These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 952 fasta sequence [GGCGACTCCAACCATATGGAGATGTTGTACTGTATTCTATATGTTTTCCTGAGTCCAAACGTACCAGAAACCCAGGACAGTTAACCATTTGTTTCCTTACTCTTATGTGTCGTTGGCGGATGAGGACTCTGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAAGTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTATCTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAATGAAGGACAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCAT-CCAGTGTCAACAGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTCTCAAACGGTCTTCGCGGAGTCGCATAGGTCTTGCCAAAAACTTTAGGTACCCTGCTCATTTTTCACAACACCAACAGTCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACCTAACTTTAAACCAACCTACATCTGTATACACTAACGCTAAATAATCACACCGGTTGGCACACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCGCAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACACTTACGATTGTTAGACTAAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAATCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAAGCGCAATACCAACTCCTTCAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGA] [+] EMBL CD139516 [GGCGACTCCAACCATATGGAGATGTTGTACTGTATTCTATATGTTTTCCTGAGTCCAAACGTACCAGAAACCCAGGACAGTTAACCATCTGTTTCCTTACTCTTATGTGTCGTTGGCGGATGAGGACTCTGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAAGTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTATCTTCGGGAAGTACACCAACTCGAACTAGGCGTCTCAGCAGAGCGGACCCTTAAAATGAAGGACAAAGTAAGACTGGTACCTCCAAAA ] [-] EMBL CD144653 [ CAATCATATGGAGACACTGAACTGTATCNTACATG TATCCTGAGTCCAAACGTGCCAGAAACATAGGACAGTTAACCATTTGGTTCCTTACTCTTATGTGTCGTTGGCGGATGAGGACTCTGGCATGATGGATGCTTCTGGACAAGCCAAGTTTAAAAACTTGAGTTTGAAGTCTTCGTTCTAAACAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTATCTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAACGAAGGGCAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCAT CCAGTGTCAACAGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTC ] [+] EMBL CD144755 [ ccacGGAGATGTTGTACTGTATTCTATATGTTTTCCTGAGCCCAAACGTACCAGAAACCCAGGACAGTTAACCATTTGTTTCCTTACTCTTATGTGTCGTTGGCGGATGAGGACTCTGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAAGTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTATCTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAATGAAGGACAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCAT CCAGTGTCAACAGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTCTCAAACGGTCTCCGtg ] [-] EMBL CD144632 [ GTATTCTATATGTTNTCCTGAGTCCAAACGTACCAGAAACCCAGGACAGTTAACCATTTGTTTCCTTACTCTTATGTGTCGTTGGCGGATGAGGACTCCGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAAGTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAGATCCAGTTTCATCCTATCTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAATGAAGGACAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCAT CCAGTGTCAACAGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTC ] [-] EMBL CD144628 [ GTATTCTATATGTTTTCCTGAGTCCAAACGTACCAGAAACCCAGGACAGTTAACCATTTGTTTCCTTACTCTTATGTGTCGTTGGCGGATGAGGACTCTGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAAGTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTACCTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAATGAAGGACAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCAT CCAGTGTCAACAGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTC ] [-] EMBL AA559648 [ ACTAAGCGTNTCAGCAGAGCGGACCCTTAAAATGAAGGACAAAGTAAGACTGGTACCTCCAAAAAGTNGTCTGGGGTCTTTATCATCCCAGTGTCAACAGCTCGCGGGCTGACTTANGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTCTCAAACGGTCTTCGCGGAGTCGCATAGGTCTTGCCAAAAACTTTAGGTACCCTGCTCATTTTTCACAACACC ] [-] EMBL CD090549 [ TACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTCTCAAACGGTCTTCGCGGAGTCGCATAGGTCTTGCCAAAAACTTTAGGTACCCTGCTCATTTTTCACAACACCAACAGTCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACCTAACTTTAAACCAACCTACATCTGTATACACTAACGCTAAATAATCACACCGGTTGGCACACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAA ] [-] EMBL CD115292 [ TTTCGTTCGGCCACACCTAACTCTAAACCAACCTACATCTGTCTACACTAACGCTAAATAATCACACCGGTTGGCACACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCGCAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACACTTACGATTGTTAGACTAAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAATCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAAGCGCAATACCAACTCCTTCAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGA] consensusID : consensus_9217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [CCAGAATGGCCAACACCAACAGGTCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACCTAACTTTAAACCAACCTACATCTGTCTACACTAACGCTAAATAATCACACCGGTTGGCACACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCGCAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACACTTACGATTGTTAGACTGAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAATCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAGGCGCAATACCAACTCCTTCAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGATTCACACACA] [-] EMBL CD068717 [CCAGAATGGCCAACACCAACAGGTCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACCTAACTTTAAACCAACCTACATCTGTCTACACTAACGCTAAATAATCACACCGGTTGGCACACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCGCAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACACTTACGATTGTTAGACTGAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAATCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAGGCGCAATACCAACTCCTTCAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGATTCACACACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9217#0 GGCGACTCCAACCATATGGAGATGTTGTACTGTATTCTATATGTTTTCCTGAGTCCAAAC 60 consensus_9217#1 ------------------------------------------------------------ consensus_9217#0 GTACCAGAAACCCAGGACAGTTAACCATTTGTTTCCTTACTCTTATGTGTCGTTGGCGGA 120 consensus_9217#1 ------------------------------------------------------------ consensus_9217#0 TGAGGACTCTGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAA 180 consensus_9217#1 ------------------------------------------------------------ consensus_9217#0 GTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTAT 240 consensus_9217#1 ------------------------------------------------------------ consensus_9217#0 CTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAATGAAG 300 consensus_9217#1 ------------------------------------------------------------ consensus_9217#0 GACAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCATCCAGTGTCAAC 360 consensus_9217#1 ------------------------------------------------------------ consensus_9217#0 AGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGT 420 consensus_9217#1 ------------------------------------------------------------ consensus_9217#0 TTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTCTCA 480 consensus_9217#1 ------------------------------------------------------------ consensus_9217#0 AACGGTCTTCGCGGAGTCGCATAGGTCTTGCCAAAAACTTTAGGTACCCTGCTCATTTTT 540 consensus_9217#1 ----------------------------------------------------CCAGAATG 8 ** * consensus_9217#0 CACAACACCAACAG-TCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACC 599 consensus_9217#1 GCCAACACCAACAGGTCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACC 68 ************ ********************************************* consensus_9217#0 TAACTTTAAACCAACCTACATCTGTATACACTAACGCTAAATAATCACACCGGTTGGCAC 659 consensus_9217#1 TAACTTTAAACCAACCTACATCTGTCTACACTAACGCTAAATAATCACACCGGTTGGCAC 128 ************************* ********************************** consensus_9217#0 ACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCG 719 consensus_9217#1 ACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCG 188 ************************************************************ consensus_9217#0 CAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACAC 779 consensus_9217#1 CAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACAC 248 ************************************************************ consensus_9217#0 TTACGATTGTTAGACTAAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAA 839 consensus_9217#1 TTACGATTGTTAGACTGAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAA 308 **************** ******************************************* consensus_9217#0 TCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAAGCGCAATACCAACTCCTT 899 consensus_9217#1 TCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAGGCGCAATACCAACTCCTT 368 ***************************************** ****************** consensus_9217#0 CAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGA------- 952 consensus_9217#1 CAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGATTCACAC 428 ***************************************************** consensus_9217#0 --- consensus_9217#1 ACA 431 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||