGAATTGTCACAGAAGCCATCACCGTTCGCAATTTT-C 580 * ** * * **** * **** * consensus_9103#0 ANNNNATTTNT-GTAGAAAGGAACCCATTTTT---TTCTCCTTTTGGGCCAAAAGGGGGT 1074 consensus_9103#1 ACACGATTAGTCGTTGCAATGGACACGCATTAGTGTTCACCTTTTGGCCGAAAAAGGGAT 640 * *** * ** * ** * ** * ** *** ******** * **** *** * consensus_9103#0 CCAAATTTT-TCTTTTCCGGAAGGGGTTT---CAAAACCGGGTTTTTAAAATTTTAAAGG 1130 consensus_9103#1 GCAAAATTTATCAATTTCGCGACTGGTTTTTTCAATCCTGATTTTTTTAAATCTTTACGA 700 **** *** ** ** ** * ***** *** * * ***** **** ** * * consensus_9103#0 ---GAACCCCCTGTCACTTCCAACTTTGTGTTT-TTTGTTTT---CGCCCGGGAACCCCC 1183 consensus_9103#1 TGTAATCACCTTGTTACTTTCCACATTCTGTTTATTTGTCTTATGCTTCGGATAAACCCC 760 * * ** *** **** * ** ** ***** ***** ** * * * ** **** consensus_9103#0 TTTATTTAAAC-CGGGGGAAAAACAAAGG------ 1211 consensus_9103#1 TATATTAAATCACGTATGTAATACTAACAACGGTA 795 * **** ** * ** * ** ** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||