These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9194#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1120 fasta sequence [AATAGAGAATCAAAGAGACACTTGAGGAAAATAGGCGGAAGCCAGTGATTGTTGATGGTAGTTTTGATCATTAGTATAATAGACGGACTATAGGCACTTGGTTGATGATATCTTTTGATCAGAAATACTTCGTGATTTGCCATTGTGATCCGCAAATTCCATGGCCAATGTGTCAGGAATTTCGGGTGGGATAGAAGAACCCGAATAAGGATAACTAAGTGTATTTCTAACACGGATTAAGTCACAATTTTCTTTAGGGATCACACAGCTCGAAGTGGATACTGGCAGGTGAGTAGTAAGTATTGTAGACAGGGAAGTCGTGTTATCTATTGCAGAAGGAACATTTTTCACACACAAATTA-TTTTTTGAACTGTTGGGTAGTTCTATGAGCCTTTTGTCAACTGTTTGCAAGATGTTGGTATTTGAAGATGAAGACACCATGACAGATGTATGTGTGTCAAATAAAGGGACTACACGAGAAGCTTGGGAATGCTGCGTTAATGGGATATATGAAGGAGTAGTTTCGAATGCTGAGGGTTTCTCACTTCCAGAAGAGGTATCCGTAAGTGAATTAGGAGTAGTAAGAGGACAAATTACTCCAGAAGATACACTTATTACTGGAAACGCTGAAAGCTTCAAGCGATTNTGTACATAACCTGAATCGTTCTCGGCAATCTGGCGATTCAACCAAGCGATAATTGTTTCATTGGACTTGATTGTTTTCTGAGCATCTGCCAAACTTTTCAAGGTTTGATCATGCTCTTCAACAATCTGAGTGTTGCGGTTTTTGACATTCGTGATTTCTGATCTTAATTTATCTAGTTCGGTATGTAGTCTCTGAATTTCAGAGACTTTGGAAACAAGTAAACGCTCCTGTTCCGCTGCTACTTGACCACGTAACTTAGCCTAAGACAAATGAATACCTTTGTTTGGAAACTCTTGACTTCACTTTGTAAGCGTTTAATGATTTCATTGGATTTATTTATTTCTTCCGTATTCGAAGCTAAATGTTTCTCCAAATTTTGTATGCTACGACAGTGTTGTTCTGACTGTTCAAGTAACTGCAACTTTTGTTCATGTTCTTTGGTTAATGAATTCTCTAACTCCAGTATTTGTTTAC] [-] EMBL CD078877 [AATAGAGAATCAAAGAGACACTTGAGGAAAATAGGCGGAAGCCAGTGATTGTTGATGGTAGTTTTGATCATTAGTATAATAGACGGACTATAGGCACTTGGTTGATGATATCTTTTGATCAGAAATACTTCGTGATTTGCCATTGTGATCCGCAAATTCCATGGCCAATGTGTCAGGAATTTCGGGTGGGATAGAAGAACCCGAATAAGGATAACTAAGTGTATTTCTAACACGGATTAAGTCACAATTTTCTTTAGGGATCACACAGCTCGAAGTGGATACTGGCAGGTGAGTAGTAAGTATTGTAGACAGGGAAGTCGTGTTATCTATTGCAGAAGGAACATTTTTCACACACAAATTA TTTTTTGAACTGTTGGGTAGTTCTATGAGCCTTTTGTCAACTGTTTGCAAGATGTTGGTATTTGAAGATGAAGACACCATGACAGATGTATGTGTGTCAA ] [+] EMBL CD185753 [ GATGATATCTTTTGATCAGAAATACTTCGTGATTTGCCATTGTGATCCGCAAATTCCATGGCCAATGTGTCAGGAATTTCGGGTGGGATAGAAGAACCCGAATAAGGATAACTAAGTGTATTTCTAACACGGATTAAGTCACAATTTTCTTTAGGGATCACACAGCTCGAAGTGGATACTGGCAGGTGAGTAATAAGTATTGTAGACAGGGAAGTCGTGTTATCTATTGCAGAAGGAACATTTTTCACACACAAATTA TTTTTTGAACTGTTGGGTAGTTCTATGAGCCTTTTGTCAACTGTTTGCAAGATGTTGGTATTTGAAGATGAAGACACCATGACAGATGTATGTGTGTCAAATAAAGGGACTACACGAGAAGCTTGGGAATGCTGCGTTAATGGGATATATGAAGGAGTAGTTTCGAATGCTGAGGGTTTCTCACTTCCAGAAGAGGTATCCGTAAGTGAATTAGGAGTAGTAAGAGGACAAATTACTCCAGAAGATACACTTATTACTGGAAACGCTGAAAGCTTCAAGCGATTNTGTACATAACCTGAATCGTTCTCGGCAATCTGGCGATTCAAC ] [+] EMBL CD142045 [ GATGATATCTTTTGATCAGAAATACTTCGTGATTTGCCATTGTGATCCGCAAATTCCATGGCCAATGTGTCAGGAATTTCGGGTGGGATAGAAGAACCCGAATAAGGATAACTAAGTGTATTTCTAACACGGATTAAGTCACAATTTTCTTTAGGGATCACACAGCTCGAAGTGGATACTGGCAGGTGAGTAGTAAGTATTGTAGACAGGGAAGTCGTGTTATCTATTGCAGAAGGAACATTTTTCACACACAAATTATTTTTTTGAACTGTTGGGTAGTTCTATGAGCCTTTTGTCAACTGTTTGCAAGATGTTGGTATTTGAAGATGAAGACACCATGACAGATGTATGTGTGTCAAATA ] [-] EMBL CD178480 [ AATGCTGAGGGTTTCTCACTTCCAGAAGAGGTATCCGTAAGTGAATTAGGAGTAGTAAGAGGACAAATTACTCCAGAAGATACACTTATTACTGGAAACGCTGAAAGCTTCAAGCGATTTTGTACATAACCTGAATCGTTCTCGGCAATCTGGCGATTCAACCAAGCGATAATTGTTTCATTGGACTTGATTGTTTTCTGAGCATCTGCCAAACTTTTCAAGGTTTGATCATGCTCTTCAACAATCTGAGTGTTGCGGTTTTTGACATTCGTGATTTCTGATCTTAATTTATCTAGTTCGGTATGTAGTCTCTGAATTTCAGAGACTTTGGAAACAAGTAAACGCTCCTGTTCCGCTGCTACTTGACCACGTAACTTAGCCTAAGACAAATGAATACCTTTGTTTGGAAACTCTTGACTTCACTTTGTAAGCGTTTAATGATTTCATTGGATTTATTTATTTCTTCCGTATTCGAAGCTAAATGTTTCTCCAAATTTTGTATGCTACGACAGTGTTGTTCTGACTGTTCAAGTAACTGCAACTTTTGTTCATGTTCTTTGGTTAATGAATTCTCTAACTCCAGTATTTGTTTAC] consensusID : consensus_9194#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [CTTAGTTTTAAAGTAGACTGGAGTTTTCATTCTGAGCATTATTATGAGTAATAGCTACGTTATGGTTATCACATTAGTGCAGTGACGTTTTTGTTTCATGTGGTTTTAACGATGTCGGACATCTTTTTAGGTAAATTATCTGATGGCTTACAAAGGCCTTACGTTCAGTCAGACCTGTTCCCACTCAACCACAATCAACTGGTGTTTTCTTCCGACCCACGCTACGACTTAGTATACACTATTTTGTTTATCTCAATTCATTACTTCGACCTCCGTAAAGCTTATACGAAGGACTCTTCAAAGTGCTTCATCGCAAACCTAGATACTATATCATCGATAAGAAAGGAACTTACGATGACGTCAACATTGACGGTCTTAAAGTTGCCTGTTTAGAATGAAACCCTGATAGCGTTGATTTTCCTCCGGTACAATTGAAAGACACGGGGCTCACAACTACGGAACCTCACCCGATAATCATCAATCACAAAGAAACTTTGCTGGTATCTGACAACTGGTCCAGAACAACGCACTCTGCAGCAAGGTTGAGATTTCCAGAACACTCAAAAGTCCACTGAATATAGGACACCGCATAATATTTTGTTTTATCTCGTTTGTTCGCATCTTTGTGTCGTAAAGAGAAATAAACGTTTTGCCACTATGCT] [+] EMBL CD080593 [CTTAGTTTTAAAGTAGACTGGAGTTTTCATTCTGAGCATTATTATGAGTAATAGCTACGTTATGGTTATCACATTAGTGCAGTGACGTTTTTGTTTCATGTGGTTTTAACGATGTCGGACATCTTTTTAGGTAAATTATCTGATGGCTTACAAAGGCCTTACGTTCAGTCAGACCTGTTCCCACTCAACCACAATCAACTGGTGTTTTCTTCCGACCCACGCTACGACTTAGTATACACTATTTTGTTTATCTCAATTCATTACTTCGACCTCCGTAAAGCTTATACGAAGGACTCTTCAAAGTGCTTCATCGCAAACCTAGATACTATATCATCGATAAGAAAGGAACTTACGATGACGTCAACATTGACGGTCTTAAAGTTGCCTGTTTAGAATGAAACCCTGATAGCGTTGATTTTCCTCCGGTACAATTGAAAGACACGGGGCTCACAACTACGGAACCTCACCCGATAATCATCAATCACAAAGAAACTTTGCTGGTATCTGACAACTGGTCCAGAACAACGCACTCTGCAGCAAGGTTGAGATTTCCAGAACACTCAAAAGTCCACTGAATATAGGACACCGCATAATATTTTGTTTTATCTCGTTTGTTCGCATCTTTGTGTCGTAAAGAGAAATAAACGTTTTGCCACTATGCT] consensusID : consensus_9194#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [GAAGAAAACACCAGTTGATTGTGATTGAGTGGGAACAGGTCTGACTGAACGTAAGGCCTTTGTAAGCCATCAGATAATTTACTGAATGGTAAGTAACATATTCATCAGCTGTAAAAATGTGAAACAAGCTACCAATCTTATTTCACTTGAAGGTTGAATGATTACAAATAGAAAATCAAAGAGACACTTGAGGAAAATAGGCGGAAGCCAGTGATTGTTGATGGTAGTTTTGATCATTAGTATAATCGACGGACTCTAGGCACTTGGTTGATGATATCTTTTGATCAGAAATACTTCGTGATTTGCCATTGTGATCCGCAAATTCCATGGCCAATGTGTCAGGAATTTCGGGTGGGATAGAAGAACCCGAATAAGGATAACTAAGTGTATTTCTAACACGGATTAAGTCACAATTTTCTTTAGGGATCACACAGCTCGAAGTGGATACTGGCAGGTGAGTAGTAAGTATGTAGACAGGGAAGTCGTGTATCTCCTCGTGCCGATTCTGCCTCGAGGC] [-] EMBL CD083673 [GAAGAAAACACCAGTTGATTGTGATTGAGTGGGAACAGGTCTGACTGAACGTAAGGCCTTTGTAAGCCATCAGATAATTTACTGAATGGTAAGTAACATATTCATCAGCTGTAAAAATGTGAAACAAGCTACCAATCTTATTTCACTTGAAGGTTGAATGATTACAAATAGAAAATCAAAGAGACACTTGAGGAAAATAGGCGGAAGCCAGTGATTGTTGATGGTAGTTTTGATCATTAGTATAATCGACGGACTCTAGGCACTTGGTTGATGATATCTTTTGATCAGAAATACTTCGTGATTTGCCATTGTGATCCGCAAATTCCATGGCCAATGTGTCAGGAATTTCGGGTGGGATAGAAGAACCCGAATAAGGATAACTAAGTGTATTTCTAACACGGATTAAGTCACAATTTTCTTTAGGGATCACACAGCTCGAAGTGGATACTGGCAGGTGAGTAGTAAGTATGTAGACAGGGAAGTCGTGTATCTCCTCGTGCCGATTCTGCCTCGAGGC] consensusID : consensus_9194#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 464 fasta sequence [ATGCTGAGGGTTTCTCACTTCCAGAAGAGGTATCCGTAAGTGAATTAGGAGTAGTAAGAGGACAAATTACTCCAGAAGATACACTTATTACTGGAAACGCTGAAAGCTTCAAGCGATTTTGTACATAACCTGAATCGTTCTCGGCAATCTGGCGATTCAACCAAGCGATAATTGTTTCATTGGACTTGATTGTTTTCTGAGCATCTGCCAAACTTTTCAAGGTTTGATCATGCTCTTCAACAATCTGAGTGTTGCGGTTTTTGACATTCGTGATTTCTGATCTTAATTTATCTAGTTCGGTATGTAGTCTCTGAATTTCAGAGACTTTGGAAACAAGTAAACGCTCCTGTTCCGCTGCTACTTGACCACGTAACTTAGCCTTTGTTTGGAAACTCTTGACTTCACTTTGTAAGCGTTTAATGATTTCATGGATTTATTTATTTCTTCCGTATTCGCCTCGTGCC] [-] EMBL CD084132 [ATGCTGAGGGTTTCTCACTTCCAGAAGAGGTATCCGTAAGTGAATTAGGAGTAGTAAGAGGACAAATTACTCCAGAAGATACACTTATTACTGGAAACGCTGAAAGCTTCAAGCGATTTTGTACATAACCTGAATCGTTCTCGGCAATCTGGCGATTCAACCAAGCGATAATTGTTTCATTGGACTTGATTGTTTTCTGAGCATCTGCCAAACTTTTCAAGGTTTGATCATGCTCTTCAACAATCTGAGTGTTGCGGTTTTTGACATTCGTGATTTCTGATCTTAATTTATCTAGTTCGGTATGTAGTCTCTGAATTTCAGAGACTTTGGAAACAAGTAAACGCTCCTGTTCCGCTGCTACTTGACCACGTAACTTAGCCTTTGTTTGGAAACTCTTGACTTCACTTTGTAAGCGTTTAATGATTTCATGGATTTATTTATTTCTTCCGTATTCGCCTCGTGCC] [-] EMBL CD182641 [ TGCTGAGGTNTTCTCACTTCCAGAAGAGGTATCCGTAAGTGAATTAGGAGTAGTAAGAGGACAAATTACTCCAGAAGATACACTTATTACTGGAAACGCTGAAAGCTTCAAGCGATTTTGTACATAACCTGAATCGTTCTCGGCAATCTGGCGATTCAACCAAGCGATAATTGTTTCATTGGACTTGATTGTTTTCTGAGCATCTGCCAAACTTTTCAAGGTTTGATCATGCTCTTCAACAATCTGAGTGTTGCGGTTTTTGACATTCGTGATTTCTGATCTTAATTTATCTAGTTCGGTATGTAGTCTCTGAATTTCAGAGACTTTGGAAAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9194#0 AATAGAGAATCAAAGAGACACTTGAGGAAAATAGGCGGAAGCCAGTGATTGTTGATGGTA 60 consensus_9194#3 ------------------------------------------------------------ consensus_9194#2 ------------------------------------------------------------ consensus_9194#1 ------------------------------------------------------------ consensus_9194#0 GTTTTGATCATTAGTATAATAGACGGACTATAGGCACTTGGTTGATGATATCTTTTGATC 120 consensus_9194#3 ------------------------------------------------------------ consensus_9194#2 ------------------------------------------------------------ consensus_9194#1 ------------------------------------------------------------ consensus_9194#0 AGAAATACTTCGTGATTTGCCATTGTGATCCGCAAATTCCATGGCCAATGTGTCAGGAAT 180 consensus_9194#3 ------------------------------------------------------------ consensus_9194#2 ------------------------------------------------------------ consensus_9194#1 ------------------------------------------------------------ consensus_9194#0 TTCGGGTGGGATAGAAGAACCCGAATAAGGATAACTAAGTGTATTTCTAACACGGATTAA 240 consensus_9194#3 ------------------------------------------------------------ consensus_9194#2 ------------------------------------------------------------ consensus_9194#1 ------------------------------------------------------------ consensus_9194#0 GTCACAATTTTCTTTAGGGATCACACAGCTCGAAGTGGATACTGGCAGGTGAGTAGTAAG 300 consensus_9194#3 ------------------------------------------------------------ consensus_9194#2 ------------------------------------------------------------ consensus_9194#1 ------------------------------------------------------------ consensus_9194#0 TATTGTAGACAGGGAAGTCGTGTTATCTATTGCAGAAGGAACATTTTTCACACACAAATT 360 consensus_9194#3 ------------------------------------------------------------ consensus_9194#2 ------------------------------------------------------------ consensus_9194#1 ------------------------------------------------------------ consensus_9194#0 ATTTTTTGAACTGTTGGGTAGTTCTATGAGCCTTTTGTCAACTGTTTGCAAGATGTTGGT 420 consensus_9194#3 ------------------------------------------------------------ consensus_9194#2 ------------------------------------------------------------ consensus_9194#1 ------------------------------------------------------------ consensus_9194#0 ATTTGAAGATGAAGACACCATGACAGATGTATGTGTGTCAAATAAAGGGACTACACGAGA 480 consensus_9194#3 ------------------------------------------------------------ consensus_9194#2 ------------------------------------------------------------ consensus_9194#1 -------------CTTAGTTTTAAAGTAGACTGGAGTTTTCATTCTGAGCATTATTATGA 47 consensus_9194#0 AGCTTGGGAATGCTGCGTTAATGGGATATATGAAGGAGTAGTTTCGAATGCTGAGGGTTT 540 consensus_9194#3 -----------------------------------------------ATGCTGAGGGTTT 13 consensus_9194#2 ------------------------------------GAAGAAAACACCAGTTGATTGTGA 24 consensus_9194#1 GTAATAGCTACGTTATGGTTATCACATTAGTGCAGTGACGTTTTTGT---TTCATGTGGT 104 * * consensus_9194#0 CTCACTTCCAGAAGAGGTATCCGTAAGTGAATTAGGAGTA-GTAAGAGGACAAATTACTC 599 consensus_9194#3 CTCACTTCCAGAAGAGGTATCCGTAAGTGAATTAGGAGTA-GTAAGAGGACAAATTACTC 72 consensus_9194#2 TTGAGTGGGAACAGGTCTGACTGAACGTAAGGCCTTTGTAAGCCATCAGATAATTTACTG 84 consensus_9194#1 TTTAACGATGTCGGACATCTTTTTAGGTAAATTATCTGATGGCTTACAAAGGCCTTACGT 164 * * * * * ** * * * * **** consensus_9194#0 -----CAGAAGATACACTTATTA-CTGGAAACGC-TGAAAGCTTCAAGCGATTNTGTACA 652 consensus_9194#3 -----CAGAAGATACACTTATTA-CTGGAAACGC-TGAAAGCTTCAAGCGATTTTGTACA 125 consensus_9194#2 AATGGTAAGTAACATATTCATCAGCTGTAAAAATGTGAAACAAGCTACCAATCTTAT--T 142 consensus_9194#1 TCAGTCAGACCTGTTCCCACTCAACCACAATCAACTGGTGTTTTCTTCCGACCCACGCTA 224 * * * * ** ** * * * consensus_9194#0 TAACCTGAATCGTTCTCGGCAATC--TGGCGATTCAACCAAGCGAT--AATTGTTTCATT 708 consensus_9194#3 TAACCTGAATCGTTCTCGGCAATC--TGGCGATTCAACCAAGCGAT--AATTGTTTCATT 181 consensus_9194#2 TCACTTGAAGGTTGAATGATTACAAATAGAAAATCAAAGAGACACTTGAGGAAAATAGGC 202 consensus_9194#1 CGACTTAGTATACACTATTTTGTTTATCTCAATTCATTACTTCGAC---CTCCGTAAAGC 281 ** * * * *** * consensus_9194#0 GGACTTGATTGTTTTCTGAGCATCTGCCAAACTTTTCAAGGTTTGATC-ATGCTCTTCAA 767 consensus_9194#3 GGACTTGATTGTTTTCTGAGCATCTGCCAAACTTTTCAAGGTTTGATC-ATGCTCTTCAA 240 consensus_9194#2 GGAAGCCAGTGATTGTTGATGGTAGTTTTGATCATT---AGTATAATCGACGGACTCTAG 259 consensus_9194#1 TTATACGAAGGACTCTTCAAAGTGCTTCATCGCAAACCTAG-ATACTATATCATCGATAA 340 * * * * * * * * * * * * * consensus_9194#0 CAATCTGAGTGTTGCGGTTTTT------GACAT---TCGTGATTTCTGATCTTAATTTAT 818 consensus_9194#3 CAATCTGAGTGTTGCGGTTTTT------GACAT---TCGTGATTTCTGATCTTAATTTAT 291 consensus_9194#2 GCACTTGGTTGATGATATCTTTTGATCAGAAATACTTCGTGATTTGCCATTGTGATCCG- 318 consensus_9194#1 GAAAGGAACTTACGATGACGTCAACATTGACGGTC-TTAAAGTTGCCTGTTTAGAATGA- 398 * * * * ** * ** * * consensus_9194#0 CTAGTTCGGTATGTAGTCTCT---GAATTTCAGAGACTTTGGAAACAAGTAAACGCTCCT 875 consensus_9194#3 CTAGTTCGGTATGTAGTCTCT---GAATTTCAGAGACTTTGGAAACAAGTAAACGCTCCT 348 consensus_9194#2 CAAATTCCATGGCCAATGTGTCAGGAATTTCGGGTGGGATAGAAGAACCCGAATAAGGAT 378 consensus_9194#1 -AACCCTGATAGCGTTGATTT-----TCCTCCGGTACAATTGAAAGACACGGG-GCTCAC 451 * * * * ** * * *** * consensus_9194#0 GTTCCGCTGCTACTTGACCACGTAAC--TTAGCCTAAGACAAATGAATACCTTTGTTTGG 933 consensus_9194#3 GTTCCGCTGCTACTTGACCACGTAAC--TTAGCCT-----------------TTGTTTGG 389 consensus_9194#2 AACTAAGTGTATTTCTAACACG-GAT--TAAGTCACA-----------ATTTTCTTTAGG 424 consensus_9194#1 AACTA--CGGAACCTCACCCGATAATCATCAATCACA--------AAGAAACTTTGCTGG 501 * * * * * * * * ** consensus_9194#0 AAACTCTTGACTTCACTTTGTAAGCGTTTAATG-ATTTCATTGGATTTATTTATTTCTTC 992 consensus_9194#3 AAACTCTTGACTTCACTTTGTAAGCGTTTAATG-ATTTCAT-GGATTTATTTATTTCTTC 447 consensus_9194#2 GATCACACAGCTCGAAGTGGATACTGGCAGGTG-AGTAGTAAGTATGTAGACAGGGAAGT 483 consensus_9194#1 TATCTGACAACTGGTCCAGAACAACGCACTCTGCAGCAAGGTTGAGATTTCCAGAACACT 561 * * ** * * ** * * * * consensus_9194#0 CGTATTCGAAGCTAAATGTTTCTCCAAATTTTGTATGCTACGACAGTGTTGTTCTGACTG 1052 consensus_9194#3 CGTATTCG---CCTCGTGCC---------------------------------------- 464 consensus_9194#2 CGTGTATCT--CCTCGTGCCGATTCTGCCTCGAGGC------------------------ 517 consensus_9194#1 CAAAAGTCCA-CTGAATATAGGACACCGCATAATATTTTGTTTTATCTCGTTTGTTCGCA 620 * * * consensus_9194#0 TTCAAGTAACTGCAACTTTTGTTCATGTTCTTTGGTTAATGAATTCTCTAACTCCAGTAT 1112 consensus_9194#3 ------------------------------------------------------------ consensus_9194#2 ------------------------------------------------------------ consensus_9194#1 TCTTTGTGTCGTAAAGAGAAATAAACGTTTTGCCACTATGCT------------------ 662 consensus_9194#0 TTGTTTAC 1120 consensus_9194#3 -------- consensus_9194#2 -------- consensus_9194#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||