These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1012 fasta sequence [GGCCAGTATNTCGGCACGAGCGCTGGCCTTGAGGATGACGTTATATTCAATCATTCTGCCCACCTACAATGAGAAAGAAAATCTCCCGATTATTACATGGATCATTGATAAGGTTATGAATAAAAGTGGCTTTCCCTACGAACTAATAATCGTTGACGACAACAGTCCAGATGGCACAGGTGAAGTTGCTAAAAAGTTACAATCTATTTTTGGAGAAAACAAAATAATTCTCAAACCCAGAAGTGGAAAATTAGGACTAGGCTCAGCTTACTTGCATGGTTTGAAGTTTGCAAAAGGTGATTTCATTATCATTATGGACGCGGATTTA-TCGCACCATCCAAAGTTTATTCCTGAGTTCATTAAATTACAAAAGCAACATGATTACGATGTTGTTACTGGGACGCGATATGCATCTAACGGAGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGCTCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAAAGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGAAATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGTAGATCGATTTTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGGATTATTACATCTTTTCTGTACTTGTTAATTTTCTTCTTTGTTTTTTTGGAAAAAAATAAACATAGTTAATTATA-ATTCTATTGTTCGAACTCG-GTTTATATAATAAAACATTTTTTAAGGCTT-CATTGCAAATCTA-TGCTAAATACTTTTGTATATAGCTAATGAATTTACCCAAAGTTCAAATTCATTCACAATGAATATTATAATAGTCATCTTAAGACGTAGAAGATATAATTTTCAATTTACGTCAATATATAAATTCTTGGTAAATGTAATAAAAAAAAAAAAAAAA] [+] EMBL CD081570 [GGCCAGTATNTCGGCACGAGCGCTGGCCTTGAGGATGACGTTATATTCAATCATTCTGCCCACCTACAATGAGAAAGAAAATCTCCCGATTATTACATGGATCATTGATAAGGTTATGAATAAAAGTGGCTTTCCCTACGAACTAATAATCGTTGACGACAACAGTCCAGATGGCACAGGTGAAGTTGCTAAAAAGTTACAATCTATTTTTGGAGAAAACAAAATAATTCTCAAACCCAGAAGTGGAAAATTAGGACTAGGCTCAGCTTACTTGCATGGTTTGAAGTTTGCAAAAGGTGATTTCATTATCATTATGGACGCGGATTTA TCGCACCATCCAAAGTTTATTCCTGAGTTCATTAAATTACAAAAGCAACATGATTACGATGTTGTTACTGGGACGCGATATGCATCTAACGGAGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGCTCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAAAGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGAAATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGTAGATCGATTTTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGGATTATTACATCTTTTCTGTACTTGTTAATTNTCTTCTTTGTTTTTTTGGAAAAAAATAAACATAGTTAATTATA ATTCTATTGTTCGAACTCG GTTTATATAAT AAACATTNTTTAAGGCTT CATTGCAAATCTA TGCTAAATACTTTTGTATATAGCTAATGAA TTACCC AAGTTCAAA TCATTCAC ATG ATATTAT ATAGTCATCTT AGACGTAGAAGA ATAATTTTC ATTTACGTC ATATAT AATCCTTGG ] [+] EMBL AF283817 [ TATATTCAATCATTCTGCCCACCTACAATGAGAAAGAAAATCTCCCGATTATTACATGGATCATTGATAAGGTTATGAATAAAAGTGGCTTTCCCTACGAACTAATAATCGTTGACGACAACAGTCCAGATGGCACAGGTGAAGTTGCTAAAAAGTTACAATCTATTTTGGGAGAAAACAAAATAATTCTCAAACCCAGAAGTGGAAAATTAGGACTAGGCTCAGCTTACTTGCATGGTTTGAAGTTTGCAAAAGGTGATTTCATTATCATTATGGACGCGGATTTA TCGCACCATCCAAAGTTTATTCCTGAGTTCATTAAATTACAAAAGCAACATGATTACGATGTTGTTACTGGGACGCGATATGCATCTAACGGAGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGCTCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAAAGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGAAATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGTAGATCGATTTTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGGATTATTACATCTTTTCTGTACTTGTTAATTTTCTTCTTTGTTTTTTTGG AAAAAATAAACATAGTTAATTATA ATTCTATTGTTCGAACTCG GTTTATATAATAAAACATTTTTTAAGGCTT CATTGCAAATCTA GGCTAAATACTTTTGTATATAGCTAATGAATTTACCCAAAGTTCAAATTCATTCACAATGAATATTATAATAGTCATCTTAAGACGTAGAAGATATAATTTTCAATTTACGTCAATATATAAATTCTTGGTAAATGTAATAAAAAAAAAAAAAAAA] [-] EMBL CD073863 [ TTANTCGCACCATCCAAAGTTTATTCCTGAGTTCATTAAATTACAAAAGCAACATGATTACGATGTTGTTACTGGGACGCGATATGCATCTAACGGAGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGCTCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAAAGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGAAATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGTAGATCGATTTTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGGATTATTACATCTTTTCTGTACTTGTTAATTTTCTTCTTTGTTTTTTTGGAAAAAAATAAACATAGTTAATTATA ATTCTATTGTTCGAACTCG GTTTATATAATAAAACATTTTTTAAGGCTT CATTGCAAATCTA TGCTAAATACTTTTGTATATAGCTAATGAATTTACCCAAAGTTCAAATTCATTCACAATGAATATTATAATAGTCATCTTAAGACGTAGAAGATATAAGTTTCAATTTACGTCAAAAAATAAATTCTTGGT ] [-] EMBL CD076998 [ CGATGTTGTTACTGGGACGCGATATGCATCTAACGGAGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGCTCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAAAGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGAAATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGTAGATCGATTTTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGGATTATTACATCTTTTCTGTACTTGTTAATTTTCTTCTTTGTTTTTTTGGAAAAAAATAAACATAGTTAATTATA ATTCTATTGTTCGAACTCGCGTTTATATAATAAAACATTTTTTAAGGCTTCCATTGCAAATCTAGTGCTAAATACTTTTGTATATAGCTAATGAATTTACCCAAAGTTCAAATTCATTCACAATGAATATTATAATAGTCATCTTAAGACGTAGAAGATATAATTTTCAATTTACCGCAATATATAA ] [-] EMBL CD075396 [ GCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAAAGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGAAATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGTAGATCGATTTTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGGATTATTACATCTTTTCTGGACTTGTTAATTTTCTTCTTTGTTTTTTTGGAAAAAAATAAACATAGTTAATTATA ATTCTATTGTTCGAACTCG GTTTATATAATAAAACATTTTTTAAGGCTT CATTGCAAATCTA TGCTAAATACTTTTGTATATAGCTAATGAATTTACCCAAAGTTCAAATTCATTCCCAATGAATATTATAATAGTCATCTTAAGACGTAGAAGATATAATTTTCAATTTACGTCAATATATAAATTCTTGGT ] [-] EMBL CD073874 [ CTTCTTTGATTATTTGGAAAAAAATAAACATAGTTAATTATAGATTCTATTGTTCGAACACG GTTTATATAATATAACATTTTTTAAGGCTT CATTGCAAATCTA TGCTAAATACTTTTGTATATAGCTAATGAATTTACCCAAAGTTCAAATTCATTCTCAATGAATATTATAATAGTCATCTTAAGACGTAGAAGATATAATTTTCTATTTACGTCAAAATATAAATTCTTG ] consensusID : consensus_9117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence [CAANAATTTTGCACTGAGGCCCACCTACAATGAGAAAGAAAATCTCCCGATTATTACATGGATCATTGATAAGGTTATGAATAAAAGTGGCTTTCCCTACGAACTAATAATCGTTGACGACAACAGTCCAGATGGCACAGGTGAAGTTGCTAAAAAGTTACAATCTATTTTTGGAGAAAACAAAATAATTCTCAAACCCAGAAGTGGAAAATTAGGACTAGGCTCAGCTTACTTGCATGGTTTGAAGTTTGCAAAAGGTGATTTCATTATCATTATGGACGCGGATTTATCGCACCATCCAAAGTTTATTCCTGAGTTCATTAAATTACAAAAGCAACATGATTACGATGTTGTTACTGGGACGCGATATGCATCTAACGGAGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGCTCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAAAGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGAAATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGTAGATCGATTNTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGGATTATTACATC] [+] EMBL CD079600 [CAANAATTTTGCACTGAGGCCCACCTACAATGAGAAAGAAAATCTCCCGATTATTACATGGATCATTGATAAGGTTATGAATAAAAGTGGCTTTCCCTACGAACTAATAATCGTTGACGACAACAGTCCAGATGGCACAGGTGAAGTTGCTAAAAAGTTACAATCTATTTTTGGAGAAAACAAAATAATTCTCAAACCCAGAAGTGGAAAATTAGGACTAGGCTCAGCTTACTTGCATGGTTTGAAGTTTGCAAAAGGTGATTTCATTATCATTATGGACGCGGATTTATCGCACCATCCAAAGTTTATTCCTGAGTTCATTAAATTACAAAAGCAACATGATTACGATGTTGTTACTGGGACGCGATATGCATCTAACGGAGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGCTCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAAAGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGAAATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGTAGATCGATTNTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGGATTATTACATC] [-] EMBL CD155897 [ AGTTTATTCCTGAGTTCATTAAATTTCAAAAGCAACATGATTACGATGTTGTTACTGGGACGCGATATGCATCTAACGGAGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGCTCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAAAGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGAAATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9117#0 GGCCAGTATNTCGGCACGAGCGCTGGCCTTGAGGATGACGTTATATTCAATCATTCTGCC 60 consensus_9117#1 --------------------------------CAANAATTTTGCACTGAG-------GCC 21 * * ** * * * *** consensus_9117#0 CACCTACAATGAGAAAGAAAATCTCCCGATTATTACATGGATCATTGATAAGGTTATGAA 120 consensus_9117#1 CACCTACAATGAGAAAGAAAATCTCCCGATTATTACATGGATCATTGATAAGGTTATGAA 81 ************************************************************ consensus_9117#0 TAAAAGTGGCTTTCCCTACGAACTAATAATCGTTGACGACAACAGTCCAGATGGCACAGG 180 consensus_9117#1 TAAAAGTGGCTTTCCCTACGAACTAATAATCGTTGACGACAACAGTCCAGATGGCACAGG 141 ************************************************************ consensus_9117#0 TGAAGTTGCTAAAAAGTTACAATCTATTTTTGGAGAAAACAAAATAATTCTCAAACCCAG 240 consensus_9117#1 TGAAGTTGCTAAAAAGTTACAATCTATTTTTGGAGAAAACAAAATAATTCTCAAACCCAG 201 ************************************************************ consensus_9117#0 AAGTGGAAAATTAGGACTAGGCTCAGCTTACTTGCATGGTTTGAAGTTTGCAAAAGGTGA 300 consensus_9117#1 AAGTGGAAAATTAGGACTAGGCTCAGCTTACTTGCATGGTTTGAAGTTTGCAAAAGGTGA 261 ************************************************************ consensus_9117#0 TTTCATTATCATTATGGACGCGGATTTATCGCACCATCCAAAGTTTATTCCTGAGTTCAT 360 consensus_9117#1 TTTCATTATCATTATGGACGCGGATTTATCGCACCATCCAAAGTTTATTCCTGAGTTCAT 321 ************************************************************ consensus_9117#0 TAAATTACAAAAGCAACATGATTACGATGTTGTTACTGGGACGCGATATGCATCTAACGG 420 consensus_9117#1 TAAATTACAAAAGCAACATGATTACGATGTTGTTACTGGGACGCGATATGCATCTAACGG 381 ************************************************************ consensus_9117#0 AGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGC 480 consensus_9117#1 AGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGC 441 ************************************************************ consensus_9117#0 TCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAA 540 consensus_9117#1 TCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAA 501 ************************************************************ consensus_9117#0 AGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGA 600 consensus_9117#1 AGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGA 561 ************************************************************ consensus_9117#0 AATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGT 660 consensus_9117#1 AATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGT 621 ************************************************************ consensus_9117#0 AGATCGATTTTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGG 720 consensus_9117#1 AGATCGATTNTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGG 681 ********* ************************************************** consensus_9117#0 ATTATTACATCTTTTCTGTACTTGTTAATTTTCTTCTTTGTTTTTTTGGAAAAAAATAAA 780 consensus_9117#1 ATTATTACATC------------------------------------------------- 692 *********** consensus_9117#0 CATAGTTAATTATAATTCTATTGTTCGAACTCGGTTTATATAATAAAACATTTTTTAAGG 840 consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 CTTCATTGCAAATCTATGCTAAATACTTTTGTATATAGCTAATGAATTTACCCAAAGTTC 900 consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 AAATTCATTCACAATGAATATTATAATAGTCATCTTAAGACGTAGAAGATATAATTTTCA 960 consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 ATTTACGTCAATATATAAATTCTTGGTAAATGTAATAAAAAAAAAAAAAAAA 1012 consensus_9117#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||