These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 689 fasta sequence [CTCCAGGCCAANAATTCGGCACGAGGTATCTAATCTCCTTTTACCATTGGTTACTTTCATTGGAAGTATTTCAATTTTATTATGGATTACTTATATTATACAAAATCATGATTGGAGTTTTTTAACATCAGTTTATTGGAATACTATCACTATAACTGATTGTACACCTCAAATGGGTATCTTTTGGTATATGTTTGTTGAAATGTTTGATCATTTCAGTGAATTTTTCACATGGGTTTTTCAACTACTTATTTTCACTATAGTACTTGGCTTGACAATTAAATTTAATCGTAATCCGTTATATATATGCCTTGTAATATCATTTATTATCAATGTATTACAACCATATCATAATATTGGAGAACTTGGCCTCTTAATATCTATTCTACCAATGTGGAGTCATCTTTTAAAACAAACCCGAATGTTATTTATTTCGTCGTGTTGTTTGTTGACTGCATTGATTCTTAGTCCATTATTTCATTACATCTGGTTGCAACCGGGTACAGGAAATGCGAATTTCTATTTCGCTGCATCATTGGTGCATGCGTTTGGACAGGTTATCCTTATTACAGATTTATTAAATGCTTATGGAAAATATGAATTTTTTTTACATCATGGTTCCAATCTTCAATTGAGTACTGGTGAAAAATTAAAATTAATTCAAGAATAAAAAAAAATATTTTTTTTCC] [+] EMBL CD079433 [CTCCAGGCCAANAATTCGGCACGAGGTATCTAATCTCCTTTTACCATTGGTTACTTTCATTGGAAGTATTTCAATTTTATTATGGATTACTTATATTATACAAAATCATGATTGGAGTTTTTTAACATCAGTTTATTGGAATACTATCACTATAACTGATTGTACACCTCAAATGGGTATCTTTTGGTATATGTTTGTTGAAATGTTTGATCATTTCAGTGAATTTTTCACATGGGTTTTTCAACTACTTATTTTCACTATAGTACTTGGCTTGACAATTAAATTTAATCGTAATCCGTTATATATATGCCTTGCAATATCATTTATTATCAATGTATTACAACCATATCATAATATTGGAGAACTTGGCCTCTTAATATCTATTCTACCAATGTGGAGTCATCTTTTAAAACAAACCCGAATGTTATTTATTTCGTCGAGTTGTTTGTTGACTGCATTGATTCTTAGTCCATTATTTCATTACATCTGGTTGCAACCGGGTACAGGAAATGCGAATTTCTATTTCGCTGCATCATTGGTGCATGCGTTTGGACAGGTTATCCTTATTACAGATTTATTAAATGCTTATGGAAAATATGAATTTTTTTTACATCATGGTTCCAATCTTCAATTGAGTACTGGTGAAAAATTAAAATTAATTCAAGAATAAAAAAAAATATTTTTTTTCC] [+] EMBL SMAA25616 [ AATTTAATCGTAATCCGTTATATATATGCCTTGTAATATCATTTATTATCAATGTATTACAACCATATCATAATATTGGAGAACTTGGCCTCTTAATATCTATTCTACCAATGTGGAGTCATCTTTT AAACAAACCCGAATGTTATTTATTTCGTCGTGTTGTTTGTTGACTGCATTGATTCTTAGTCCATTATTTCATTACATCTGGTTGCAACCGGGTACAGGAAATGCGAATTTCTATTTCGCTGCATCATTGGTGCATGCGTTTGGACAGGTTAT CTTATTACAGATTTATTAAATGCTTATGG AAATATGAATTTTTTTTACATCATGGTTCCAATCTTCAATTGAGTACTGGTG AAAATTAAAATTAATTCAACGAT AAAAAAAATAT ] [+] EMBL SMAA25555 [ AATTTAATCGTAATCCGTTATATATATGCCTTGTAATATCATTTATTATCAATGTATTACAACCATATCATAATATTGGAGAACTTGGCCTCTTAATATCTATTCTACCAATGTGGAGTCATCTTTTAAAACAAACCCGAATGTTATTTATTTCGTCGTGTTGTTTGTTGACTGCATTGATTCTTAGTCCATTATTTCATTACATCTGGTTGCAACCGGGTACAGGAAA ] [-] EMBL CD073705 [ TCATCTTTTAAAACAAACCCGAATGTTATTTATTTCGTCGTGTTGTTTGTTGACTGCATTGATTCTTAGTCCATTATTTCATTACATCTGGTTGCAACCGGGTACAGGAAATGCGAATTTCTATTTCGCTGCATCATTGGTGCATGCGTTTGGACAGGTTATCCTTATTACAGATTTATTAAATGCTTATGGAAAATATGAATTTTTTTTACATCATGGTTCCAATTTTCAATTGAGTACTGGTGAAAAATTAAAATTAATTCAAGAATAAAAAAAAATAT ] [-] EMBL CD146031 [ AATGCGAATTTCTATTTCGCTGCATCATTGGTGCATGCGTTTGGACAGGTTATCCTTATTACAGATTTATTAAATGCTTATGGAAAATATGAATTTTTTTTACATCATGGTTCCAATC ] consensusID : consensus_9136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence [CTCGAGGCCAAAAATTCGGCACGAGGCCTTTTACCATTGGTTACTTTCATTGGAAGTATTTCAATTTTATTATGGATTAATTATATTATACAAAATCATGATTGGAGTTTTTTAACATCACTTTATTGGAATACTATCACTATAGACTGATTGAACACCTCATATGGGTATCTTTTGGTATATCGTCT] [+] EMBL CD080054 [CTCGAGGCCAAAAATTCGGCACGAGGCCTTTTACCATTGGTTACTTTCATTGGAAGTATTTCAATTTTATTATGGATTAATTATATTATACAAAATCATGATTGGAGTTTTTTAACATCACTTTATTGGAATACTATCACTATAGACTGATTGAACACCTCATATGGGTATCTTTTGGTATATCGTCT] consensusID : consensus_9136#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 116 fasta sequence [ATTTCAGTGAATTTTTCACATGGGTTTTTCAACTACTTATTCACTATAGTAGTTGGATTGACAATTAAATTTAATTCGTAACCGTATATATATTGCCTTGTAAATCATTTATATCA] [+] EMBL AA931029 [ATTTCAGTGAATTTTTCACATGGGTTTTTCAACTACTTATTCACTATAGTAGTTGGATTGACAATTAAATTTAATTCGTAACCGTATATATATTGCCTTGTAAATCATTTATATCA] consensusID : consensus_9136#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 115 fasta sequence [TTAATTTTGGACCAGTACTCAATTCTAGNTTGGGACCCRTGGTTGTAAAAAAAATTTCATATTTTCCATAAGCATTTAATAAATCTGTAATAAGGGATAACCTGTCCAAACGGAA] [+] EMBL SMAA25554 [TTAATTTTGGACCAGTACTCAATTCTAGNTTGGGACCCRTGGTTGTAAAAAAAATTTCATATTTTCCATAAGCATTTAATAAATCTGTAATAAGGGATAACCTGTCCAAACGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9136#0 CTCCAGGCCAANAATTCGGCACGAGGTATCTAATCTCCTTTTACCATTGGTTACTTTCAT 60 consensus_9136#2 ------------------------------------------------------------ consensus_9136#1 ------------------------------------------------------------ consensus_9136#3 ------------------------------------------------------------ consensus_9136#0 TGGAAGTATTTCAATTTTATTATGGATTACTTATATTATACAAAATCATGATTGGAGTTT 120 consensus_9136#2 ------------------------------------------------------------ consensus_9136#1 ------------------------------------------------------------ consensus_9136#3 ------------------------------------------------------------ consensus_9136#0 TTTAACATCAGTTTATTGGAATACTATCACTATAACTGATTGTACACCTCAAATGGGTAT 180 consensus_9136#2 ------------------------------------------------------------ consensus_9136#1 ------------------------------------------------------------ consensus_9136#3 ------------------------------------------------------------ consensus_9136#0 CTTTTGGTATATGTTTGTTGAAATGTTTGATCATTTCAGTGAATTTTTCACATGGGTTTT 240 consensus_9136#2 --------------------------------ATTTCAGTGAATTTTTCACATGGGTTTT 28 consensus_9136#1 -----------------------------CTCGAGGCCAAAAATTCGGCACGAGGCCTTT 31 consensus_9136#3 ---------------------------------------------------TTAATTTTG 9 ** consensus_9136#0 T-CAACTACTTATTTTCACTATAG------TACTTGGCTTGACAATTAAATTTAAT-CGT 292 consensus_9136#2 T-CAACTACTTATT--CACTATAG------TAGTTGGATTGACAATTAAATTTAATTCGT 79 consensus_9136#1 TACCATTGGTTACTTTCATTGGAAGTATTTCAATTTTATTATGGATTAATTATATTATAC 91 consensus_9136#3 GACCAGTACTCAATTCTAGNTTGGGACCCRTGGTTGTAAAAAAAATTTCATATTTTCCAT 69 * * * * * * * ** *** * * * consensus_9136#0 AATCCGTTA-TATATATGCCTTGTAATATCA-TTTATTATCAATGTATTACAACCATATC 350 consensus_9136#2 AACCGTATA-TATAT-TGCCTTGTAA-ATCA-TTTAT-ATCA------------------ 116 consensus_9136#1 AAAATCATG-ATTGG-AGTTTTTTAACATCACTTTATTGGAATACTATCACTATAGACTG 149 consensus_9136#3 AAGCATTTAATAAATCTGTAATAAGGGATAA-CCTGTCCAAACGGAA------------- 115 ** * * * ** * * * * consensus_9136#0 ATAATATTGGAGAACTTGGCCTCTTAATATCTATTCTACCAATGTGGAGTCATCTTTTAA 410 consensus_9136#2 ------------------------------------------------------------ consensus_9136#1 ATTGAACACCTCATATGGGTATCTTTTGGTATATCGTCT--------------------- 188 consensus_9136#3 ------------------------------------------------------------ consensus_9136#0 AACAAACCCGAATGTTATTTATTTCGTCGTGTTGTTTGTTGACTGCATTGATTCTTAGTC 470 consensus_9136#2 ------------------------------------------------------------ consensus_9136#1 ------------------------------------------------------------ consensus_9136#3 ------------------------------------------------------------ consensus_9136#0 CATTATTTCATTACATCTGGTTGCAACCGGGTACAGGAAATGCGAATTTCTATTTCGCTG 530 consensus_9136#2 ------------------------------------------------------------ consensus_9136#1 ------------------------------------------------------------ consensus_9136#3 ------------------------------------------------------------ consensus_9136#0 CATCATTGGTGCATGCGTTTGGACAGGTTATCCTTATTACAGATTTATTAAATGCTTATG 590 consensus_9136#2 ------------------------------------------------------------ consensus_9136#1 ------------------------------------------------------------ consensus_9136#3 ------------------------------------------------------------ consensus_9136#0 GAAAATATGAATTTTTTTTACATCATGGTTCCAATCTTCAATTGAGTACTGGTGAAAAAT 650 consensus_9136#2 ------------------------------------------------------------ consensus_9136#1 ------------------------------------------------------------ consensus_9136#3 ------------------------------------------------------------ consensus_9136#0 TAAAATTAATTCAAGAATAAAAAAAAATATTTTTTTTCC 689 consensus_9136#2 --------------------------------------- consensus_9136#1 --------------------------------------- consensus_9136#3 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||