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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9188#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 897 fasta sequence
[TTCGGCACGAGGGCCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCGAAATCCACTTTCTTCTTTTCCTACTAAAATTGCATTTATGATAAACACCTAGTGTTATGAATAACATTGAAATCTGCCGGTCACCTTTGAAATAGCATTCAGCATTATTATGTATTTATTTAGTATTTATATACAGGGATACGTGCTATTGTGCAGTTCCACTTTTCCAAGTGCTTAACTAATTACATAAAGTAAAATGGGATAAATGAATATTAAGAATAAATCTCAGTCAATGTTAGTTCCTGTGATTAATTAATTCTTCCAATCTTTTTTCTATGATAAAGCTCTTTTTTGTATTCTGTTTCACTGGATAACAAATCATTCATTTTTATACATACATGTGTGTTGGGTCGGTTTAAACGAAAACGTAGACCTTATTCAACATTCCACTTGTATGATGAAAAATGTGACAGAGTACGTTACATTGAGGGCGAACTNTNTTGTTTCTACTTCTTATGTCTTTTCACATGNCAACACGTTNTTTTACAAAGTTACTTTTTTGCTTTCACCTAATGAGTTGNAATTTGNCTTTTAATTNTNAATATTTATNGACAGNTACTTCTATCATTCCTTAAATGATATAATGNTATTACCCACACAGAAACCACTGATGGTACCGATATAAGCATTGNCTATCTAATNACATGTTTTACGCTCAATATN]
[+] EMBL CD079897 [TTCGGCACGAGGGCCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCGAAATCCACTTTCTTCTTTTCCTACTAAAATTGCATTTATGATAAACACCTAGTGTTATGAATAACATTGAAATCTGCCGGTCACCTTTGAAATAGCATTCAGCATTATTATGTATTTATTTAGTATTTATATACAGGGATACGTGCTATTGTGCAGTTCCACTTTTCCAAGTGCTTAACTAATTACATAAAGTAAAATGGGATAAATGAATATTAAGAATAAATCTCAGTCAATGTTAGTTCCTGTGATTAATTAATTCTTCCAATCTTTTTTCTATGATAAAGCTCTTTTTTGTATTCTGTTTCACTGGATAACAAATCATTCATTTTTATACATACATGTGTGTTGGGTCGGTTTAAACGAAAACGTAGACCTTATTCAACATTCCACTTGTATGATGAAAAATGTGACAGAGTACGTTACATTGAGGGCGAACTNTNTTGTTTCTACTTCTTATGTCTTTTCACATGNCAACACGTTNTTTTACAAAGTTACTTTTTTGCTTTCACCTAATGAGTTGNAATTTGNCTTTTAATTNTNAATATTTATNGACAGNTACTTCTATCATTCCTTAAATGATATAATGNTATTACCCACACAGAAACCACTGATGGTACCGATATAAGCATTGNCTATCTAATNACATGTTTTACGCTCAATATN]
consensusID : consensus_9188#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 634 fasta sequence
[CCAACACATGATCCTAAAATGAATATCACTGTTCATTTAACATCATCAGAGTGTTTAGATTATTTGGATAGATTACAAGCTGGAAAACAGTCACAATCACCATTATTACATCATAATCAAGCGGAGAATAAAGAATCAACGTCTAGTTTTAGTTCAGATGTTACCACAAATATTACTACTACTGCTACTACTATAAGTACGGGTAGTAGTATTAAAAACAGTACTGCTTCTGATATATGCAATAAGAATAGTATCTACAAAGAAGATTTTGATCTAATGAATGAAGAATCCATGAGAATTGAAGAGGCTACATTAGAAACACCAGATATTGAAATGAACGGTGACAATGATATCAATAATAATGAGGAAGATATTGAAGAACAGTATTACAATATGACCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCGAAATCCACTTTCTTCT]
[+] EMBL CD078564 [CCAACACATGATCCTAAAATGAATATCACTGTTCATTTAACATCATCAGAGTGTTTAGATTATTTGGATAGATTACAAGCTGGAAAACAGTCACAATCACCATTATTACATCATAATCAAGCGGAGAATAAAGAATCAACGTCTAGTTTTAGTTCAGATGTTACCACAAATATTACTACTACTGCTACTACTATAAGTACGGGTAGTAGTATTAAAAACAGTACTGCTTCTGATATATGCAATAAGAATAGTATCTACAAAGAAGATTTTGATCTAATGAATGAAGAATCCATGAGAATTGAAGAGGCTACATTAGAAACACCAGATATTGAAATGAACGGTGACAATGATATCAATAATAATGAGGAAGATATTGAAGAACAGTATTACAATATGACCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTNTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCC CTAAACACATCGA ]
[+] EMBL CD169768 [ ACCATTATTACATCATAATCAAGCGGAGAATAAAGAATCAACGTCTAGTTTTAGTTCAGATGTTACCACAAATATTACTACTACTGCTACTACTATAAGTACGGGTAGTAGTATTAAAAACAGTACTGCTTCTGATATATGCAATAAGAATAGTATCTACAAAGAAGATTTTGATCTAATGAATGAAGAATCCATGAGAATTGAAGAGGCTACATTAGAAACACCAGATATTGAAATGAACGGTGACAATGATATCAATAATAATGAGGAAGATATTGAAGAACAGTATTACAATATGACCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCGAAATCCACTTTCTTCT]
[+] EMBL CD169340 [ ACCATTATTACATCATAATCAAGCGGAGAATAAAGAATCAACGTCTAGTTTTAGTTCAGATGTTACCACAAATATTACTACTACTGCTACTACTATAAGTACGGGTAGTAGTATTAAAAACAGTACTGCTTCTGATATATGCAATAAGAATAGTATCTACAAAGAAGATTTTGATCTAATGAATGAAGAATCCATGAGAATTGAAGAGGCTACATTAGAAACACCAGATATTGAAATGAACGGTGACAATGATATCAATAATAATGAGGAAGATATTGAAGAACAGTATTACAATATGACCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCGAAA ]
[-] EMBL CD169550 [ CCATTATTACATCATAATCAAGCGGAGAATAAAGAATCAACGTCTAGTTTTAGTTCAGATGTTACCACAAATATTACTACTACTGCTACTACTATAAGTACGGGTAGTAGTATTGAAAACAGTACTGCTTCTGATATATGCAATAAGAATAGTATCTACAAAGAAGATTTTGATCTAATGAATGAAGAATCCATGAGAATTGAAGAGGCTACATTAGAAACACCAGATATTGAAATGAACGGTGACAATGATATCAATAATAATGAGGAAGATATTGAAGAACAGTATTACAATATGACCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCGAAAT ]
[-] EMBL CD169681 [ CCATTATTACATCATAATCAAGCGGAGAATAAAGAATCAACGTCTAGTTTTAGTTCAGATGTTACCACAAATATTACTACTACTGCTACTACTATAAGTACGGGTAGTAGTATTAAAAACAGTACTGCTTCTGATATATGCAATAAGAATAGTATCTACAAAGAAGATTTTGATCTAATGAATGAAGAATCCATGAGAATTGAAGAGGCTACATTAGAAACACCAGATATTGAAATGAACGGTGACAATGATATCAATAATAATGAGGAAGATATTGAAGAACAGTATTACAATATGACCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCGAAAT ]
[-] EMBL CD169728 [ TAGTTTTAGTTCAGATGTTACCACAAATATTACTACTGCTGCTNCTACTATAAGTACGGGTAGTAGTATTAAAAACAGTACTGCTTNTGATATATGCAATAAGAATAGTATCTACAAAGAAGATTTTGATCTAATGAATGAAGAATCCATGAGAATTGAAGAGGCTACATTAGAAACACCAGATATTGAAATGAACGGTGACAATGATATCAATAATAATGAGGAAGATATTGAAGAACAGTATTACAATATGACCGATTGTAATGAGATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCGAAAT ]
[-] EMBL CD169493 [ AGTTCAGATGTTACCACAAATATTACTACTACTGCTACTACTATAAGTACGGGTAGTAGTATTAAAAACAGTACTGCTTCTGATATATGCAATAAGAATAGTATCTACAAAGAAGATTTTGATCTAATGAATGAAGAATCCATGAGAATTGAAGAGGCTACATTAGAAACACCAGATATTGAAATGAACGGTGACAATGATATCAATAATAATGAGGAAGATATTGAAGAACAGTATTACAATATGACCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCGAAAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9188#0 TTCGGCACGAGGGCCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAA 60
consensus_9188#1 ------------------------------------------------------------
consensus_9188#0 ACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAA 120
consensus_9188#1 ----CCAACACATGATCCTAAAATGAATATC-----ACTGTTCATTTAACATCATCAGAG 51
** ** * **** * ** ** ** * * ** ** *
consensus_9188#0 CAGTTAAAA-ATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCT 179
consensus_9188#1 TGTTTAGATTATTTGGATAGATTACAAGCTGGAAAACAGTCACAATCACCATTATTACAT 111
*** * ** * * * *** ** * * * * ** *** * * *
consensus_9188#0 GATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCG-AAAT 238
consensus_9188#1 CATAATCAAGCGGAGAATAAAGAATCAACGTCTAGTTTTAGTTCAGATGTTACCACAAAT 171
***** * *** * ** * ** ** * * * * * * * ****
consensus_9188#0 CCACTTTCTTCTTTTCCTACTAAAATTGCATTTATGATAAACACCTAGTGTTATGAATAA 298
consensus_9188#1 ATTACTACTACTGCTACTACTATAAGTACG-----GGTAG-----TAGTATTAAAAACAG 221
* ** ** * ****** ** * * * ** **** *** ** *
consensus_9188#0 CATTGAAATCTGCCGGTCACCTTTGAAATAGCATTCAGCATTATTATGTATTTATTTAGT 358
consensus_9188#1 TACTGCT-TCTGATATATGCAATAAGAATAGTATCTACAA--AGAAGATTTTGATCTAAT 278
* ** **** * * ***** ** * * * * * ** ** ** *
consensus_9188#0 ATTTATATACAGGGATACGTGCTATTGTGCAGTTCCACTTTTCCAAGTGCTTAACTAATT 418
consensus_9188#1 GAATG-----AAGAATCCATGAGAAT-TGAAGAGGCTACATTAGAAACACC-AGATATTG 331
* * * ** * ** * * ** ** * ** ** * * ** *
consensus_9188#0 ACATAAA--GTAA-AATGGGATAAATGAATATTAAGAATAAATCTCAGT-CAATGTTAGT 474
consensus_9188#1 AAATGAACGGTGACAATGATATCAATAATAATGAGGAAGATATTGAAGAACAGTATTA-- 389
* ** ** ** * **** ** *** * ** * *** * ** ** ** * ***
consensus_9188#0 TCCTGTGATTAATTAATTCTTCCAATCTTTTTTCTATGATAAAGCTCTTTTTTGTATTCT 534
consensus_9188#1 CAATATGACCGATTG--TAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACG 447
* *** *** * * *** ** * ** ** * ** ** * *
consensus_9188#0 GTT--TCACTGGATAACAAATCATTCATTTTTATACATACATGTGTGTTGGGTCGGTTTA 592
consensus_9188#1 AACAGTCAATAAGTG-TAAAGAAGACATTTTAAAGC---------TATTTCATCGAAATT 497
*** * * *** * ****** * * * ** *** *
consensus_9188#0 AACGAAAACGTAGACCTTATTCA-ACATTCCACTTGTATG-ATGAAAAATGTGACAGAGT 650
consensus_9188#1 TACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACAT 557
** *** ** * *** * * ****** ** ** * * ** *** *
consensus_9188#0 ACGTTACATTGAGGGCGAACTNTNTTGTTTCTACTTCTTATGTCTTTTCACATGNCAACA 710
consensus_9188#1 GCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAA----AACA 613
* * ** * * **** *** *** ** * * ****
consensus_9188#0 CGTTNTTTTACAAAGTTACTTTTTTGCTTTCACCTAATGAGTTGNAATTTGNCTTTTAAT 770
consensus_9188#1 CATCG------AAATCCACTTTCTTCT--------------------------------- 634
* * *** ***** **
consensus_9188#0 TNTNAATATTTATNGACAGNTACTTCTATCATTCCTTAAATGATATAATGNTATTACCCA 830
consensus_9188#1 ------------------------------------------------------------
consensus_9188#0 CACAGAAACCACTGATGGTACCGATATAAGCATTGNCTATCTAATNACATGTTTTACGCT 890
consensus_9188#1 ------------------------------------------------------------
consensus_9188#0 CAATATN 897
consensus_9188#1 -------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||