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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9113#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 746 fasta sequence
[TTCGGCACGAGGTGATTTGTTGCATGGTGTTCTGATTGACTGGGATGTCGTCGCAATCTGAAGATGACTCACATGACGAGTTGCCATTCGATATCGATGAAGTAATGGCTGCCAAACGTAATAATCCTGGTATGTTTGTGAGTGCTTGGCAGGCAGATGAAAATGATATTAATCTGTGGACAAATGATCAAATAAAAGATGATCCAAAGAAACAATTTATTGTCGCAGCAGAAAACAATGATCTATCTACTATCCGTAGCCTTATTGAGTCAGCTAAGCAGAAAGGTGCTGATGGAGAGGTGGAGTTAAGAGAATTATTGTCAGCTAAAGATCAAGATGGTTATACAGCATTGCATCGTGCGGCGTATGGAGGACACGTAGAAGTTTTACAGTATCTAATGAAATACGGAGCAAATATAAACAATAGGACGGAAGATGGATGGACACCATTACACAGTGCCGCATTCTGGAATAAATTATCTTGTGTCCAATTACTTATTTCAGCGGGTGCAGATTTAAATGCTCTTACAAACAGTGGACAAACCGCCTTACATTTAGCTGTTTCAAACAACCAAGGACCTGAGACATTATATTTATTGATCGCTCAACCTGGTGCACCAGTTTATGGCGTACGCAATAAGTTAGGCGATGAAGTAGCTGATATTGTCAAAAGAAATACACCTTATGGAGATATTTGTTACGCATTCAGTGAACCAGCAACTAATTTGTG-AAAATATAAATGATTC]
[+] EMBL CD077624 [TTCGGCACGAGGTGATTTGTTGCATGGTGTTCTGATTGACTGGGATGTCGTCGCAATCTGAAGATGACTCACATGACGAGTTGCCATTCGATATCGATGAAGTAATGGCTGCCAAACGTAATAATCCTGGTATGTTTGTGAGTGCTTGGCAGGCAGATGAAAATGATATTAATCTGTGGACAAATGATCAAATAAAAGATGATCCAAAGAAACAATTTATTGTCGCAGCAGAAAACAATGATCTATCTACTATCCGTAGCCTTATTGAGTCAGCTAAGCAGAAAG ]
[+] EMBL CD079685 [ TGATTTGTTGCATGGTGTTCTGATTGACTGGGATGTCGTCGCAATCTGAAGATGACTCACATGACGAGTTGCCATTCGATATCGATGAAGTAATGGCTGCCAAACGTAATAATCCTGGTATGTTTGTGAGTGCTTGGCAGGCAGATGAAAATGATATTAATCTGTGGACAAATGATCAAATAAAAGATGATCCAAAGAAACAATTTATTGTCGCAGCAGAAAACAATGATCTATCTACTATCCGTAGCCTTATTGAGTCAGCTAAGCAGAAAGGTGCTGATGGAGAGGTGGAGTTAAGAGAATTATTGTCAGCTAAAGATCAAGATGGTTATACAGCATTGCATCGTGCGGCGTATGGAGGACACGTAGAAGTTTTACAGTATCTAATGAAATACGGAGCAAATATAAACAATAGGACGGAAGATGGATGGACACCATTACACAGTGCCGCATTCTGGAATAAATTATCTTGTGTCCAATTACTTATTTCAGCGGGTGCAGATTTAAATGCTCTTACAAACAGTGGACAAACCGCCTTACATTTAGCTGTTTCAAACAACCAAGGACCTGAGACATTATATTTATTGATCGCTCAACCTGGTGCACCAGTTTATGGCGTACGCAATAAGTTAGGCGATGAAGTAGCTGATATTGTCAAAAGAAATACACCTTATGGAGATATTTGTTACGCATTCAGTGAACCAGCAACTAATTTGTG AAAATATAAATGATT ]
[-] EMBL CD073945 [ GATGACTCACATGACGAGTTGCCATTCGATATCGATGAAGTAATGGCTGCCAAACGTAATAATCCTGGTATGTTTGTGAGTGCTTGGCAGGCAGATGAAAATGATATTAATCTGTGGACAAATGATCAAATAAAAGATGATCCAAAGAAACAATTTATTGTCGCAGCAGAAAACAATGATCTATCTACTATCCGTAGCCTTATTGAGTCAGCTAAGCAGAAAGGTGCTGATGGAGAGGTGGAGTTAAGAGAATTATTGTCAGCTAAAGATCAAGATGGTTATACAGCATTGCATCGTGCGGCGTATGGAGGACACGTAGAAGTTTTACAGTATCTAATGAAATACGGAGCAAATATAAACAATAGGACGGAAGATGGATGGACACCATTACACAGTGCCGCATTCTGGAATAAATTATCTTGTGTCCAATTACTTATTTCAGCGGGTGCAGATTTAAATGCTCTTACAAACAGTGGACAAACCGCCTTACATTTAGCTGTTTCAAACAACCAAGGACCTGAGACATTATATTTATTGATCGCTCAACCTGGTGCACCAGTTTATGGCGTACGCAATAAGTTAGGCGATGAAGTAGCTGATATTGTCAAAAGAAATACACCTTATGGAGATATTTGTTACGCATTCAGTGAACCAGCAACTAATTTGTGAAAAATATAAATGATTC]
[-] EMBL CD098123 [ TGTGGACAAATGATCAAATAAAAGATGATCCAAAGAAACAATTTATTGTCGCAGCAGAAAACAATGATCTATCTACTATCCGTAGCCTTATTGAGTCAGCTAAGCAGAAAGGTGCTGATGGAGAGGTGGAGTTAAGAGAATTATTGTCAGCTAAAGATCAAGATGGTTATACAGCATTGCATCGTGCGGCGTATGGAGGACACGTAGAAGTTTTACAGTATCTAATGAAATACGGAGCAAATATAAACAATAGGACGGAAGATGGATGGACACCATTACACAGTGCCGCATTCTGGAATAAATTATCTTGTGTCCAATTACTTATTTCAGCTGGTGCAGATTTAAATGCTCTTACAAACAGTGGACAAACCGCCTTACATTTAGCTGTTTCAAACAACCAAGGACCTGAGACATAATATTTATTGATCGCTCAACCTGGTGCACCAGTTTA ]
consensusID : consensus_9113#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 675 fasta sequence
[TCGGCACGAGGTTCGATATCGATGAAGTAATGGCTGCCAAACGTAATAATCCTGGTATGTTTGTGAGTGCTTGGCAGGCAGATGAAAATGATATTAATCTGTGGACAAATGATCAAATAAAAGTTTAGATGATCCAAAGAAACAATTTATTGTCGCAGCAGAAAACAATGATCTATCTACTATCCGTAGCCTTATTGAGTCAGCTAAGCAGAAAGGTGCTGATGGAGAGGTGGAGTTAAGAGAATTATTGTCAGCTAAAGATCAAGATGGTTATACAGCATTGCATCGTGCGGCGTATGGAGGACACGTAGAAGTTTTACAGTATCTAATGAAATACGGAGCAAATATAAACAATAGGACGGAAGATGGATGGACACCATTACACAGTGCCGCATTCTGGAATAAATTATCTTGTGTCCAATTACTTATTTCAGCGGGTGCAGATTTAAATGCTCTTACAAACAGTGGACAAACCGCCTTACATTTAGCTGTTTCAAACAACCAAGGACCTGAGACATTATATTTATTGATCGCTCAACCTGGTGCACCAGTTTATGGCGTACGCAATAAGTTAGGCGATGAAGTAGCTGATATTGTCAAAAGAAATACACCTTATGGAGATATTTGTTACGCATTCAGTGAACCAGCAACTAATTTGTG-AAAATATGAATGATT]
[+] EMBL CD080684 [TCGGCACGAGGTTCGATATCGATGAAGTAATGGCTGCCAAACGTAATAATCCTGGTATGTTTGTGAGTGCTTGGCAGGCAGATGAAAATGATATTAATCTGTGGACAAATGATCAAATAAAAGTTTAGATGATCCAAAGAAACAATTTATTGTCGCAGCAGAAAACAATGATCTATCTACTATCCGTAGCCTTATTGAGTCAGCTAAGCAGAAAGGTGCTGATGGAGAGGTGGAGTTAAGAGAATTATTGTCAGCTAAAGATCAAGATGGTTATACAGCATTGCATCGTGCGGCGTATGGAGGACACGTAGAAGTTTTACAGTATCTAATGAAATACGGAGCAAATATAAACAATAGGACGGAAGATGGATGGACACCATTACACAGTGCCGCATTCTGGAATAAATTATCTTGTGTCCAATTACTTATTTCAGCGGGTGCAGATTTAAATGCTCTTACAAACAGTGGACAAACCGCCTTACATTTAGCTGTTTCAAACAACCAAGGACCTGAGACATTATATTTATTGATCGCTCAACCTGGTGCACCAGTTTATGGCGTACGCAATAAGTTAGGCGATGAAGTAGCTGATATTGTCAAAAGAAATACACCTTATGGAGATATTTGTTACGCATTCAGTGAACCAGCAACTAATTTGTG AAAATATGAATGAT ]
[-] EMBL CD074608 [ GTAATGGCTGCCAAACGTAATAATCCTGGTATGTTTGTGAGTGCTTGGCAGGCAGATGAAAATGATATTAATCTGTGGACAAATGATCAAATAAAAGTTTAGATGATCCAAAGAAACAATTTATTGTCGCAGCAGAAAACAATGATCTATCTACTATCCGTAGCCTTATTGAGTCAGCTAAGCAGAAAGGTGCTGATGGAGAGGTGGAGTTAAGAGAATTATTGTCAGCTAAAGATCAAGATGGTTATACAGCATTGCATCGTGCGGCGTATGGAGGACACGTAGAAGTTTTACAGTATTTAATGAAATACGGAGCAAATATAAACAATAGGACGGAAGATGGATGGACACCATTACACAGTGCCGCATTTTGGAATAAATTATCTTGTGTCCAATTACTTATTTCAGCGGGTGCAGATTTAAATGCTCTTACAAACAGTGGACAAACCGCCTTACATTTAGCTGTTTCAAACAACCAAGGACCTGAGACATTATATTTATTGATCGCTCAACCTGGTGCACCAGTTTATGGCGTACGCAATAAGTTAGGCGATGAAGTAGCTGATATTGTCAAAAGAAATACACCTTATGGAGATATTTGTTACGCATTCAGTGAACCAGCAACGAATTTGTGAAAAATATAAATGATT]
consensusID : consensus_9113#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 487 fasta sequence
[AAACCACATAAGTGTTCTGATTGACTGGGATGTCGTCGCAATCTGAAGATGACTCACATGACGAGTTGCCATTCGATATCGATGAAGTAATGGCTGCCAAACGTAATAATCCTGGTATGTTTGTGAGTGCTTGGCAGGCAGATGAAAATGATATTAATCTGTGGACAAATGATCAAATAAAAGATGATCCAAAGAAACAATTTATTGTCGCAGCAGAAAACAATGATCTATCTACTATCCGTAGCCTTATTGAGTCAGCTAAGCAGAAAGGTGCTGATGGAGAGGTGGAGTTAAGAGAATTATTGTCAGCTAAAGATCAAGATGGTTATACAGCATTGCATCGTGCGGCGTTTGGAGGACACGTAGAAGTTTTACAGTATCTAATGAAATACGGAGCAAATATAAACAATAGGACGGAAGATGGATGGACACCATTACACAGTGCCGCATTCTGGAATAAATTATCTTGTGTCCAATTACTTATTTC]
[+] EMBL CD097826 [AAACCACATAAGTGTTCTGATTGACTGGGATGTCGTCGCAATCTGAAGATGACTCACATGACGAGTTGCCATTCGATATCGATGAAGTAATGGCTGCCAAACGTAATAATCCTGGTATGTTTGTGAGTGCTTGGCAGGCAGATGAAAATGATATTAATCTGTGGACAAATGATCAAATAAAAGATGATCCAAAGAAACAATTTATTGTCGCAGCAGAAAACAATGATCTATCTACTATCCGTAGCCTTATTGAGTCAGCTAAGCAGAAAGGTGCTGATGGAGAGGTGGAGTTAAGAGAATTATTGTCAGCTAAAGATCAAGATGGTTATACAGCATTGCATCGTGCGGCGTTTGGAGGACACGTAGAAGTTTTACAGTATCTAATGAAATACGGAGCAAATATAAACAATAGGACGGAAGATGGATGGACACCATTACACAGTGCCGCATTCTGGAATAAATTATCTTGTGTCCAATTACTTATTTC]
[+] EMBL CD098026 [AAACCACATAAGTGTTCTGATTGACTGGGATGTCGTCGCAATCTGAAGATGACTCACATGACGAGTTGCCATTCGATATCGATGAAGTAATGGCTGCCAAACGTAATAATCCTGGTATGTTCGTGAGTGCTTGGCAGGCAGATGAAAATGATATTAATCTGTGGACAAATGATCAAATAAAAGATGATCCAAAGAAACAATTTATTGTCGCAGCAGAAAACAATGATCTATCTACTATCCGTAGCCTTATTGAGTCAGCTAAGCAGAAAGGTGCTGATGGAGAGGTGGAGTTAAGAGAATTATTGTCAGCTAAAGATCAAGATGGTTATACAGCATTGCATCGTGCGGCGTATGGAGGACACGTAGAAGTTTTACAGTATCTAATGAAATACGGAGCAAATATAAACAATAGGACGGAAGATGGATGGACACCATTACAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9113#0 TTCGGCACGAGGTGATTTGTTGCATG-GTGTTCTGATTGACTGGGATGTCGTCGCAATCT 59
consensus_9113#2 ----------------AAACCACATAAGTGTTCTGATTGACTGGGATGTCGTCGCAATCT 44
consensus_9113#1 ------------------------------------------------------------
consensus_9113#0 GAAGATGACTCACATGACGAGTTGCCATTCGATATCGATGAAGTAATGGCTGCCAAACGT 119
consensus_9113#2 GAAGATGACTCACATGACGAGTTGCCATTCGATATCGATGAAGTAATGGCTGCCAAACGT 104
consensus_9113#1 ----------------TCGGCACGAGGTTCGATATCGATGAAGTAATGGCTGCCAAACGT 44
** * *********************************
consensus_9113#0 AATAATCCTGGTATGTTTGTGAGTGCTTGGCAGGCAGATGAAAATGATATTAATCTGTGG 179
consensus_9113#2 AATAATCCTGGTATGTTTGTGAGTGCTTGGCAGGCAGATGAAAATGATATTAATCTGTGG 164
consensus_9113#1 AATAATCCTGGTATGTTTGTGAGTGCTTGGCAGGCAGATGAAAATGATATTAATCTGTGG 104
************************************************************
consensus_9113#0 ACAAATGATCAAATAAAAG-----ATGATCCAAAGAAACAATTTATTGTCGCAGCAGAAA 234
consensus_9113#2 ACAAATGATCAAATAAAAG-----ATGATCCAAAGAAACAATTTATTGTCGCAGCAGAAA 219
consensus_9113#1 ACAAATGATCAAATAAAAGTTTAGATGATCCAAAGAAACAATTTATTGTCGCAGCAGAAA 164
******************* ************************************
consensus_9113#0 ACAATGATCTATCTACTATCCGTAGCCTTATTGAGTCAGCTAAGCAGAAAGGTGCTGATG 294
consensus_9113#2 ACAATGATCTATCTACTATCCGTAGCCTTATTGAGTCAGCTAAGCAGAAAGGTGCTGATG 279
consensus_9113#1 ACAATGATCTATCTACTATCCGTAGCCTTATTGAGTCAGCTAAGCAGAAAGGTGCTGATG 224
************************************************************
consensus_9113#0 GAGAGGTGGAGTTAAGAGAATTATTGTCAGCTAAAGATCAAGATGGTTATACAGCATTGC 354
consensus_9113#2 GAGAGGTGGAGTTAAGAGAATTATTGTCAGCTAAAGATCAAGATGGTTATACAGCATTGC 339
consensus_9113#1 GAGAGGTGGAGTTAAGAGAATTATTGTCAGCTAAAGATCAAGATGGTTATACAGCATTGC 284
************************************************************
consensus_9113#0 ATCGTGCGGCGTATGGAGGACACGTAGAAGTTTTACAGTATCTAATGAAATACGGAGCAA 414
consensus_9113#2 ATCGTGCGGCGTTTGGAGGACACGTAGAAGTTTTACAGTATCTAATGAAATACGGAGCAA 399
consensus_9113#1 ATCGTGCGGCGTATGGAGGACACGTAGAAGTTTTACAGTATCTAATGAAATACGGAGCAA 344
************ ***********************************************
consensus_9113#0 ATATAAACAATAGGACGGAAGATGGATGGACACCATTACACAGTGCCGCATTCTGGAATA 474
consensus_9113#2 ATATAAACAATAGGACGGAAGATGGATGGACACCATTACACAGTGCCGCATTCTGGAATA 459
consensus_9113#1 ATATAAACAATAGGACGGAAGATGGATGGACACCATTACACAGTGCCGCATTCTGGAATA 404
************************************************************
consensus_9113#0 AATTATCTTGTGTCCAATTACTTATTTCAGCGGGTGCAGATTTAAATGCTCTTACAAACA 534
consensus_9113#2 AATTATCTTGTGTCCAATTACTTATTTC-------------------------------- 487
consensus_9113#1 AATTATCTTGTGTCCAATTACTTATTTCAGCGGGTGCAGATTTAAATGCTCTTACAAACA 464
****************************
consensus_9113#0 GTGGACAAACCGCCTTACATTTAGCTGTTTCAAACAACCAAGGACCTGAGACATTATATT 594
consensus_9113#2 ------------------------------------------------------------
consensus_9113#1 GTGGACAAACCGCCTTACATTTAGCTGTTTCAAACAACCAAGGACCTGAGACATTATATT 524
consensus_9113#0 TATTGATCGCTCAACCTGGTGCACCAGTTTATGGCGTACGCAATAAGTTAGGCGATGAAG 654
consensus_9113#2 ------------------------------------------------------------
consensus_9113#1 TATTGATCGCTCAACCTGGTGCACCAGTTTATGGCGTACGCAATAAGTTAGGCGATGAAG 584
consensus_9113#0 TAGCTGATATTGTCAAAAGAAATACACCTTATGGAGATATTTGTTACGCATTCAGTGAAC 714
consensus_9113#2 ------------------------------------------------------------
consensus_9113#1 TAGCTGATATTGTCAAAAGAAATACACCTTATGGAGATATTTGTTACGCATTCAGTGAAC 644
consensus_9113#0 CAGCAACTAATTTGTGAAAATATAAATGATTC 746
consensus_9113#2 --------------------------------
consensus_9113#1 CAGCAACTAATTTGTGAAAATATGAATGATT- 675
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||