These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence [TTTTTTTTTTTTTTTTTTTTAAAATTGGGCGAAAATTTATTAATGTATCATTACTACCTACACAGAAACAGCAACATTCGATGCTGTAGGGCCAGTGAAATGTCACTGAAACCTAGCCAAGTCATCCGGCAGTCGGGTCACTAAATATCGAACAAATCATCGATCCCCGTCAAGGTCAGGGACAATCAACGCGCACCGGTTAATCGTACACCATGGACTGGTCCATGCGGCAGTGGTTCTACTTTCACTTGTATCTACTTTAACTAATATATTCCTGTAATAACCTCCTTTGTGTTGTAAAGTCTCCATTGCATCCATGGTCCCTTGATACGTCGATGGGGCAATCCACGTAAGGTGCTGATCGCGAGGTGTGACTTCGAAGTTAGCTTGTTCGTTACACCGTTTCCCGCCTAACTCGAGTAGGCCTCCATCAGTCGACATAGATCACCATTGTTGATG] [+] EMBL AI395056 [TTTTTTTTTTTTTTTTTTTTAAAATTGGGCGAAAATTTATTAATGTATCATTACTACCTACACAGAAACAGCAACATTCGATGCTGTAGGGCCAGTGAAATGTCACTGAAACCTAGCCAAGTCATCCGGCAGTCGGGTCACTAAATATCGAACAAATCATCGATCCCCGTCAAGGTCAGGGACAATCAACGCGCACCGGTTAATCGTACACCATGGACTGGTCCATGCGGCAGTGGTTCTACTTTCACTTGTATCTACTTTAACTAATATATTCCTGTAATAACCTCCTTTGTGTTGTAAAGTCTCCATTGCATCCATGGTCCCTTGATACGTCGATGGGGCAATCCACGTAAGGTGCTGATCGCGAGGTGTGACTTCGAAGTTAGCTTGTTCGTTACACCGTTTCCCGCCTAACTCGAGTAGGCCTCCATCAGTCGACATAGATCACCATTGTTGATG] consensusID : consensus_9180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [AATGATATGTAAACTAGTAAACTCATTCGAATTGTTCTCCTGCAGTTCTAATGAGAAATGATGACTTAGTTGGAGTTACAGACATGTTGATAATGAAATAATCATTATCAATAAGATTGGATGATTAGCTTACAATGTTCTCAAATTAATTTCACTTGGAAATTCAGATTACTGCATATAAATCAGTAACTGAAATATCAACTATTCACTCTGAGAGGTCTTGAATTCTATCCCTGGTGGTGATGGTGATGGGGGTTATGTATCATCTTTATTAAAAGATAACATTCTAGAAAGAAGCTCGTTATCACTAACACCTCCAAATTTTCAATAATCCCTCAAATAACATCAATTTATGACTGACATCTACTATTGAATAACAGTATTGTAGACCATNCATGTTGATGATCTATGTCGAATGATTGGAGGCCTACTCGAGTT] [+] EMBL CD197340 [AATGATATGTAAACTAGTAAACTCATTCGAATTGTTCTCCTGCAGTTCTAATGAGAAATGATGACTTAGTTGGAGTTACAGACATGTTGATAATGAAATAATCATTATCAATAAGATTGGATGATTAGCTTACAATGTTCTCAAATTAATTTCACTTGGAAATTCAGATTACTGCATATAAATCAGTAACTGAAATATCAACTATTCACTCTGAGAGGTCTTGAATTCTATCCCTGGTGGTGATGGTGATGGGGGTTATGTATCATCTTTATTAAAAGATAACATTCTAGAAAGAAGCTCGTTATCACTAACACCTCCAAATTTTCAATAATCCCTCAAATAACATCAATTTATGACTGACATCTACTATTGAATAACAGTATTGTAGACCATNCATGTTGATGATCTATGTCGAATGATTGGAGGCCTACTCGAGTT] consensusID : consensus_9180#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 431 fasta sequence [AGGTCATTTAAACAGTCGCTTATCCTCACCCTTCTAAATTAACTTAATCGATATAATCTGTCATTTACTAAGTAATTGATGTTAAAAGTATTTTAACTTAATCGCTCAATCGCATACACCATACTTTTTAAGTCCTAATTAATATGTGGTTTAAATTCATTGAATTCCATGTGATTTAACCAACTTTAAGAACTTAAAACAGGTAACCAAGGTTATGGATTTATATTTATGATATGATTGTACAAAAAACTTGTTTTACTGAGATTAAAACTACTCAAATGATAGTGTAGATCATCAAAGTTGATTATCTATGTCGAAAAATTGGAGGCCTATTCGAGTTAGACGGGAACGGAGTAACGAACAAGCTAACTTCGAAGTCACACCTCGCGATCAGCATATTACGAGGATTACCCCATTCGACGTATTAAAGT] [+] EMBL CD153576 [AGGTCATTTAAACAGTCGCTTATCCTCACCCTTCTAAATTAACTTAATCGATATAATCTGTCATTTACTAAGTAATTGATGTTAAAAGTATTTTAACTTAATCGCTCAATCGCATACACCATACTTTTTAAGTCCTAATTAATATGTGGTTTAAATTCATTGAATTCCATGTGATTTAACCAACTTTAAGAACTTAAAACAGGTAACCAAGGTTATGGATTTATATTTATGATATGATTGTACAAAAAACTTGTTTTACTGAGATTAAAACTACTCAAATGATAGTGTAGATCATCAAAGTTGATTATCTATGTCGAAAAATTGGAGGCCTATTCGAGTTAGACGGGAACGGAGTAACGAACAAGCTAACTTCGAAGTCACACCTCGCGATCAGCATATTACGAGGATTACCCCATTCGACGTATTAAAGT] [+] EMBL CD153617 [AGGTCATTTAAACAGTCGCTTATCCTCACCCTTCTAAATTAACTTAATCGATATAATCTGTCATTTACTAAGTAATTGATGTTAAAAGTATTTTAACTTAATCGCTCAATCGCATACACCATACTTTTTAAGTCCTAATTAATATGTGGTTTAAATTCATTGAATTCCATGTGATTTAACCAACTTTAAGAACTTAAAACAGGTAACCAAGGTTATGGATTTATATTTATGATATGATTGTACAAAAAACTTGTTTTACTGAGATTAAAACTACTCAAATGATAGTGTAGATCATCAAAGTTGATTATCTATGTCGAAAAATTGGAGGCCTATTCGAGTTAGACGGGAACGGAGTAACGAACAAGCTAACTTCGAAGTCACACCTCGCGATCAGCATATTACGAGGATTAa ] consensusID : consensus_9180#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [CGCATCAGTTTAATCATACGCCATGGACTGCCGATGAGGGCAGTGATTCTACTTCTCTNNGTATCTATTTANNCTAATATATCCNTGTAATAACGTCCTNTGTGTTGTACAGTCTTCAGAGCATCCATGGTCCCCTGATACGTCGTAGGGGCAATCCGAGGTGTGACTTCGATGTTAGCTTGTTCGTTACACCGTTCCCGTCTAACTCGAGTAGGCCTCCAATCATTCGACATAGATCATCAACGTTGATAGTCTACACTATCATAACCTTAATCTAGTCTCCCTAAACTTTCATGAATTAAGGTTAAATACATAGTTCTTATTCTATGATTGCGTAATATGATGAACATTTTGAAAAGATCATATGCAAAATTTACTACTTATTAAGTAAAGAAGGTATAACTTA] [-] EMBL CD072350 [CGCATCAGTTTAATCATACGCCATGGACTGCCGATGAGGGCAGTGATTCTACTTCTCTNNGTATCTATTTANNCTAATATATCCNTGTAATAACGTCCTNTGTGTTGTACAGTCTTCAGAGCATCCATGGTCCCCTGATACGTCGTAGGGGCAATCCGAGGTGTGACTTCGATGTTAGCTTGTTCGTTACACCGTTCCCGTCTAACTCGAGTAGGCCTCCAATCATTCGACATAGATCATCAACGTTGATAGTCTACACTATCATAACCTTAATCTAGTCTCCCTAAACTTTCATGAATTAAGGTTAAATACATAGTTCTTATTCTATGATTGCGTAATATGATGAACATTTTGAAAAGATCATATGCAAAATTTACTACTTATTAAGTAAAGAAGGTATAACTTA] consensusID : consensus_9180#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 343 fasta sequence [CGCGCATCAGTTAATCATACGCCATGGACTGGCCCATGCAGCAGTGGTTCTACTTTTGCTTGTATCTACTTTAACTAATATATTCTTGTAATAACATCCTTTGTGTTGAACAGTCTTCAGAGCATCCACGATCCCTTGATATGTCGATGGGGCAATCCACGTAAGGTGCTGATCGCGAGGTGTGAATTCCAAGTTAGCTTATTCGTTACACCGTTCCCGTCTACCTCGAGTAGGCCTCCAATCATTCGACATAGATCATCAACGTTGATGGTCCACACTATAAACCAACTTATTATTCAGTATTTTTTTTGCATTGAGGCAATAAGTGTCAAACGTAGATATA] [+] EMBL CD088745 [CGCGCATCAGTTAATCATACGCCATGGACTGGCCCATGCAGCAGTGGTTCTACTTTTGCTTGTATCTACTTTAACTAATATATTCTTGTAATAACATCCTTTGTGTTGAACAGTCTTCAGAGCATCCACGATCCCTTGATATGTCGATGGGGCAATCCACGTAAGGTGCTGATCGCGAGGTGTGAATTCCAAGTTAGCTTATTCGTTACACCGTTCCCGTCTACCTCGAGTAGGCCTCCAATCATTCGACATAGATCATCAACGTTGATGGTCCACACTATAAACCAACTTATTATTCAGTATTTTTTTTGCATTGAGGCAATAAGTGTCAAACGTAGATATA] [+] EMBL CD088759 [CGCGCATCAGTTAATCATACGCCATGGACTGGCCCATGCAGCAGTGGTTCTACTTTTGCTTGTATCTACTTTAACTAATATATTCTTGTAATAACATCCTTTGTGTTGAACAGTCTTCAGAGCATCCACGATCCCTTGATATGTCGATGGGGCAATCCACGTAAGGTGCTGATCGCGAGGTGTGAATTCCAAGTTAGCTTATTCGTTACACCGTTCCCGTCTACCTCGAGTAGGCCTCCAATCATTCGACATAGATCATCAACGTTGATGGTCCACACTATAAACCAACTTATTATTCAGTATTTTTTTTGCATTGAGGCAATAAGTGTCAAACGTAGATATA] consensusID : consensus_9180#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [CAACGCGCATCAGTCAATCATGCGCCATGGAGTGGCCCATGCGGCAGTGGTTCTACTTTCGCTTGTATCTACTTTAACTAATATACTCCTGTAATAACCTCCTTCGTGTTGTACAGTGTTCAGAGCATCTATGGTCCCTTGATACGTCGATGGGGGAATCCACGTAAGGTGCTGGTCGCGAGGTGTAACTTCGAAGTTAGCTTATTCGTTACACCATCCCCGTCCAACTCGAGTAGGCCTCCAATCATTCGACATAGATCATCAACGTTGATGATCCACACTGGTGAG] [-] EMBL CD117933 [CAACGCGCATCAGTCAATCATGCGCCATGGAGTGGCCCATGCGGCAGTGGTTCTACTTTCGCTTGTATCTACTTTAACTAATATACTCCTGTAATAACCTCCTTCGTGTTGTACAGTGTTCAGAGCATCTATGGTCCCTTGATACGTCGATGGGGGAATCCACGTAAGGTGCTGGTCGCGAGGTGTAACTTCGAAGTTAGCTTATTCGTTACACCATCCCCGTCCAACTCGAGTAGGCCTCCAATCATTCGACATAGATCATCAACGTTGATGATCCACACTGGTGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9180#0 TTTTTTTTTTTTTTTTTTTTAAAATTGGGCGAAAATTTATTAATGTATCATTACTACCTA 60 consensus_9180#5 ------------------------------------------------------------ consensus_9180#4 ------------------------------------------------------------ consensus_9180#3 ------------------------------------------------------------ consensus_9180#1 ------------------------------------------------------------ consensus_9180#2 ------------------------------------------------------------ consensus_9180#0 CACAGAAACAGCAACATTCGATGCTGTAGGGCCAGTGAAATGTCACTGAAACCTAGCCAA 120 consensus_9180#5 ------------------------------------------------------------ consensus_9180#4 ------------------------------------------------------------ consensus_9180#3 ------------------------------------------------------------ consensus_9180#1 ------------------------------------------------------------ consensus_9180#2 ------------------------------------------------------------ consensus_9180#0 GTCATCCGGCAGTCGGGTCACTAAATATCGAACAAATCATCGATCCCCGTCAAGGTCAGG 180 consensus_9180#5 ------------------------------------------------------------ consensus_9180#4 ------------------------------------------------------------ consensus_9180#3 ------------------------------------------------------------ consensus_9180#1 ------------------------------------------------------------ consensus_9180#2 ------------------------------------------------------------ consensus_9180#0 GACAATCAACGCGCACCGGTT-AATCGTACACCATGGACTGGTCCATGCGGCAGTGGTTC 239 consensus_9180#5 ------CAACGCGCATCAGTC-AATCATGCGCCATGGAGTGGCCCATGCGGCAGTGGTTC 53 consensus_9180#4 ---------CGCGCATCAGTT-AATCATACGCCATGGACTGGCCCATGCAGCAGTGGTTC 50 consensus_9180#3 -----------CGCATCAGTTTAATCATACGCCATGGACTGCCGATGAGGGCAGTGATTC 49 consensus_9180#1 --AATGATATGTAAACTAGTAAACTCATTCGAATTGTTCTCCTGCA-GTTCTAATGAGAA 57 consensus_9180#2 ---AGGTCATTTAAAC-AGTC-GCTTATCCTCACCCTTCTAAATTA-ACTTAATCGATAT 54 * ** * * * * * * consensus_9180#0 TACTTTCACTTGTATCTACTTTAACTAATATATTCCTGTAATAA-CCTCCTTTGTGTTGT 298 consensus_9180#5 TACTTTCGCTTGTATCTACTTTAACTAATATACTCCTGTAATAA-CCTCCTTCGTGTTGT 112 consensus_9180#4 TACTTTTGCTTGTATCTACTTTAACTAATATATTCTTGTAATAA-CATCCTTTGTGTTGA 109 consensus_9180#3 TACTTCTCTNNGTATCTATTTANNCTAATATATCCNTGTAATAA-CGTCCTNTGTGTTGT 108 consensus_9180#1 ATGATGACTTAGTTGGAGTTACAGACATGTTGATAATGAAATAATCATTATCAATAAGAT 117 consensus_9180#2 AATCTGTCATTTACTAAGTAATTG--ATGTTAAAAGTATTTTAA-CTTAATCGCTCAATC 111 * * * * *** * * * * consensus_9180#0 AAAGTCTCCATTGCATCCATGGTCCCTTGATACGTCGATGGGGCAATCCACGTAAGGTGC 358 consensus_9180#5 ACAGTGTTCAGAGCATCTATGGTCCCTTGATACGTCGATGGGGGAATCCACGTAAGGTGC 172 consensus_9180#4 ACAGTCTTCAGAGCATCCACGATCCCTTGATATGTCGATGGGGCAATCCACGTAAGGTGC 169 consensus_9180#3 ACAGTCTTCAGAGCATCCATGGTCCCCTGATACGTCGTAGGGGCAATCC----------- 157 consensus_9180#1 TGGATGATTAGCTTA-CAATGTTCTCAAATTAATTTCACTTGGAAATTCAGAT----TAC 172 consensus_9180#2 GCATACACCATACTTTTTAAGTCCT--AATTAATATGTGGTTTAAATTCATTGA----AT 165 * * * * ** *** * consensus_9180#0 TGATCGCGAGGT--GTGACTTCGAAGTTAGCTTGTTCGTTACACCGTTTCCCG---CCTA 413 consensus_9180#5 TGGTCGCGAGGT--GTAACTTCGAAGTTAGCTTATTCGTTACACCATC-CCCG---TCCA 226 consensus_9180#4 TGATCGCGAGGT--GTGAATTCCAAGTTAGCTTATTCGTTACACCGTT-CCCG---TCTA 223 consensus_9180#3 -------GAGGT--GTGACTTCGATGTTAGCTTGTTCGTTACACCGTT-CCCG---TCTA 204 consensus_9180#1 TGCATATAAATCA-GTAACTGAAATATCAACT-ATTCACTCTGAGAGGTCTTGAATTCTA 230 consensus_9180#2 TCCATGTGATTTAACCAACTTTAAGAACTTAAAACAGGTAACCAAGGTTATGGATTTATA 225 * * * * * * consensus_9180#0 ACTCGAGTAGGCCTCCA-TCAGTCGACATAGATCACCATTGTTGATG------------- 459 consensus_9180#5 ACTCGAGTAGGCCTCCAATCATTCGACATAGATCATCAACGTTGATGATCCACA--CTGG 284 consensus_9180#4 CCTCGAGTAGGCCTCCAATCATTCGACATAGATCATCAACGTTGATGGTCCACA--CTAT 281 consensus_9180#3 ACTCGAGTAGGCCTCCAATCATTCGACATAGATCATCAACGTTGATAGTCTACA--CTAT 262 consensus_9180#1 TCCCTGGTGGTGATGGTGATGGGGGTTATGTATCATCTTTATTAAAAGATAACATTCTAG 290 consensus_9180#2 TTTATGATATGATTGTA--CAAAAAACTTGTTTTACTGAGATTAAAACTACTCAAATGAT 283 * * * * * ** * consensus_9180#0 ------------------------------------------------------------ consensus_9180#5 TGAG-------------------------------------------------------- 288 consensus_9180#4 AAACCAACTTATTATT-----CAGTATTTTTTTTGCATTGAGGCAATAAGTGTCAAACGT 336 consensus_9180#3 CATAACCTTAATCTAG-----TCTCCCTAAACTTTCATGAATTAAGGTTAAATACATAGT 317 consensus_9180#1 AAAGAAGCTCGTTATCACTAACACCTCCAAATTTTCAATAATCCCTCAAATAACATCAAT 350 consensus_9180#2 AGTGTAGATCATCAAAGT---TGATTATCTATGTCGAAAAAT---TGGAGGCCTATTCGA 337 consensus_9180#0 ------------------------------------------------------------ consensus_9180#5 ------------------------------------------------------------ consensus_9180#4 AGATATA----------------------------------------------------- 343 consensus_9180#3 TCTTATTCTATGATTGCGTAATATGATGAACATTTTGAAAAGATCATATGCAAAATTTAC 377 consensus_9180#1 TTATGACTGACATCTACTATTGAATAACAGTATTGTAGACCATNCATGTTGATGATCTAT 410 consensus_9180#2 GTTAGACGGGAACGGAGTAACGAACAA-GCTAACTTCGAAGTCACACCTCG-CGATCAGC 395 consensus_9180#0 ------------------------------------ consensus_9180#5 ------------------------------------ consensus_9180#4 ------------------------------------ consensus_9180#3 TACTTATTAAGTAAAGAAGGTATAACTTA------- 406 consensus_9180#1 GTCGAATGATTGGAGGCCTACTCGAGTT-------- 438 consensus_9180#2 ATATTACGAGGATTACCCCATTCGACGTATTAAAGT 431 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||