These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9151#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 458 fasta sequence [AGTAAATAAAAAGCACGTTCGCAGTGTCGAATTCCAAGTTGTGAGCAAGGATGACTAGACGTATGTCTCAGGGAATTTTTGTTGTTCTCGAAGGAGCAGATCGGGTAG-GAAAAACAACACAAGCATCACTCCTAGCTAAAGCTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATATATTCTGGGATCGCTTACACAGCTGCTAAAGCTCCACCAACGCCAAACTGGGAATGGTGTTGGGAAATGGAAAAAGGCCTTGTAGAACCGGATTTGGTGATA] [+] EMBL CD133323 [AGTAAATAAAAAGCACGTTCGCAGTGTCGAATTCCAAGTTGTGAGCAAGGATGACTAGACGTATGTCTCAGGGAATTTTTGTTGTTCTCGAAGGAGCAGATCGGGTAG GAAAAACAACACAAGCATCACTCCTAGCTAAAGCTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATATATTCTGGGATCGCTTACACAGCTGCTAAAGCTCCACCAACGCCAAACTGGGAATGGTGTTGGGAAATGGAAAAAGGCCTTGTAGAACCGGATTTGGTGAT ] [+] EMBL CD189722 [ AAAGAGCACGTTCGCAGTGTCGAATTCCAAGTTGTGAGCAAGGATGACTAGACGTATGTCTCAGGGAATTTTTGTTGTTCTCGAAGGAGCAGATCGGGTAGNGAAAAACAACACAAGCATCACTCCTAGCTAAAGCTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATA ] [-] EMBL CD132993 [ AAAAGCACGTTCGCAGTGTCGAATTCCAAGTTGTGAGCAAGGATGACTAGACGTATGTCTCAGGGAATTTTTGTTGTTCTCGAAGGAGCAGATCGGGTAG GAAAAACAACACAAGCATCACTCCTAGCTAAAGCTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTCCAAATGGAATACCTGTTGTAGCAGACAGATATATATATTCTGGGATCGCTTACACAGCTGCTAAAGCTCCACCAACGCCAAACTGGGAATGGTGTTGGGAAATGGAAAAAGGCCTTGTAGAACCGGATTTGGTGATA] [-] EMBL CD133279 [ AAAAGCACGTTCGCAGTGTCGAATTCCAAGTTGTGAGCAAGGATGACTAGACGTATGTCTCAGGGAATTTTTGTTGTTCTCGAAGGAGCAGATCGGGTAG GAAAAACAACACAAGCATCACTCCTAGCTAAAGCTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTTAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATATATTTTGGGATCGCTTACACAGGTGGTAAAGCTCCACCCACGCCAAACTGGGAATGGTGTTGGGAAAT ] [-] EMBL CD133235 [ AAAAGCACGTTCGCAGTGTCGAATTCCAAGTTGTGAGCAAGGATGACTAGACGTATGTCTCAGGGAATTTTTGTTG TCTCGAAGGAGCAGATCGGGTAG GAAAAACAACACAAGCATCTCTCCTAGGTAAAGCTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCT ] [+] EMBL CD142035 [ ACACAAGCATCACTCCTAGCTAAAGCTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATATATTCTGGGATCGCTTACACAGCTGCTAAAGCTCCACCAACGCCAAACTGGGAATGGTGTTGGGAAA ] consensusID : consensus_9151#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [TATTGTTTGTTAAAAATCAGCATTTGTCCTCTGCTTCATTTAATTCGATAGCTGATCAAATATTCTAGTAAATTAGACGGTTCACTATCACGAAATTCGTATACTATTACTACATATTTTAGACCTTTCATCTCAGGCTGTATATTTCATATTACGGTCTGATACCATCATTACTAATGTGATCTATTAGGATTCCAGCCAATATGCTTATTTATATCATGAAATTCTGGTCTTTTCCAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATATATTCTGGGATCGCTTACACAGCTGCTAAAGCTCCACCAACGCCAAACTGGGAATGGTGTTGGGAAATGGAAAAAGGCCTTGTAGAACCGGATTTGGTGATATGTTTAA] [-] EMBL CD133452 [TATTGTTTGTTAAAAATCAGCATTTGTCCTCTGCTTCATTTAATTCGATAGCTGATCAAATATTCTAGTAAATTAGACGGTTCACTATCACGAAATTCGTATACTATTACTACATATTTTAGACCTTTCATCTCAGGCTGTATATTTCATATTACGGTCTGATACCATCATTACTAATGTGATCTATTAGGATTCCAGCCAATATGCTTATTTATATCATGAAATTCTGGTCTTTTCCAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATATATTCTGGGATCGCTTACACAGCTGCTAAAGCTCCACCAACGCCAAACTGGGAATGGTGTTGGGAAATGGAAAAAGGCCTTGTAGAACCGGATTTGGTGATATGTTTAA] consensusID : consensus_9151#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [CTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATATATTCTGGGAGCGCATCACCGGGCAGGGCGGAGGGAA] [+] EMBL CD112798 [CTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATATATTCTGGGAGCGCATCACCGGGCAGGGCGGAGGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9151#0 AGTAAATAAAAAGCACGTTCGCAGTGTCGAATTCCAAGTTGTGAGCAAGGATGACTAGAC 60 consensus_9151#2 ------------------------------------------------------------ consensus_9151#1 ---------------------------------------------TATTGTTTGTTAAAA 15 consensus_9151#0 GTATGTCTCAGGGAATTTTTGTTGTTCTCGAAGGAGCAGATCGGGTAGGAAAAACAACAC 120 consensus_9151#2 ------------------------------------------------------------ consensus_9151#1 ATCAGCATTTGTCCTCTGCTTCATTTAATTCGATAGCTGATCAAATATTCTAGTAAATTA 75 consensus_9151#0 AAGCATCACTCCTAGCTAAAGCTTTGT-CGGAAATTACACAAAGAGAGACTCTGTCTGTC 179 consensus_9151#2 ---------------------CTTTGT-CGGAAATTACACAAAGAGAGACTCTGTCTGTC 38 consensus_9151#1 GACGGTTCACTATCACGAAATTCGTATACTATTACTACATATTTT-AGACCTTTCATCTC 134 * * * * **** * **** * * ** consensus_9151#0 AAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTAT--TTAAGTGGGA 237 consensus_9151#2 AAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTAT--TTAAGTGGGA 96 consensus_9151#1 AGGCTGT-ATATT-TCATATTACGGTCTGATACCATCATTACTAATGTGATCTATTAGGA 192 * * * ** * *** * * * ** * ** * * * * * * * * *** consensus_9151#0 TTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGC 297 consensus_9151#2 TTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGC 156 consensus_9151#1 TTCCAGCCAATA-TGCTTATTTATATCATGAAATTCTGGTCTTTTCCAGATGGGAAAGGC 251 ** * * ** * * ** ** * * * ************* consensus_9151#0 AAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATAT 357 consensus_9151#2 AAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATAT 216 consensus_9151#1 AAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATAT 311 ************************************************************ consensus_9151#0 ATTCTGGGATCGCTTACACAGCTGCTAAAGCTCCACCAACGCCAAACTGGGAATGGTGTT 417 consensus_9151#2 ATTCTGGGAGCGCAT---CACCGGGCAGGGCGGAGGGAA--------------------- 252 consensus_9151#1 ATTCTGGGATCGCTTACACAGCTGCTAAAGCTCCACCAACGCCAAACTGGGAATGGTGTT 371 ********* *** * ** * * * ** ** consensus_9151#0 GGGAAATGGAAAAAGGCCTTGTAGAACCGGATTTGGTGATA------- 458 consensus_9151#2 ------------------------------------------------ consensus_9151#1 GGGAAATGGAAAAAGGCCTTGTAGAACCGGATTTGGTGATATGTTTAA 419 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||