These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9199#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 879 fasta sequence [CTGCAGGTTTGGGACAAAAAGGTTCGTAACGGTCATATCAAAAGAATTACAGATAATGAAATCCAGTCATTGGTCTTGGAATTATTAGGAAGCAATGTTTCGTATGGTTCATCTTGTGTAGTCCTTATATAGTTGATGTAGAAACACTTATATATCTTGTCCTGCAGATCCTAGAAAAGCACTGGGCATTAAATTACCTTTCCTAGTGTTAATTGTAAAAAATCTCAATAAGTACTTTACGTTTGAAATTCAGATCCTTGATGACGAGGGTGTTAAGAGACGTTTTAGGGCCAGTAACTACCAGAGCACTACTCGAGTAAAGCCATTTATTTGCACCATGCCTCTCCGTTTGGAAGCCAACTGGAATAACATTTACTTCAACGTTGCAGACTTTACAAAGCGTGCATACGGGACTAATTTCGTCGAGGTGCTGCGAGTTCAGATTCACGCTAATTGTCGAATAAGACGTATATATTTTTGTGACCGCCTCTATTCGGAGGAAGAGCTCCCTGCAGAGTTCAAATTATACCTCCCTGTTCAAGTAAACCGGAACACATAGGTATTTTCATTGCAAATGTTTCCCTGTTTCAATGACACTTTTAACACTTTTCAAACTATCATGTATATGTTTCAGTTTGGTGCATAATATGTATTTTGTGTTATCCATTACCCCGAATATTTCTACTTTATAATAAAATAATTCGTGAGAATTTTCTAATACCAGTTATTTGTTAAATTTCATGTTCATTTATGTTAATCTTCTTGGTTAACGTTCTTCAGTGTGTTGAAACTACTGCTGAATTACACATTGTTTTCTCAGTTGCATCATAATTTTACTGGGTTAACGTCATGTTGTAACTATCATGCTTAAAATGTTTG] [+] EMBL CD191778 [CTGCAGGTTTGGGACAAAAAGGTTCGTAACGGTCATATCAAAAGAATTACAGATAATGAAATCCAGTCATTGGTCTTGGAATTATTAGGAAGCAATGTTTCGTATGGTTCATCTTGTGTAGTCCTTATATAGTTGATGTAGAAACACTTATATATCTTGTCCTGCAGATCCTAGAAAAGCACTGGGCATTAAATTACCTTTCCTAGTGTTAATTGTAAAAAATCTCAATAAGTACTTTACGTTTGAAATTCAGATCCTTGATGACGAGGGTGTTAAGAGACGTTTTAGGGCCAGTAACTACCAGAGCACTACTCGAGTAAAGCCATTTATTTGCACCATGCCTCTCCGTTTGGAAGCCAACTGGAATAA ] [-] EMBL CD076600 [ GTAAAGCCATTTATTTGCACCATGCCTCTCCGTTTGGAAGCCAACTGGAATAACATTTACTTCAACGTTGCAGACTTTACAAAGCGTGCATACGGGACTAATTTCGTCGAGGTGCTGCGAGTTCAGATTCACGCTAATTGTCGAATAAGACGTATATATTTTTGTGACCGCCTCTATTCGGAGGAAGAGCTCCCTGCAGAGTTCAAATTATACCTCCCTGTTCAAGTAAACCGGAACACATAGGTATTTTCATTGCAAATGTTTCCCTGTTTCAATGACACTTTTAACACTTTTCAAACTATCATGTATATGTTTCAGTTTGGTGCATAATATGTATTTTGTGTTATCCATTACCCCGAATATTTCTACTTTATAATAAAATAATTCGTGAGAATTTTCTAATACCAGTTATTTGTTAAATTTCATGTTCATTTATGTTAATCTTCTTGGTTAACGTTCTTCAGTGTGTTGAAACTACTGCTGAATTACACATTGTTTTCTCAGTTGCATCATAATTTTACTGGGTTAACGTCATGTTGTAACTATCATGCTTAAAATGTTTG] [-] EMBL CD075749 [ CCGTTTGGAAGCCAACTGGAATAACATTTACTTCAACGTTGCAGACTTTACAAAGCGTGCATACGGGACTAATTTCGTCGAGGTGCTGCGAGTTCAGATTCACGCTAATTGTCGAATAAGACGTATATATTTTTGTGACCGCCTCTATTCGGAGGAAGAGCTCCCTGCAGAGTTCAAATTATACCTCCCTGTTCAAGTAAACCGGAACACATAGGTATTTTCATTGCAAATGTTTCCCTGTTTCAATGACACTTTTAACACTTTTCAAACTATCATGTATATGTTTCAGTTTGGTGCATAATATGTATTTTGTGTTATCCATTACCCCGAATATTTCTACTTTATAATAAAATAATTCGTGAGAATTTTCTAATACCAGTTATTTGTTAAATTTCATGTTCATTTATGTTAATCTTCTTGGTTAACGTTCTTCAGTGTGTTGAAACTACTGCTGAATTACACATTGTTTTCTCAGTTGCATCATAATTTTACTGGGTTAACGTCATGTTGTAACTATCATGCTTAAAATGTTTG] consensusID : consensus_9199#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 877 fasta sequence [TTAACTGTACGCTACACAAATGTTCAGGAATACATTCCAGAGTGGGTTTTTATCTATACTATTCAGTGTTGGGACAAAACCTCTGCAGATTTGGGACAAAAAGGTTCGTAACGGTCATATCAAAAGAATTACAGATAATGAAATCCAGTCATTGGTCTTGGAATTATTAGGAAGCAATGTTTCAAACACTTATATATCTTGTCCTGCAGATCCTAGAAAAGCACTGGGCATTAAATTACCTTTCCTAGTGTTAATTGTAAAAAATCTCAATAAGTACTTTACGTTTGAAATTCAGATCCTTGATGACGAGGGTGTTAAGAGACGTTTTAGGGCCAGTAACTACCAGAGCACTACTCGAGTAAAGCCATTTATTTGCACCATGCCTCTCCGTTTGGAAGCCAACTGGAATAACATTTACTTCAACGTTGCAGACTTTACAAAGCGTGCATACGGGACTAATTTCGTCGAGGTGCTGCGAGTTCAGATTCACGCTAATTGTCGAATAAGACGTATATATTTTTGTGACCGCCTCTATTCGGAGGAAGAGCTCCCTGCAGAGTTCAAATTATACCTCCCTGTTCAAGTAAACCGGAACACATAGGTATTTTCATTGCAAATGTTTCCCTGTTTCAATGACACTTTTAACACTNTTCAAACTATCATGTATATGTTTCAGTTTGGTGCATAATATGTATTNTGTGTTATCCATTACACCGAATATTTCTACTTTATAATAAAAATAATCGTGAGAATTTTCTAATCCAGNTNNATTGTAAATTTCATGTCATTATGTAAATCTCTGGNTAACGTCTCATGTGTGAACTACGTGATACACATGTTTCAGTGCATATATTCTGGTACGCAGTGACTTAGCTAA] [+] EMBL CD083015 [TTAACTGTACGCTACACAAATGTTCAGGAATACATTCCAGAGTGGGTTTTTATCTATACTATTCAGTGTTGGGACAAAACCTCTGCAGATTTGGGACAAAAAGGTTCGTAACGGTCATATCAAAAGAATTACAGATAATGAAATCCAGTCATTGGTCTTGGAATTATTAGGAAGCAATGTTTCAAACACTTATATATCTTGTCCTGCAGATCCTAGAAAAGCACTGGGCATTAAATTACCTTTCCTAGTGTTAATTGTAAAAAATCTCAATAAGTACTTTACGTTTGAAATTCAGATCCTTGATGACGAGGGTGTTAAGAGACGTTTTAGGGCCAGTAACTACCAGAGCACTACTCGAGTAAAGCCATTTATTTGCACCATGCCTCTCCGTTTGGAAGCCAACTGGAATAACATTTACTTCAACGTTGCAGACTTTACAAAGCGTGCATACGGGACTAATTTCGTCGAGGTGCTGCGAGTTCAGATTCACGCTAATTGTCGAATAAGACGTATATATTTTTGTGACCGCCTCTATTCGGAGGAAGAGCTCCCTGC ] [+] EMBL CD082134 [ ctaaACATTCCAGAGTGGGTTTTTATCTA ACTTTTCAGTGTTGGGACACAACCTCTGCAGATTTGGGACAAAAAGGTTCGTAACGGTCATATCAAAAGAATTACAGATAATGAAATCCAGTCATTGGTCTTGGAATTATTAGGAAGCAATGTTTCAAACACTTATATATCTTGTCCTGCAGATCCTAGAAAAGCACTGGGCATTAAATTACCTTTCCTAGTGTTAATTGTAAAAAATCTCAATAAGTACTTTACGTTTGAAATTCAGATCCTTGATGACGAGGGTGTTAAGAGACGTTTTAGGGCCAGTAACTACCAGAGCACTACTCGAGTAAAGCCATTTATTTGCACCATGCCTCTCCGTTTGGAAGCCAACTGGAATAACATTTACTTCAACGTTGCAGACTTTACAAAGCGTGCATACGGGACTAATTTCGTCGAGGTGCTGCGAGTTCAGATTCACGCTAATTGTCGAATAAGACGTATATATTTTTGTGACCGCCTCTATTCGGAGGAAGAGCTCCCTGCAGAGTTCAAATTATACCTCCCTGTTCAAGTAAACCGGAACACATAGGTATTTTCATTGCAAATGTTTCCCTGTTTCAATGACACTTTTAACACTNTTCAAACTATCATGTATATGTTTCAGTTTGGTGCATAATATGTATTNTGTGTTATCCATTACACCGAATATTTCTACTTTATAATAAAAATAATCGTGAGAATTTTCTAATCCAGNTNNATTGTAAATTTCATGTCATTATGTAAATCTCTGGNTAACGTCTCATGTGTGAACTACGTGATACACATGTTTCAGTGCATATATTCTGGTACGCAGTGACTTAGCTAA] [+] EMBL CD115093 [ CCAGAGTGGGTTTGGATGTATACTATTCAGTGTTGGGACAAAACCTCTGCAGATTTGGGACAAAAAGGTTCGTAACGGTCATATCAAAAGAATTACAGATAATGAAATCC ] consensusID : consensus_9199#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence [GCACCATGCCTCTCCGTTTGGAAGCCAACTGGAATAACATTTACTTCAACGTTGCAGACTTTACAAAGCGTGCATACGGGACTAATTTCGTCGAGGTGCTGCGAGTTCAGGTTTGTAATGACCATTAAAATAAGATCTAATTTCAAGCATGTTGCCAGATGCATTTTCATATGATTTTAGAATGAAATTACTTGTTATTAAGGAATTAGATTCCCTCTAAAGTGGTTTTATCAGCACTTGTTATGTTACGCGATGTCACGGAAAGTGGTAAGTATTAGGCTTACGATGCTTAAAACACGAAAAATATGAGGGAAAATGAAGAGATGTGTGTGGATACTTACATAACCGCATCTAAATGCAAGTTAATGTATAGGAATATAATGCAGTAATTTCAGTGGGTTATTATTTGCAAGTTGGTTACTTCCGAAAAATCGTTAACGATGTGTAAATTAATGCGCATAAACCACATTAGATATAAACAATCCAGTTAGAATGTCGGGAGCGTGTTCTCCTGATGATTCACCACTTATTGATTATGTGCTGTGTGTATGACTCCA] [-] EMBL CD090094 [GCACCATGCCTCTCCGTTTGGAAGCCAACTGGAATAACATTTACTTCAACGTTGCAGACTTTACAAAGCGTGCATACGGGACTAATTTCGTCGAGGTGCTGCGAGTTCAGGTTTGTAATGACCATTAAAATAAGATCTAATTTCAAGCATGTTGCCAGATGCATTTTCATATGATTTTAGAATGAAATTACTTGTTATTAAGGAATTAGATTCCCTCTAAAGTGGTTTTATCAGCACTTGTTATGTTACGCGATGTCACGGAAAGTGGTAAGTATTAGGCTTACGATGCTTAAAACACGAAAAATATGAGGGAAAATGAAGAGATGTGTGTGGATACTTACATAACCGCATCTAAATGCAAGTTAATGTATAGGAATATAATGCAGTAATTTCAGTGGGTTATTATTTGCAAGTTGGTTACTTCCGAAAAATCGTTAACGATGTGTAAATTAATGCGCATAAACCACATTAGATATAAACAATCCAGTTAGAATGTCGGGAGCGTGTTCTCCTGATGATTCACCACTTATTGATTATGTGCTGTGTGTATGACTCCA] consensusID : consensus_9199#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence [CTCCTTTATTGAAGCATTAACACTTACTATTAATTTCTAACTGTTGACTAGATGCAATAGCCATTGCAATTGAGAATAAAAAAAATATCTTAACTAGTATGCTTATAATAAGTTTTCAAGTCTTAAAAATAGTTTTGTATGAGGTTGTATACTTTGTAGCACCAAAAGATATATCAATGACTATTAGAGCGAAATTGTTACTTTAAAAACATCGCTTTTCGAAACCTATTTTCAGATTCACGCTAATTGTCGAATAAGACGTATATATTTTTGTGACCGCCTCTATTCGGA] [+] EMBL CD188486 [CTCCTTTATTGAAGCATTAACACTTACTATTAATTTCTAACTGTTGACTAGATGCAATAGCCATTGCAATTGAGAATAAAAAAAATATCTTAACTAGTATGCTTATAATAAGTTTTCAAGTCTTAAAAATAGTTTTGTATGAGGTTGTATACTTTGTAGCACCAAAAGATATATCAATGACTATTAGAGCGAAATTGTTACTTTAAAAACATCGCTTTTCGAAACCTATTTTCAGATTCACGCTAATTGTCGAATAAGACGTATATATTTTTGTGACCGCCTCTATTCGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9199#0 ------------------------------------------------------------ consensus_9199#1 TTAACTGTACGCTACACAAATGTTCAGGAATACATTCCAGAGTGGGTTTTTATCTATACT 60 consensus_9199#2 ------------------------------------------------------------ consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 ----------------------CTGCAGGTTTGGGACAAAAAGGTTCGTAACGGTCATAT 38 consensus_9199#1 ATTCAGTGTTGGGACAAAACCTCTGCAGATTTGGGACAAAAAGGTTCGTAACGGTCATAT 120 consensus_9199#2 ------------------------------------------------------------ consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 CAAAAGAATTACAGATAATGAAATCCAGTCATTGGTCTTGGAATTATTAGGAAGCAATGT 98 consensus_9199#1 CAAAAGAATTACAGATAATGAAATCCAGTCATTGGTCTTGGAATTATTAGGAAGCAATGT 180 consensus_9199#2 ------------------------------------------------------------ consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 TTCGTATGGTTCATCTTGTGTAGTCCTTATATAGTTGATGTAGAAACACTTATATATCTT 158 consensus_9199#1 TTC----------------------------------------AAACACTTATATATCTT 200 consensus_9199#2 ------------------------------------------------------------ consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 GTCCTGCAGATCCTAGAAAAGCACTGGGCATTAAATTACCTTTCCTAGTGTTAATTGTAA 218 consensus_9199#1 GTCCTGCAGATCCTAGAAAAGCACTGGGCATTAAATTACCTTTCCTAGTGTTAATTGTAA 260 consensus_9199#2 ------------------------------------------------------------ consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 AAAATCTCAATAAGTACTTTACGTTTGAAATTCAGATCCTTGATGACGAGGGTGTTAAGA 278 consensus_9199#1 AAAATCTCAATAAGTACTTTACGTTTGAAATTCAGATCCTTGATGACGAGGGTGTTAAGA 320 consensus_9199#2 ------------------------------------------------------------ consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 GACGTTTTAGGGCCAGTAACTACCAGAGCACTACTCGAGTAAAGCCATTTATTTGCACCA 338 consensus_9199#1 GACGTTTTAGGGCCAGTAACTACCAGAGCACTACTCGAGTAAAGCCATTTATTTGCACCA 380 consensus_9199#2 ------------------------------------------------------GCACCA 6 consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 TGCCTCTCCGTTTGGAAGCCAACTGGAATAACATTTACTTCAACGTTGCAGACTTTACAA 398 consensus_9199#1 TGCCTCTCCGTTTGGAAGCCAACTGGAATAACATTTACTTCAACGTTGCAGACTTTACAA 440 consensus_9199#2 TGCCTCTCCGTTTGGAAGCCAACTGGAATAACATTTACTTCAACGTTGCAGACTTTACAA 66 consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 AGCGTGCATACGGGACTAATTTCGTCGAGGTGCTGCGAGTTCAGATTCACGCTAATTGTC 458 consensus_9199#1 AGCGTGCATACGGGACTAATTTCGTCGAGGTGCTGCGAGTTCAGATTCACGCTAATTGTC 500 consensus_9199#2 AGCGTGCATACGGGACTAATTTCGTCGAGGTGCTGCGAGTTCAGGTTTGTAATGACCATT 126 consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 GAATAAGACGTATATATTTTTGTGACCGCCTCTATTCGGAGGAAGAGCTCCCTGCAGAGT 518 consensus_9199#1 GAATAAGACGTATATATTTTTGTGACCGCCTCTATTCGGAGGAAGAGCTCCCTGCAGAGT 560 consensus_9199#2 AAAATAAG---ATCTAATTTCAAGCATGTTGCCAGATGCATTTTCATATGATTTTAGAAT 183 consensus_9199#3 -----------------CTCCTTTATTGAAGC-ATTAACACTTACTATTAATTTCTAACT 42 * * * * * * * * * consensus_9199#0 TCAAATTATACCTCCCTGTTCAAGTAAACCGGAAC-ACATAGGTATTTTCATTGCAA--- 574 consensus_9199#1 TCAAATTATACCTCCCTGTTCAAGTAAACCGGAAC-ACATAGGTATTTTCATTGCAA--- 616 consensus_9199#2 G-AAATTACTTGTTATTAAGGAATTAGATTCCCTCTAAAGTGGTTTTATCAGCACTTGTT 242 consensus_9199#3 GTTGACTAGATGCAATAGCCATTGCAATTGAGAATAAAAAAAATATCTTAACTAGTA--- 99 * ** * * * * * * * consensus_9199#0 ATGTTTCCCTGTTTCAATGACACTTTTAACACTTTTCAAACTATCATGTATATGTTTC-- 632 consensus_9199#1 ATGTTTCCCTGTTTCAATGACACTTTTAACACTNTTCAAACTATCATGTATATGTTTC-- 674 consensus_9199#2 ATGTTACGCGATGTCACGGAAAGTGGTAA--GTATTAGGCTTACGATGCTTAAAACACGA 300 consensus_9199#3 -TGCTT---------ATAATAAGTTTTCAAGTCTTAAAAATAGTTTTGTATGAGGTTG-- 147 ** * * * * * * * ** * consensus_9199#0 --AGTTTGGTGCATAAT-ATGTATTTTGT-GTTATCCATTACCCCGAATATTTCTACTTT 688 consensus_9199#1 --AGTTTGGTGCATAAT-ATGTATTNTGT-GTTATCCATTACACCGAATATTTCTACTTT 730 consensus_9199#2 AAAATATGAGGGAAAATGAAGAGATGTGT-GTGGATACTTACAT-AACCGCATCTAAATG 358 consensus_9199#3 --TATACTTTGTAGCACCAAAAGATATATCAATGACTATTAGAGCGAAATTGTTACTTTA 205 * * * * * * * * *** * * * consensus_9199#0 ATAATAAAATAATTCGTG-AGAATTTTCTAATACCAGTTATTTGTTAAATTTCA--TGTT 745 consensus_9199#1 ATAATAAAAATAATCGTG-AGAATTTTCTAAT-CCAGNTNNATTGTAAATTTCA--TGTC 786 consensus_9199#2 CAAGTTAATGTATAGGAATATAATGCAGTAATTTCAGTGGGTTATTATTTGCAAGTTGGT 418 consensus_9199#3 AAAACATCGCTTTTCGAAACCTATTTTCAGATTCACGCTAATTGTCGAATAAGACGTATA 265 * * ** ** * * * * * consensus_9199#0 CATTTATGTTAATCTTCTTGGTTAACGTTCTTCAGTGTGTTGAAACTACTGCTGA-ATTA 804 consensus_9199#1 A--TTATGTAAATCT--CTGGNTAACGT-CTCATGTGTGAACTACGTGATACACATGTTT 841 consensus_9199#2 TACTTCCGAAAAATCGTTAACGATGTGTAAATTAATGCGCATAAACCACATTAGATATAA 478 consensus_9199#3 TATTTTTGTGACCGCCTCTATTCGGA---------------------------------- 291 ** * * consensus_9199#0 -CACATTGTTTTCTCAGTTGCATCATAATTTTACTGGGTTAACGTCATGTTGTAACTATC 863 consensus_9199#1 -CAGTGCATATATTCTGGTACGCAGTGACTTAGCTAA----------------------- 877 consensus_9199#2 ACAATCCAGTTAGAATGTCGGGAGCGTGTTCTCCTGATGATTCACCACTTATTGATTAT- 537 consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 ATGCTTAAAATGTTTG---- 879 consensus_9199#1 -------------------- consensus_9199#2 GTGCTGTGTGTATGACTCCA 557 consensus_9199#3 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||