These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9132#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 621 fasta sequence [ATTGGCCCTCAGGCCAGAATCGGCACGAGGTTTACTTTTAACCGTGTGTTTTCGCTCATATGTCGAAGTCCCAAAAACCACACTTTGTGTTCTCACAAAGTTTTGTAT-ATAGAGTTTTGGTTGCTAGAAATCTTTCTCAAAAAGCCGAGGCTATTGGTTCTGAAGGCACAATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTATCATCACGTACGACGAGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAA-TTTTTTCAGAAATACGGTGTATCTAAGCCGAAAACGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCAGCAAGTGCCTGTGAAATAGCTCACAGTCTGGGGT-TTAAAAGGGCGAAATATTATTTGAAAGGATGGACGGAGTGGTCTACAATGCGTAATAAGTAAACAGTAACAAATTTAATGCATCTGTATTTGATGGTGTACATAATCTACAATAAACTTAAAAACAGTTTGAGCCAAA] [+] EMBL CD083524 [ATTGGCCCTCAGGCCAGAATCGGCACGAGGTTTACTTTTAACCGTGTGTTTTCGCTCATATGTCGAAGTCCCAAAAACCACACTTTGTGTTCTCACAAAGTTTTGTAT ATAGAGTTTTGGTTGCTAGAAATCTTTCTCAAAAAGCCGAGGCTATTGGTTCTGAAGGCACAATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTATCATCACGTACGACGAGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAA TTTTTTCAGAAATACGGTGTATCTNAGCCGAAAACGAGCGACAGCAACGTAATATTTT ] [+] EMBL CD083605 [ tcGCACGAGGTTTACTTTTAACCGTGTGTTTTCGCTCATATGTCGAAGTCCCAAAAACCACACTTTGTGTTCTCACAAAGTTTTGTATAATAGAGTTTTGGTTGCTAGAAATCTTTCTCAAAAAGCCGAGGCTATTGGTTCTGAAGGCACAATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTATCATCACGTACGACGAGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAA TTTTTTCAGAAATACGGTGTATCTAAGCCGAAAACGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCAGCAAGTGCCTGTGAAATAGCTCACAGTCTGGGGT TTAAAAGGGCGAAATATTATTTGAAAGGATGGACGGAGTGGTCTACAATGCGTAATAAGTAAACCGTCACAAATTTAATGCATCTGTAT ] [+] EMBL CD138588 [ TTTCTCAAAAAGCCGAGGCTATTGGTTCTGAAGGCACAATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTATCATCACGTACGACGAGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAA TTTTTTCAGAAATACGGTGTATCTAAGCCGAAAACGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCAGCAAGTGCCTGTGAAATAGCTCACAGTCTGGGGT TTAAAAGGGCGAAATATTATTTGAAAGGATGGACGGAGTGGTCTACAATGCGTAATAAGTAAACAGTAACAAATTTAATGCATCTGTATTTGATGGTGTACATAATCTACAATAAACTTAAAAACAGTTTGAGCCAAA] [-] EMBL CD093450 [ ACGATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTATCATCACGTACGACGAGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAA TTTTTTCAGAAATACGGTGTATCTAAGCCGAATACGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCAGCAAGTGCCTGTGAAATAGCTCACAGTCTGGGGT TTAAAAGGGCGAAATATTATTTGAAAGGATGGACGGAGTGGTCTACAATGCGTAATAAGTACACAGTAACAAATTTAATGCATCTGTATTTGATGGTGTACATAATCTACAATAAACTTAA ] [+] EMBL CD138562 [ AATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTATCATCACGTACGACGAGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAA TTTTTTCAGAAATACGGTGTATCTAAGCCGAAAACGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCAGCAAGTGCCTGAGAAATAGCTCACAGTCTGGGGT TTAAAAGGGCGAAATATTATTTGAAAGGATGGACGGAGTGGTCTACAATGCGTAATAAGTAAACAGTAACAAATTTAATGCATCTGTATTTGATGGGGTACATAATCTACAATAAACTTA ] [-] EMBL CD093396 [ ATCACGTACGACGAGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAATTTTTTTCAGAAATACGGTGTATCTAAGCCGAAAACGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCAGCAAGTGCCTGTGAAATAGCTCACAGTCTGGGGTCTTAAAAGGGCGAAATATTATTTGAAAGGATGGACGGAGTGGTCTACAATGCGTAATAAGTAAACAGCAACAAATTTAATGCATCTGTATTTGATGGTGTACATAATCTACAATAAACTTAA ] [-] EMBL CD093446 [ TTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTCCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAA TGTTTTCAGAGATACGGTGTATCTAAGCCGAAGACGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCAGCAAGTGCCTGTGAAATAGCTCACAGTCTGGGGT TTAAAAGGGCGAAATATTATTTGAAAGGATGGACGGAGTGGTCTACAATGCGTAATAAGTAAACAGTAACAAATTTAATGCATCTGTATTTGATGGTGTACATAATCTACAATAAACTTAA ] consensusID : consensus_9132#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [CGTTTTTCACAATAATGTCATTAGTCCGTCTTACTTCATGTCCAGCTTTTACTTTTAACCGTGTGTTTTCGCTCATATGTCGAAGTCCCAAAAACCACACTTTGTGTTCTCACAAAGTTTTGTATAATAGAGTTTTGGTTGCTAGAAATCTTTCTCAAAAAGCCGAGGCTATTGGTTCTGAAGGCACAATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTAACATCACGTACGACGAGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAATTTTTTCAGAAATACGGTGTATCTAAGCCGAAAACGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCA] [-] EMBL CD136674 [CGTTTTTCACAATAATGTCATTAGTCCGTCTTACTTCATGTCCAGCTTTTACTTTTAACCGTGTGTTTTCGCTCATATGTCGAAGTCCCAAAAACCACACTTTGTGTTCTCACAAAGTTTTGTATAATAGAGTTTTGGTTGCTAGAAATCTTTCTCAAAAAGCCGAGGCTATTGGTTCTGAAGGCACAATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTAACATCACGTACGACGAGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAATTTTTTCAGAAATACGGTGTATCTAAGCCGAAAACGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9132#0 ----------------ATTGGCCCTCAGGCCAGAATCG-GCACGAGGTTTACTTTTAACC 43 consensus_9132#1 CGTTTTTCACAATAATGTCATTAGTCCGTCTTACTTCATGTCCAGCTTTTACTTTTAACC 60 * ** * * ** * * ************* consensus_9132#0 GTGTGTTTTCGCTCATATGTCGAAGTCCCAAAAACCACACTTTGTGTTCTCACAAAGTTT 103 consensus_9132#1 GTGTGTTTTCGCTCATATGTCGAAGTCCCAAAAACCACACTTTGTGTTCTCACAAAGTTT 120 ************************************************************ consensus_9132#0 TGTATA-TAGAGTTTTGGTTGCTAGAAATCTTTCTCAAAAAGCCGAGGCTATTGGTTCTG 162 consensus_9132#1 TGTATAATAGAGTTTTGGTTGCTAGAAATCTTTCTCAAAAAGCCGAGGCTATTGGTTCTG 180 ****** ***************************************************** consensus_9132#0 AAGGCACAATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTATCATCACGTACGACG 222 consensus_9132#1 AAGGCACAATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTAACATCACGTACGACG 240 ********************************************* ************** consensus_9132#0 AGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACG 282 consensus_9132#1 AGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACG 300 ************************************************************ consensus_9132#0 ATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGA 342 consensus_9132#1 ATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGA 360 ************************************************************ consensus_9132#0 AATCACTCATTCTCAGTGACAGCGAATTTTTTCAGAAATACGGTGTATCTAAGCCGAAAA 402 consensus_9132#1 AATCACTCATTCTCAGTGACAGCGAATTTTTTCAGAAATACGGTGTATCTAAGCCGAAAA 420 ************************************************************ consensus_9132#0 CGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCAGCAAGTGCCTGTG 462 consensus_9132#1 CGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCA------------- 467 *********************************************** consensus_9132#0 AAATAGCTCACAGTCTGGGGTTTAAAAGGGCGAAATATTATTTGAAAGGATGGACGGAGT 522 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 GGTCTACAATGCGTAATAAGTAAACAGTAACAAATTTAATGCATCTGTATTTGATGGTGT 582 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 ACATAATCTACAATAAACTTAAAAACAGTTTGAGCCAAA 621 consensus_9132#1 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||