These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1408 fasta sequence [GTTTTATAAGCTTGTCTAAAAGTTGATGTTCTGTTTTGTTATTTTTTATTGAATATTTGGGAGGATACTATAACAATGAATCAAGGTCATTTTTAAGTGGCTCAAATAAATTAACATCAACTGCATCAATGGCTGCAGCGGCTGCAGCTGCGGCTGTTACAGCAGCTGATCGTCACTGGAGACAAATGGAAAATGCTAAATATACTAATCATCATCACCATCCACAACAAATGCATGAACGTGGTCAATTCAAGTCTAAAGATGAATTTGATCTGCAGGATAATCTACAAAGAATCAATTCAAAAATGGATACCAATTTCAGTGGCCATGATGATGATGATGAGGATTCCAGTGAAGAATCAAAACAATCTGATTCAAATGAACATAGTTCTAATGAAGATGAAGAAAGTTCTCCAACTGATGGACCATTATTTAATTCAGGAGAACTTTTACTAAATGGTGAAAACATTCCAAATTCAAATCATGGAACGTTTCTTAAAAAAGACCTGTTGGGAAATCATCAAAGTAAGGAGTATTCAAAATCAATAGGAAATAACAAGCGAAGAAAGACTATATCTATTGAACGTCAGAAAAACGAACAACTTCTGAGACAATATGTATTGGATGCTTGTTCAGTTTTATCTATGTTAGACCGTCGAATCGGTGGTCGACAAACTCGTTTGATAATATGTGTTAATGCGATCGCTAGGACAGTAGAAAATTCAGCATTGAATAAAAAACTTTTGGATTTTATGCATTTGTTAGATCATATTCTAATGAAGCCACCAACCGGGGGTAAAAGTTATGATGTCCCTTTAATTCTTGCTCCAATTGGGTCTACAGAAGGCGTGATGAATGACATACCACCAACAGTCTGGGTACCTAATGCTGTTGTGATAATTGCAACTAATATCTCAGGTATCAATGCCAATAATTCAAGAGCACATACTCTTGATTCAGTTAGTCTGAATGATCCTAACCGAATGCACCGAATGTCTTCCGCTTTAAGATTATCTTTGTCAAATTCTTCAGGAGGATTCAATCCTAAGATTTGGTATTCTATTCATCAGTTATGTCACTTACCCATCTACATAGAAAATGAGCCACTTTGTTTCAGAGTATATGATCAAACCAACGAACAACCATTTATTAGTCCTGCACGCTCAGCATCAAATATACAACAATCGCATCAAGAGAAAAAGACTGAAGTATCACAGCCAAAATCAATGATCGATCTTTATGTGGGNCAACATGATTTATTACATTTTAATAAAAAAAGATTTCGTCATCTTTTGACACTGACAGCTTTTACGGGTCGTATGGTGAAACTGGATAGATTATTCACCCAACGTATTATTTATCAAAGTGGTCAAAAAAGTTTATCATATCTAAGTGCTTTACAATATTT] [+] EMBL CD123076 [GTTTTATAAGCTTGTCTAAAAGTTGATGTTCTGTTTTGTTATTTTTTATTGAATATTTGGGAGGATACTATAACAATGAATCAAGGTCATTTTTAAGTGGCTCAAATAAATTAACATCAACTGCATCAATGGCTGCAGCGGCTGCAGCTGCGGCTGTTACAGCAGCTGATCGTCACTGGAGACAAATGGAAAATGCTAAATATACTAATCATCATCACCATCCACAACAAATGCATGAACGTGGTCAATTCAAGTCTAAAGATGAATTTGATCTGCAGGATAATCTACAAAGAATCAATTCAAAAATGGATACCAATTTCAGTGGCCATGATGATGATGATGA ] [-] EMBL CD122860 [ CACAACAAATGCATGAACGTGGTCAATTCAAGTCTAAAGATGAATTTGATCTGCAGGATAATCTACAAAGAATCAATTCAAAAATGGATACCAATTTCAGTGGCCATGATGATGATGATGAGGATTCCAGTGAAGAATCAAAACAATCTGATTCAAATGAACATAGTTCTAATGAAGATGAAGAAAGTTCTCCAACTGATGGACCATTATTTAATTCAGGAGAACTTTTACTAAATGGTGAAAACATTCCAAATTCAAATCATGGAACGTTTCTTAAAAAAGACCTGTTGGGAAATCATCAAAGTAAGGAGTATTCAAAATCAATAGGAAATAACAAGCGAAGAAAGACTATATCTATTGAACGTCAGAAAAACGAACAACTTCTGAGACAATATGTATTGGGTGCTCGTTCAGTTTTATCTATGTTAGACCGTCGAATCGGTGGTCGACAAACTCGTTTGATAATATGTGATAATGCGATCGCTAGGACAGTAGAAAATTCAGCATTGAATAAAAAACTTTTGGATTTTATGCATTTGTTAGATCATATTCTAA ] [+] EMBL CD116061 [ GATGAGGATTCCAGTGAAGAATCAAAACAATCTGATTCAAATGAACATAGTTCTAATGAAGATGAAGAAAGTTCTCCAACTGATGGACCATTATTTAATTCAGGAGAACTTTTACTAAATGGTGAAAACATTCTAAATTCAAATCATGGAACGTTTCTTAAAAAAGACCTGTTGGGAAATCATCAAAGTAAGGAGTATTCAAAATCAATAGGAAATAACAAGCGAAGAAAGACTATATCTATTGAACGTCAGAAAAACGAACAACTTCTGAGACAATATGTATTGGATGCTTGTTCAGTTTTATCTATGTTAGACCGTCGAATCGGTGGTCGACAAACTCGTTTGATAATATGTGTTAATGCGATCGCTAGGACAGTAGAAAATTCAGCATTGAATAAAAAACTTTTGGATTTTATGCATTTGTTAGATCATATTCTAATGAAGCCACCAACCGGGGGT ] [+] EMBL CD132228 [ AACATAGTTCTAATGAAGATGAAGAAAGTTCTCCAACTGATGGACCATTATTTAATTCAGGAGAACTTTTACTAAATGGTGAAAACATTCCAAATTCAAATCATGGAACGTTTCTTAAAAAAGACCTGTTGGGAAATCATCAAAGTAAGGAGTATTCAAAATCAATAGGAAATAACAAGCGAAGAAAGACTATATCTATTGAACGTCAGAAAAACGAACAACTTCTGAGACAATATGTATTGGATGCTTGTTCAGTTTTATCTATGTTAGACCGTCGAATCGGTGGTCGACAAACTCGTTTGATAATATGTGTTAATGCGATCGCTAGGACAGTAGAAAATTCAGCATTGAATAAAAAACTTTTGGATTTTATGCATTTGTTAGATCATATTCTAATGAAGCCACCAACCGGGGGTAAAAGTTATGATGTCCCTTTAATTCTTGCTC ] [+] EMBL CD192101 [ AAGGAGTATTCAAAATCAATAGGAAATAACAAGCGAAGAAAGACTATATCTATTGAACGTCAGAAAAACGAACAACTTCTGAGACAATATGTATTGGATGCTTGTTCAGTTTTATCTATGTTAGACCGTCGAATCGGTGGTCGACAAACTCGTTTGATAATATGTGTTAATGCGATCGCTAGGACAGTAGAAAATTCAGCACTGAATAAAAAACTTTTGGATTTTATGCATTTGTTAGATCATATTCTAATGAAGCCACCAACCGGGGG ] [+] EMBL CD115376 [ TGTTAATGCGATCGCTAGGACAGTAGAAAATTCAGCATTGAATAAAAAACTTTTGGATTTTATGCATTTGTTAGATCATATTCTAATGAAGCCACCAACCGGGGGTAAAGGTTATGATGTCCCTTTAATTCTTGCTCCAATTGGGTCTACAGAAGGCGTGATGAATGACATACCACCAACAGTCTGGGTACCTAATGCTGTTGTGATAATTGCAACTAATATCTCAGGTATCAATGCCAATAATTCAAGAGCACATACTCTTGATTCAGTTAGTCTGAATGATCCTAACCGAATGCACCGAATGTCTTCCGCTTTAAGATTATCTTTGTCAAATTCTTCAGGAGGATTCAATCCTAAGATTTGGTATTCTATTCATCAGTTATGTCACTTACCCATCTACATAGAAAATGAGCCACTTTGTTTCAGAGTATATGATCAAACCAACGAACAACCATTTATTAGTCCTGCACGCTCAGCATCAAATATACAACAATCGCATCAAGAGAAAAAGACTGAAGTATCACAGCCAAAATCAATGATCGATCTTTATGTGGGNCAACATGATTTATTACATTTTAATA ] [+] EMBL CD178576 [ ATACTCTTGATTCAGTTAGTCTGAATGATCCTAACCGAATGCACCGAATGTCTTCCGCTTTAAGATTATCTTTGTCAAATTCTTCAGGAGGATTCAATCCTAAGATTTGGTATTCTATTCATCAGTTATGTCATTTACCCATCTACATAGAAAATGAGCCACTTTGTTTCAGAGTATATGATCAAACCAACGAACAACCATTTATTAGTCCTGCACGCTCAGCATCAAATATACAACAATCGCATCAAGAGAAAAAGACTGAAGTATCACAGCCAAAATCAATGATCGATCTTTATGTGGGCAAACATGATTTATTACATTTTAATAAAAAAAGATTTCGTCATCTTTTGACACTGACAGCTTTTACGGGTCGTATGGTGAAACTGGATAGATTATTCACCCAACGTATTATTTATCAAAGTGGTCAAAAAAGTTTATCATATCTAAGTGCTTTACAATATTT] consensusID : consensus_9173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [GGGAATTCGATTAAAATAACATGCCACGTTACTGATGGACCATTATTTAATTCAGGAGAACTTTTACTAAATGGTGAAAACATTCCAAATTCAAATCATGGAACGTTTCTTAAAAAAGACCTGTTGGGAAATCATCAAAGTAATGTTTATTCAAAATCAATAGGAAATAACAAGCGAAGAAAGACTATACCTATTGAACGTCAGAAAAACGAACAACTTCTGAGACAATATGTATCGGATGCTTGTTCAGTTTTATCTATGTTAGACCGTCGAATCGGTGGTCGACAAACTCGTTTGATAATATGTGTTAATGCGATCGCTATGACAGTAGAAAATTCAGCATTGAATAAAAAACTTTTGGATTTTATGCATTTGTCAGATCATATTCTAATGAAGCCACCAACCGGGGGTAAAAGTTATGATGTCCCTTTACTTCTTGCTCCGATT] [+] EMBL CD115409 [GGGAATTCGATTAAAATAACATGCCACGTTACTGATGGACCATTATTTAATTCAGGAGAACTTTTACTAAATGGTGAAAACATTCCAAATTCAAATCATGGAACGTTTCTTAAAAAAGACCTGTTGGGAAATCATCAAAGTAATGTTTATTCAAAATCAATAGGAAATAACAAGCGAAGAAAGACTATACCTATTGAACGTCAGAAAAACGAACAACTTCTGAGACAATATGTATCGGATGCTTGTTCAGTTTTATCTATGTTAGACCGTCGAATCGGTGGTCGACAAACTCGTTTGATAATATGTGTTAATGCGATCGCTATGACAGTAGAAAATTCAGCATTGAATAAAAAACTTTTGGATTTTATGCATTTGTCAGATCATATTCTAATGAAGCCACCAACCGGGGGTAAAAGTTATGATGTCCCTTTACTTCTTGCTCCGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9173#0 GTTTTATAAGCTTGTCTAAAAGTTGATGTTCTGTTTTGTTATTTTTTATTGAATATTTGG 60 consensus_9173#1 ------------------------------------------------------------ consensus_9173#0 GAGGATACTATAACAATGAATCAAGGTCATTTTTAAGTGGCTCAAATAAATTAACATCAA 120 consensus_9173#1 ------------------------------------------------------------ consensus_9173#0 CTGCATCAATGGCTGCAGCGGCTGCAGCTGCGGCTGTTACAGCAGCTGATCGTCACTGGA 180 consensus_9173#1 ------------------------------------------------------------ consensus_9173#0 GACAAATGGAAAATGCTAAATATACTAATCATCATCACCATCCACAACAAATGCATGAAC 240 consensus_9173#1 ------------------------------------------------------------ consensus_9173#0 GTGGTCAATTCAAGTCTAAAGATGAATTTGATCTGCAGGATAATCTACAAAGAATCAATT 300 consensus_9173#1 ------------------------------------------------------------ consensus_9173#0 CAAAAATGGATACCAATTTCAGTGGCCATGATGATGATGATGAGGATTCCAGTGAAGAAT 360 consensus_9173#1 ------------------------------------------------------------ consensus_9173#0 CAAAACAATCTGATTCAAATGAACATAGTTCTAATGAAGATGAAGAAAGTTCTCCAACTG 420 consensus_9173#1 ------------------------GGGAATTCGATTAAAATAAC--ATGCCACGTTACTG 34 * ** ** ** * * * **** consensus_9173#0 ATGGACCATTATTTAATTCAGGAGAACTTTTACTAAATGGTGAAAACATTCCAAATTCAA 480 consensus_9173#1 ATGGACCATTATTTAATTCAGGAGAACTTTTACTAAATGGTGAAAACATTCCAAATTCAA 94 ************************************************************ consensus_9173#0 ATCATGGAACGTTTCTTAAAAAAGACCTGTTGGGAAATCATCAAAGTAAGGAGTATTCAA 540 consensus_9173#1 ATCATGGAACGTTTCTTAAAAAAGACCTGTTGGGAAATCATCAAAGTAATGTTTATTCAA 154 ************************************************* * ******* consensus_9173#0 AATCAATAGGAAATAACAAGCGAAGAAAGACTATATCTATTGAACGTCAGAAAAACGAAC 600 consensus_9173#1 AATCAATAGGAAATAACAAGCGAAGAAAGACTATACCTATTGAACGTCAGAAAAACGAAC 214 *********************************** ************************ consensus_9173#0 AACTTCTGAGACAATATGTATTGGATGCTTGTTCAGTTTTATCTATGTTAGACCGTCGAA 660 consensus_9173#1 AACTTCTGAGACAATATGTATCGGATGCTTGTTCAGTTTTATCTATGTTAGACCGTCGAA 274 ********************* ************************************** consensus_9173#0 TCGGTGGTCGACAAACTCGTTTGATAATATGTGTTAATGCGATCGCTAGGACAGTAGAAA 720 consensus_9173#1 TCGGTGGTCGACAAACTCGTTTGATAATATGTGTTAATGCGATCGCTATGACAGTAGAAA 334 ************************************************ *********** consensus_9173#0 ATTCAGCATTGAATAAAAAACTTTTGGATTTTATGCATTTGTTAGATCATATTCTAATGA 780 consensus_9173#1 ATTCAGCATTGAATAAAAAACTTTTGGATTTTATGCATTTGTCAGATCATATTCTAATGA 394 ****************************************** ***************** consensus_9173#0 AGCCACCAACCGGGGGTAAAAGTTATGATGTCCCTTTAATTCTTGCTCCAATTGGGTCTA 840 consensus_9173#1 AGCCACCAACCGGGGGTAAAAGTTATGATGTCCCTTTACTTCTTGCTCCGATT------- 447 ************************************** ********** *** consensus_9173#0 CAGAAGGCGTGATGAATGACATACCACCAACAGTCTGGGTACCTAATGCTGTTGTGATAA 900 consensus_9173#1 ------------------------------------------------------------ consensus_9173#0 TTGCAACTAATATCTCAGGTATCAATGCCAATAATTCAAGAGCACATACTCTTGATTCAG 960 consensus_9173#1 ------------------------------------------------------------ consensus_9173#0 TTAGTCTGAATGATCCTAACCGAATGCACCGAATGTCTTCCGCTTTAAGATTATCTTTGT 1020 consensus_9173#1 ------------------------------------------------------------ consensus_9173#0 CAAATTCTTCAGGAGGATTCAATCCTAAGATTTGGTATTCTATTCATCAGTTATGTCACT 1080 consensus_9173#1 ------------------------------------------------------------ consensus_9173#0 TACCCATCTACATAGAAAATGAGCCACTTTGTTTCAGAGTATATGATCAAACCAACGAAC 1140 consensus_9173#1 ------------------------------------------------------------ consensus_9173#0 AACCATTTATTAGTCCTGCACGCTCAGCATCAAATATACAACAATCGCATCAAGAGAAAA 1200 consensus_9173#1 ------------------------------------------------------------ consensus_9173#0 AGACTGAAGTATCACAGCCAAAATCAATGATCGATCTTTATGTGGGNCAACATGATTTAT 1260 consensus_9173#1 ------------------------------------------------------------ consensus_9173#0 TACATTTTAATAAAAAAAGATTTCGTCATCTTTTGACACTGACAGCTTTTACGGGTCGTA 1320 consensus_9173#1 ------------------------------------------------------------ consensus_9173#0 TGGTGAAACTGGATAGATTATTCACCCAACGTATTATTTATCAAAGTGGTCAAAAAAGTT 1380 consensus_9173#1 ------------------------------------------------------------ consensus_9173#0 TATCATATCTAAGTGCTTTACAATATTT 1408 consensus_9173#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||