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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1061 fasta sequence
[GGATTCCCCGCTTAATTTCTAAAGGCGCTATCTCAAAACTGACCGTTTACACTTAACAAAGCATCTGTGTAATTATTCAAAGGAGGTTACGCCGTTTCTGAAGCGTATTCTATAATAAAAATGATGTTGCATCCTTCGGATTCTGAAGACATTGTCGAAGAGAGAGTAATAAACGAAGAATACAAGATATGGAAGAGGAATACTCCGTTCTTGTACGATATGCTGATGTCACACTGCTTGGAATGGCCAAGTTTAACTGCCCAATGGTTGCCATCTGTGGAAAGGACTGGGCGAGATTACTCCGTTCATCGTTTAATACTCGGGACTCACACATCTGATGAGCAAAATCACTTGTTGATAGTTACGGTTCATCTACCAAATGACCAGGCGGAGTTTGATGCAAGTGCTTATGATAGTGAACGAGGTGATTTCGGGGGATTTTATTTTCCATCTGGGAAGTTGGAAATATCAATGAAAATAAATCATGAAGGCGAAGTCAATCGTGCTAGGTTTATGCCACAGAACCCAGACATAATAGCTACCAAAACACCAAGTGGTGATGTTTTAATATTCAATTATCCAAGACATCCACCGAAAACCCCATCAGACCGTGGTTGCCAACCTGATCTACGTCTCAAGGGTCATCAAAAAGAAGGTT-ATGGTCTTTCATGGAATGTGTCTCTTAATGGTCATCTTCTTTCAGCGTCTGATGATCAGACAATTTGTTTATGGGATGTTAATGCTGCTCCTTTAGATGGCTGTGATCTAGATGCGATGGCTATCTTTACGGGTCATCATTCAGTAGTTGAGGACGTTTCCTGGCACCTTTTCCATGGACATATTTTTGGTTCAGTAGCAGATGATAATAAACTTATGGTTTGGGATACACGGAGTTCAAATCGTACAAAACCTCAGCACCAAGTGGATGCTCATACAGCCGAAGTCAATTGTCTTGCTTTTAATCCATTTTCTGAGTTTATTATTGCTACAGGAAGTGCGGACAAAGTAATTAAGTATTTTACCCTCGTATCTTTTTTTTACACATAAATAACCAAATAACA]
[-] EMBL CD189366 [GGATTCCCCGCTTAATTTCTAAAGGCGCTATCTCAAAACTGACCGTTTACACTTAACAAAGCATCTGTGTAATTATTCAAAGGAGGTTACGCCGTTTCTGAAGCGTATTCTATAATAAAAATGATGTTGCATCCTTCGGATTCTGAAGACATTGTCGAAGAGAGAGTAATAAACGAAGAATACAAGATATGGAAGAGGAATACTCCGTTCTTGTACGATATGCTGATGTCACACTGCTTGGAATGGCCAAGTTTAACTGCCCAATGGTTGCCATCTGTGGAAAGGACTGGGCGAGATTACTCCGTTCATCGTTTAATACTCGGGACTCACACATCTGATGAGCAAAATCACTTGTTGATAGTTACGGTTCATCT ]
[+] EMBL AF297468 [ GTTTACACTTAACAAAGCATCTGTGTAATTATTCAAAGGAGGTTACGCCGTTTCTGAAGCGTATTCTATAATAAAAATGATGTTGCATCCTTCGGATTCTGAAGACATTGTCGAAGAGAGAGTAATAAACGAAGAATACAAGATATGGAAGAGGAATACTCCGTTCTTGTACGATATGCTGATGTCACACTGCTTGGAATGGCCAAGTTTAACTGCCCAATGGTTGCCATCTGTGGAAAGGACTGGGCGAGATTACTCCGTTCATCGTTTAATACTCGGGACTCACACATCTGATGAGCAAAATCACTTGTTGATAGTTACGGTTCATCTACCAAATGACCAGGCGGAGTTTGATGCAAGTGCTTATGATAGTGAACGAGGTGATTTCGGGGGATTTTATTTTCCATCTGGGAAGTTGGAAATATCAATGAAAATAAATCATGAAGGCGAAGTCAATCGTGCTAGGTTTATGCCACAGAACCCAGACATAATAGCTACCAAAACACCAAGTGGTGATGTTTTAATATTCAATTATCCAAGACATCCACCGAAAACCCCATCAGACCGTGGTTGCCAACCTGATCTACGTCTCAAGGGTCATCAAAAAGAAGGTT ATGGTCTTTCATGGAATGTGTCTCTTAATGGTCATCTTCTTTCAGCGTCTGATGATCAGACAATTTGTTTATGGGATGTTAATGCTGCTCCTTTAGATGGCTGTGATCTAGATGCGATGGCTATCTTTACGGGTCATCATTCAGTAGTTGAGGACGTTTCCTGGCACCTTTTCCATGGACATATTTTTGGTTCAGTAGCAGATGATAATAAACTTATGGTTTGGGATACACGGAGTTCAAATCGTACAAAACCTCAGCACCAAGTGGATGCTCATACAGCCGAAGTCAATTGTCTTGCTTTTAATCCATTTTCTGAGTTTATTATTGCTACAGGAAGTGCGGACAAAGTAATTAAGTATTTTACCCTCGTATCTTTTTTTTACACATAAATAACCAAATAACA]
[+] EMBL SMAA28840 [ CGTTCTTGTACGATATGCTGATGTCACACTGCTTGGAATGGCCAAGTTTAACTGCCCAATGGTTGCCATCTGTGGAAAGGACTGGGCGAGATTACTCCGTTCATCGTTTAATACTCGGGACTCACACATCTGATGAGCAAAATCACTTGTTGATAGTTACGGTTCATCTACCAAATGACCAGGCGGAGTTTGATGCAAGTGCTTATGATAGTGAACGAGGTGATTTCGGGGGATTTTATTTTCCATCTGGGAAGTTGGAAATATCAATGAAAATAAATCATG AGGCG AGTCAATCGTGCTAGGTTTATG CACAGAA CCAGACAT ATAGCTACC AAACACCAAGTGGTGATG TTTAATATTCAA TATCCAAGACATCCACCGAAAA CCCATCAGA CGTGG TGCCAA CTGATCTACGGCTCAAGGGTCATCAAAAAGGAGGTT ATGGTCTTTCATGG ]
[+] EMBL SMAA28841 [ CGTTCTTGTACGATATGCTGATGTCACACTGCTTGGAATGGCCAAGTTTAACTGCCCAATGGTTGCCATCTGTGGAAAGGACTGGGCGAGATTACTCCGTTCATCGTTTAATACTCGGGACTCACACATCTGATGAGCAAAATCACTTGTTGATAGTTACGGTTCATCTACCAAATGACCAGGCGGAGTTTGATGCAAGTGCTTATGATAGTGAACGAGGTGATTTCGGGGGATTTTATTTTCCATCTGGGAGGTTGGAAATATCAATGAAAATAAATCATGAAGGCGAAGTCAATCGTGCTAGGTTTATG CACAGAACCCAGACATAATAGCTACC AAACACCAAGTGGTGATGTTTAAATATTCAATTATCC AGACATCCACCGAAAA CCCATCAGACCGTGGTTGCCAACCTGATCTA GTCTCAAGGGTCATCAAAAA AAGGTTAATGGTCTTTCATGGAATGTG ]
[+] EMBL SMAA28842 [ CGTTCTTGTACGATATGCTGATGTCACACTGCTTGGAATGGCCAAGTTTAACTGCCCAATGGTTGCCATCTGTGGAAAGGACTGGGCGAGATTACTCCGTTCATCGTTTAATACTCGGGACTCACACATCTGATGAGCAAAATCACTTGTTGATAGTTACGGTTCATCTACCAAATGACCAGGCGGAGTTTGATGCAAGTGCTTATGATAGTGAACGAGGTGATTTCGGGGGATTTTATTTTCCATCTGGGAAGTTGGAAATATCAATGAAAATAAATCATGAAGGCGAAGTCAATCGTGCTAGGTTTATGCCACAG ACCCAGACAT ATAGCTACC AAACACCAAGTGGTGATG TTTAATATTCAA TATCC AGACATCCACCGAAA CCCATCAGACCGTGGTTGCCAACCTGATCTACGTCTCAAGGGTCATCAAAAAGAAGGTT ATGGTCTTTCATGGAATGTGTCTCTTAATGGTCATCTTCTTTCAGCGTCTGATGATCAGACAATT ]
[-] EMBL CD148182 [ GGCGGAGTTGGATGCAAGTGCTTATGATAGTGAGCGAGGTGATTTCGGGGGATTTTATTTTCCATCTGGGAAGTTGGAAATATCAATGAAAATAAATCATGAAGGCGAAGTCAATCGTGCTAGGTTTATGCCACAGAACCCAGACATAATAGCTACCAAAACACCAAGTGGTGATGTTTTAATATTCAATTATCCAAGACATCCACCGAAAACCCCATCAGACCGTGGTTGCCAACCTG ]
[+] EMBL CD184865 [ AGTGCTTATGATAGTGAACGAGGTGATTTCGGGGGATTTTATTTTCCATCTGGGAAGTTGGAAATATCAATGAAAATAAATCATGAAGGCGAAGTCAATCGTGCTAGGTTTATGCCACAGAACCCAGACATAATAGCTACCAAAACACCAAGTGGTGCTGTTTTAATATTCAATTATCCAAGACATCCACCGAAAACCCCATCAGACCGTGGTTGCCAACCTGATCTACGTCTCAAGGGTCATCAAAAAGAAGGTT ATGGTCTTTCATGGAATGTGTCTCTTAATGGTCATCTTCTTTCAGCGTCTGATGATCAGACAATTTGTTTATGGGAAGTTAATGCTGCTCCTTTAGATGGCTGTGATCTAGATGCGATGGCTATCTTTACGGGTCATCATTCAGTAGTTGAGGACGTTTCCTGGCACCTTTTCCATGGACATATTTTTGGTTCAGTAGCAGATGATTATAAAC ]
[-] EMBL CD183857 [ CAAAACACCAAGTGGTGATGTTTTAATATTCAATTATCCAAGACATCCACCGAAAACCCCATCAGACCGTGGTTGCCAACCTGATCTACGTCTCAAGGGTCATCAAAAAGAAGGTT ATGGTCTTTCATGGAATGTGTCTTTTAATGGTCATCTTCTTTCAGCGTCTGATGATCAGACAATTTGTTTATGGGATGTTAATGCTGCTCCTTTAGATGGCTGTGATC ]
consensusID : consensus_9225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 247 fasta sequence
[TCTAGGAAACTAGTATTGGATATGCAATAACTACACTTTACTTTCAACATAAAACGATAGCGATTCTATTTCCCATAGTTTTGTATTTTACTATTGGAACACCCGTAATTATTTTGTAATTCCTCTCATGTTCTCTGTACTCTAAGACCGTTTACACTTAACAAAGCATCTGTGTAATTATTCAAAGGAGGTTACGCCGTTTCTGAAGCGTATTCTATAATAAAAATGATGTTGCATCCTTCGTATA]
[-] EMBL CD193990 [TCTAGGAAACTAGTATTGGATATGCAATAACTACACTTTACTTTCAACATAAAACGATAGCGATTCTATTTCCCATAGTTTTGTATTTTACTATTGGAACACCCGTAATTATTTTGTAATTCCTCTCATGTTCTCTGTACTCTAAGACCGTTTACACTTAACAAAGCATCTGTGTAATTATTCAAAGGAGGTTACGCCGTTTCTGAAGCGTATTCTATAATAAAAATGATGTTGCATCCTTCGTATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9225#0 GGATTCCCCGCTTAATTTCTAAAGGCGCTATCTCAAAACTGACCGTTTACACTTAACAAA 60
consensus_9225#1 ------------------------------------------------------------
consensus_9225#0 GCATCTGTGTAATTATTCAAAGGAGGTTACGCCGTTTCTGAAGCGTATTCTATAATAAAA 120
consensus_9225#1 ------------------------------------------------------------
consensus_9225#0 ATGATGTTGCATCCTTCGGATTCTGAAGACATTGTCGAAGAGAGAGTAATAAACGAAGAA 180
consensus_9225#1 ------------------------------------------------------------
consensus_9225#0 TACAAGATATGGAAGAGGAATACTCCGTTCTTGTACGATATGCTGATGTCACACTGCTTG 240
consensus_9225#1 ------------------------------------------------------------
consensus_9225#0 GAATGGCCAAGTTTAACTGCCCAATGGTTGCCATCTGTGGAAAGGACTGGGCGAGATTAC 300
consensus_9225#1 ------------------------------------------------------------
consensus_9225#0 TCCGTTCATCGTTTAATACTCGGGACTCACACATCTGATGAGCAAAATCACTTGTTGATA 360
consensus_9225#1 ------------------------------------------------------------
consensus_9225#0 GTTACGGTTCATCTACCAAATGACCAGGCGGAGTTTGATGCAAGTGCTTATGATAGTGAA 420
consensus_9225#1 ------------------------------------------------------------
consensus_9225#0 CGAGGTGATTTCGGGGGATTTTATTTTCCATCTGGGAAGTTGGAAATATCAATGAAAATA 480
consensus_9225#1 ------------------------------------------------TCTAGGAAACTA 12
** * **** **
consensus_9225#0 AATCATGAAGGCGAAGTCAATCGTGCTAGGTTTATGCCACAGAACC-CAGACATAATAGC 539
consensus_9225#1 G-TATTGGATATGCAAT-AACTACACTTTACTTTCAACATAAAACGATAGCGATTCTATT 70
* ** * * * * ** ** ** ** * *** ** ** **
consensus_9225#0 TACCAAAACACCAAGTGGTGATGTTTTAATATTC--AATTATCCAAGACATCCACCGAAA 597
consensus_9225#1 TCCCATAGTTTTGTATTTTACTATTGGAACACCCGTAATTATTTTGTAATTCCTCTCATG 130
* *** * * * * ** ** * * ****** * *** * *
consensus_9225#0 ACCCCATCAGACCGTGGTTGCCAAC-CTGATCTACGTCTCAAGGGTCATCAA--AAAGAA 654
consensus_9225#1 TTCTCTGTACTCTAAGACCGTTTACACTTAACAAAGCATCT-GTGTAATTATTCAAAGGA 189
* * * * * * ** ** * * * * ** * ** ** * **** *
consensus_9225#0 GGTTATGGTCTTTCATGGAATGTGTCTCTTAATGGTCATCTTCTTTCAGCGTCTGATGAT 714
consensus_9225#1 GGTTACGCCGTTTC-TGAAGCGTATTCTATAATAAAAATGATGTTGCATCCTTCGTATA- 247
***** * **** ** * ** * **** ** * ** ** * * * *
consensus_9225#0 CAGACAATTTGTTTATGGGATGTTAATGCTGCTCCTTTAGATGGCTGTGATCTAGATGCG 774
consensus_9225#1 ------------------------------------------------------------
consensus_9225#0 ATGGCTATCTTTACGGGTCATCATTCAGTAGTTGAGGACGTTTCCTGGCACCTTTTCCAT 834
consensus_9225#1 ------------------------------------------------------------
consensus_9225#0 GGACATATTTTTGGTTCAGTAGCAGATGATAATAAACTTATGGTTTGGGATACACGGAGT 894
consensus_9225#1 ------------------------------------------------------------
consensus_9225#0 TCAAATCGTACAAAACCTCAGCACCAAGTGGATGCTCATACAGCCGAAGTCAATTGTCTT 954
consensus_9225#1 ------------------------------------------------------------
consensus_9225#0 GCTTTTAATCCATTTTCTGAGTTTATTATTGCTACAGGAAGTGCGGACAAAGTAATTAAG 1014
consensus_9225#1 ------------------------------------------------------------
consensus_9225#0 TATTTTACCCTCGTATCTTTTTTTTACACATAAATAACCAAATAACA 1061
consensus_9225#1 -----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||