These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 769 fasta sequence [TTCGGCACGACGGGACGATTCTATTCGTTATTGGACCCACTTATGCTAGAATATATTCCAATTATTGCTTCTGTAGCTGAACACCAGCCGACCGCTTGGAGTTGTTATTATTTCGATCTTCATTTCTTAACGGTAATGTTTCCTGTGGGTTTATACTATTGCTTCCGGAAATTGACAGATGCTAGTATCTTTGCAATAATATATGGCATTACAAGCGTTTACTTTTCGGGTGTTATGGTTCGGCTTATCTTAGTATTAGCACCGATAATGTGTATTTTGGGCGCGATTGGAGTTTCTGGAATTTTGAAGTCATTTTCAGTTAATCTTAATGCACCAGATAGTCAAAGTAC-AAAAACACCAAGTAAACTTACCGCAGCTAATGGATATCCATCTATCCCAAATAGTAATAAACTTTATAAAAATGCAGTCCAAGACTCAACTTATCCGTTCAAAAATACAGCATTGTATATGGGTTATATCATCGTCATATTCTCATCCATCGATTGTATTAGAAACTGTAGATAGTTTTGGTAATCGTCATATATTAGATGATTATAGAGAAGCATATTATTGGCTTAGAGAGAATACAAAGGCTGATGCTAAAATTATGTCTTGGTGGGATTACGGCTATCAGATTACTGCTATTGCTAATCGTACTGTGCTTGTGGACAATAATACATGGAATAATACTCATATTGGTCGTGTGGGTCAAGCTATGGCATCATCTGAAGAGGAAGCTTATGANATTATGAAAGACTTAGATGTTGAT] [+] EMBL CD081152 [TTCGGCACGACGGGACGATTCTATTCGTTATTGGACCCACTTATGCTAGAATATATTCCAATTATTGCTTCTGTAGCTGAACACCAGCCGACCGCTTGGAGTTGTTATTATTTCGATCTTCATTTCTTAACGGTAATGTTTCCTGTGGGTTTATACTATTGCTTCCGGAAATTGACAGATGCTAGTATCTTTGCAATAATATATGGCATTACAAGCGTTTACTTTTCGGGTGTTATGGTTCGGCTTATCTTAGTATTAGCACCGATAATGTGTATTTTGGGCGCGATTGGAGTTTCTGGAATTTTGAAGTCATTTTCAGTTAATCTTAATGCACCAGATAGTCAAAGTAC AAAAACACCAAGTAAACTTACCGCAGCTAATGGATATCCATCTATCCCAAATAGTAATAAACTTTATAAAAATGCAGTCCAAGACTCAACTTATCCGTTCAAAAATACAGCATTGTATATGGGTTATATCATCGTCATATTCTCATCCATCGATTGTATTAGAAACTGTAGATAGTTTTGGTAATCGTCATATATTAGATGATTATAGAGAAGCATATTATTGGCTTAGAGAGAATACAAAGGCTGATGCTAAAATTATGTCTTGGTGGGATTACGGCTATCAGATTACTGCTATTGCTAATCGTACTGTGCTTGTGGACAATAATACATGGAATAATACTCATATTGGTCGTGTGGGTCAAGCTATGGCATCATCTGAAGAGGAAGCTTATGANATTATGAAAGACTTAGATGTTGAT] [+] EMBL CD198852 [ GGAGTTGTTATTATTTCGATCTTCATTTCTTAACGGTAATGTTTCCTGTGGGTTTATACTATTGCTTCCGGAAATTGACAGATGCTAGTATCTTTGCAATAATATATGGCATTACAAGCGTTTACTTTTCGGGTGTTATGGTTCGGCTTATCTTAGTATTAGCACCGATAATGTGTATTTTGGGCGCGATTGGAGTTTCTGGAATTTTGAAGTCATTTTCAGTTAATCTTAATGCACCAGATAGTCAAAGTAC AAAAACACCAAGTAAACTTACCGCAGCTAATGGATATCCATCTATCCCAAATAGTAATAAACTTTATAAAAATGCAGTCCAAGACTCAACTTATCCGTTCAAAAAT ] [+] EMBL CD198884 [ GGAGTTGTTATTATTTCGATCTTCATTTCTTAACGGTAATGTTTCCTGTGGGTTTATACTATTGCTTCCGGAAATTGACAGATGCTAGTATCTTTGCAATAATATATGGCATTACAAGCGTTTACTTTTCGGGTGTTATGGTTCGGCTTATCTTAGTATTAGCACCGATAATGTGTATTTTGGGCGCGATTGGAGTTTCTGGAATTTTGAAGTCATTTTCAGTTAATCTTAATGCACCAGATAGTCAAAGTACAAAAAACACCAAGT AACTTACCGCAGCTAATGGATATCCATCTATCCCNAATAG ] [+] EMBL CD199095 [ GGAGTTGTTATTATTTCGATCTTCATTTCTTAACGGTAATGTTTCCTGTGGGTTTATACTATTGCTTCCGGAAATTGACAGATGCTAGTATCTTTGCAATAATATATGGCATTACAAGCGTTTACTTTTCGGGTGCTATGGTTCGGCTTATCTTAGTATTAGCACCGATAATGTGTATTTTGGGCGCGATTGGAGTTTCTGGAATTTTGAAGTCATTTTCAGNTAATCTTAATGCACCAGATAGTCAAAGTAC AAAA ] [+] EMBL CD179915 [ CGGTAATGTTTCCTGTGGGTTTATACTATTGCTTCCGGAAATTGACAGATGCTAGTATCTTTGCAATAATATATGGCATTACAAGCGTTTACTTTTCGGGTGTTATGGTTCGGCTTATCTTAGTATTAGCACCGATAATGTGTATTTTGGGCGCGATTGGAGTTTCTGGAATTTTGAAGTCATTTTCAGTTAATCTTAATGCACCAGATAGTCAAAGTAC AAAAACACCAAGTAAACTTACCGCAGCTAATGGATATCCATCTATCCCAAATAGTAATAAACTNTATAAAAATGCAGTCCAAGA ] [+] EMBL CD179930 [ CGGTAATGTTTCCTGTGGGTTTATACTATTGCTTCCGGAAATTGACAGATGCTAGTATCTTTGCAATAATATATGGCATTACAAGCGTTTACTTTTCGGGTGTTATGGTTCGGCTTATCTTAGTATTAGCACCGATAATGTGTATTTTGGGCGCGATTGGAGTTTCTGGAATTTTGAAGTCATTTTCAGTTAATCTTAATGCACCAGATAGTCAAAGTAC AAAAACACCAAGTAAACTTACCGCAGCTAATGGATATCCATCTATCCCAAATAGTAATAAACTTTATAAAAATGCAGTCCA ] consensusID : consensus_9274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [CGAACAGTTATTAAAAGTCATCAGTTTCCACTTGCCAAAAAGTTGTCACTTGTTCTTTGTACTCAAAGTAATTTCATTCAATCCAAAAATGCAGTGTTGAAATAGAAGAGAAATTGAAGGTGTACTGAGTTTTGCATGATGTACCATGTTGTCCATTTTCCACCGAATGGATAAGTCACTTAACTCAGAAATCACCATCACGTCATTGAGTAATATTTAAGGGTTTCTTATTTCTCTGTTCTTCCATTCATTAACTTCAAATGATTTCAGCCTATTCTTTTCATAGAAATTTGTTCGCAATACAATACAAGTGAAACATGCCAAAATGCAACGACGGCGAATATGACATGTATTTGGTGTCAAAAAGGGAAGAAATGTATAGAAAGTAACAATCCGGACACTCATAGCTTGAAAGTCAATGACTGCCGTGTTGAGGTTGGTAATTGGTAAACTTCATATGTCGTTTGCAATAACCTCAAATTTCACATTCTGAGCANATGTTTTTACTGGAAAAAATACTTTCATTGCTATCAATAACAATCGGCATGTTAGCCATCCTCAGTGACTA] [+] EMBL CD154396 [CGAACAGTTATTAAAAGTCATCAGTTTCCACTTGCCAAAAAGTTGTCACTTGTTCTTTGTACTCAAAGTAATTTCATTCAATCCAAAAATGCAGTGTTGAAATAGAAGAGAAATTGAAGGTGTACTGAGTTTTGCATGATGTACCATGTTGTCCATTTTCCACCGAATGGATAAGTCACTTAACTCAGAAATCACCATCACGTCATTGAGTAATATTTAAGGGTTTCTTATTTCTCTGTTCTTCCATTCATTAACTTCAAATGATTTCAGCCTATTCTTTTCATAGAAATTTGTTCGCAATACAATACAAGTGAAACATGCCAAAATGCAACGACGGCGAATATGACATGTATTTGGTGTCAAAAAGGGAAGAAATGTATAGAAAGTAACAATCCGGACACTCATAGCTTGAAAGTCAATGACTGCCGTGTTGAGGTTGGTAATTGGTAAACTTCATATGTCGTTTGCAATAACCTCAAATTTCACATTCTGAGCANATGTTTTTACTGGAAAAAATACTTTCATTGCTATCAATAACAATCGGCATGTTAGCCATCCTCAGTGACTA] consensusID : consensus_9274#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [AATGTTTTATTATTCAAAATAGGGACGGTGGGGATTTGTAATGCCTAAAAAAACAAACTGAAGAATAGGTTACAATATCAAGATTCAGAGGTCAAAAATTTGTCATAATTTTCTTCAGATAAAAGGTTCTTCACTTGTGATAAGTCCGAAAGTCGAAGCTTGAAAAGCCACCCTTCATCTGAAGGGGACTGATTGATTATTTTTGTACTTTTTTCAACATCTGAATTGACTTCAATTATGGTACCTGACACTGGAGAGTATACTTCGCTAACAGCCTTGACTGATTCGACAACGGCACATTGATCTACTTTTAGTGGTCATAAAACCAGGAAATACCATTAACATTGACCTTGTCTCCAACAGCAGGTAATTCAACATACACTATATCACCCAGATTCTGTTCAGCATATTTAGAAATTCCTACAGTCCCAACATCACCATTAACTTTGATCCACTCGTGTTTTTGGGTATAGTAGACATCTGCTTTTATTCAAAAAGATATTGACTTACTGGAGGTCAGTTTACAACTTGTGCTGAAAGTTCTACTCA] [+] EMBL CD076696 [AATGTTTTATTATTCAAAATAGGGACGGTGGGGATTTGTAATGCCTAAAAAAACAAACTGAAGAATAGGTTACAATATCAAGATTCAGAGGTCAAAAATTTGTCATAATTTTCTTCAGATAAAAGGTTCTTCACTTGTGATAAGTCCGAAAGTCGAAGCTTGAAAAGCCACCCTTCATCTGAAGGGGACTGATTGATTATTTTTGTACTTTTTTCAACATCTGAATTGACTTCAATTATGGTACCTGACACTGGAGAGTATACTTCGCTAACAGCCTTGACTGATTCGACAACGGCACATTGATCTACTTTTAGTGGTCATAAAACCAGGAAATACCATTAACATTGACCTTGTCTCCAACAGCAGGTAATTCAACATACACTATATCACCCAGATTCTGTTCAGCATATTTAGAAATTCCTACAGTCCCAACATCACCATTAACTTTGATCCACTCGTGTTTTTGGGTATAGTAGACATCTGCTTTTATTCAAAAAGATATTGACTTACTGGAGGTCAGTTTACAACTTGTGCTGAAAGTTCTACTCA] consensusID : consensus_9274#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [TGGTTGCTGTAGATAGGTTTAGAATAAGTTTAGATGTATGAGTACAATCCGTGTAGAATACGAGAACCTTCCCAGAAGCTTCAACAGGCTTGACGAAAAATTTGTTGCGAGAATAGGATAACTTTTGTATCTCATTCCATGGAAAAGTAACCTTTGGTGCTAATTGGTTGTCGTATTCATAAATATTCAAACCTAAAGCATCAATACCAAGCCATAGGTCCGTCTTTTTCTCATTTTTTATTTTAAAAAATGTAACTCCGAACATTTCTAGATCTTGAGCAATTCTTAGATACTCCTTTACTGCATCGTCCTTGGACATATTTTTATGTGCAGATGCACAATTCAACACTTTAGCTTCCCATTCTTCATTTGATTTAAATAATGGGAAATTTTCATTCTTGGGAATTAAACCAACTGACTTGGACGAAATATTAAAGTTCCCCTTCAGACAAGTGTATTCTTTTACTTCGGAGTTAGATGACACAGATGAATTGTTAACTTCGTCATCAGAAATCTGAGTTGAACTTCGAGAAGGTACCTATGACG] [+] EMBL CD068424 [TGGTTGCTGTAGATAGGTTTAGAATAAGTTTAGATGTATGAGTACAATCCGTGTAGAATACGAGAACCTTCCCAGAAGCTTCAACAGGCTTGACGAAAAATTTGTTGCGAGAATAGGATAACTTTTGTATCTCATTCCATGGAAAAGTAACCTTTGGTGCTAATTGGTTGTCGTATTCATAAATATTCAAACCTAAAGCATCAATACCAAGCCATAGGTCCGTCTTTTTCTCATTTTTTATTTTAAAAAATGTAACTCCGAACATTTCTAGATCTTGAGCAATTCTTAGATACTCCTTTACTGCATCGTCCTTGGACATATTTTTATGTGCAGATGCACAATTCAACACTTTAGCTTCCCATTCTTCATTTGATTTAAATAATGGGAAATTTTCATTCTTGGGAATTAAACCAACTGACTTGGACGAAATATTAAAGTTCCCCTTCAGACAAGTGTATTCTTTTACTTCGGAGTTAGATGACACAGATGAATTGTTAACTTCGTCATCAGAAATCTGAGTTGAACTTCGAGAAGGTACCTATGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9274#1 ------------------------------------------------------------ consensus_9274#3 ------------------------------------------------------------ consensus_9274#2 ------------------------------------------------------------ consensus_9274#0 TTCGGCACGACGGGACGATTCTATTCGTTATTGGACCCACTTATGCTAGAATATATTCCA 60 consensus_9274#1 ------------------------------------------------------------ consensus_9274#3 ------------------------------------------------------------ consensus_9274#2 ------------------------------------------------------------ consensus_9274#0 ATTATTGCTTCTGTAGCTGAACACCAGCCGACCGCTTGGAGTTGTTATTATTTCGATCTT 120 consensus_9274#1 ----------------------------------CGAACAGTTATTAAAAGTC-----AT 21 consensus_9274#3 -----------------------------------TGGTTGCTGTAGATAGGTTTAGAAT 25 consensus_9274#2 ------------------------------------------------------------ consensus_9274#0 CATTTCTTAACGGTAATGTTTCCTGTGGGTTTATACTATTGCTTCCGGAAATTGACAGAT 180 consensus_9274#1 CAGTTTCCACTTGCCAAAA-AGTTGTCACTTGTTCTTTGTAC--TCAAAGTAATTTCATT 78 consensus_9274#3 AAGTTTAGATGTATGAGTACAATCCGTGTAGAATACGAGAACCTTCCCAGAAGCTTCAAC 85 consensus_9274#2 -------AATGTTTTATTA--TTCAAAATAGGGACGGTGGGGATTTGTAAT-GCCTAAAA 50 consensus_9274#0 GCTAGTATCTTTGCAATAATATATGGCATTACAAGCGTTTACTTTTCGGGTGTTATGGTT 240 * * * * * consensus_9274#1 CAATCCAAAAATGCAGT-GTTGAAATAGAAGAGAAATTGAAGGTGTACTGAGTTTTGCAT 137 consensus_9274#3 AGGCTTGACGAAAAATTTGTTGCGAGAATAGGATAACTTTTGTATCTCATTCCATGGAAA 145 consensus_9274#2 AAACAAACTGAAGAATAGGTTACAATATCAAGA----TTCAGAGGTCAAAAATTTGTCAT 106 consensus_9274#0 CGGCTTATCTTAGTATTAGCACCGATAATGTGTA---TTTTGGGCGCGATTGGAGTTTCT 297 * * * * * * consensus_9274#1 GATGTACCATGTT------GTCCATTTTCCACCGAATGGATAAGTCACTTAACTCAGAA- 190 consensus_9274#3 AGTAACCTTTGGT------GCTAATTGGTTGTCGTATTCATAAATATTCAAACCTAAAGC 199 consensus_9274#2 AATTTTCTTCAGATAAAAGGTTCTTCACTTGTGATAAGTCCGAAAGTCGAAGCTTGAAAA 166 consensus_9274#0 GGAATTTTGAAGTCAT--TTTCAGTTAATCTTAATGCACCAGATAGTCAAAGTACAAAA- 354 * * * * consensus_9274#1 ATCACCATCACGTCATTGAGTAATATTTAAGGGTTTCTTATTTCTCTGTTCTTCCATTCA 250 consensus_9274#3 ATCAATACCAAGCCATAGGTCCGTCTTT------TTCTCATTT-TTTATTTTAAAAAATG 252 consensus_9274#2 GCCACCCTTCATCTGAAGGGGACTGATTGA-----TTATTTTTGTACTTTTTTCAACATC 221 consensus_9274#0 ACACCAAGTAAACTTACCGCAGCTAATGGATATCCATCTATCC-CAAATAGTAATAAACT 413 * * * * * * consensus_9274#1 TTAACTTCAAATGATTTCAG--CCTATTCTTTTCATAGAAATTTGTTCGCAATACAATAC 308 consensus_9274#3 T-AACTCCGAACATTTCTAGATCTTGAGCAATTCTTAGATACTCCTTTACTGCATCGTCC 311 consensus_9274#2 TGAATTGACTTCAATTATGGTACCTGACACTGGAGAGTATACTTCGCTAACAGCCTTGAC 281 consensus_9274#0 TTATAAAAATGCAGTCCAAGACTCAACTTATCCGTTCAAAAATACAGCATTGTATATGGG 473 * * * * * * * consensus_9274#1 AAGTGAAACA----TGCCAAAATGCAACGACGGCGAATATGACATGTATTTGGTGTCAAA 364 consensus_9274#3 ---TTGGACA----TATTTTTATGTGCAGATGCACAATTCAACAC---TTTAGCTTCCCA 361 consensus_9274#2 TGATTCGACAACGGCACATTGATCTACTTTTAGTGGTCATAAAACCAGGAAATACCATTA 341 consensus_9274#0 TTATATCATCGTCATATTCTCATCCATCGATTGTATTAGAAACTGTAGATAGTTTTGGTA 533 * * ** * * consensus_9274#1 AAGGGAAGAAATGTATAGAAAGTAACAATCCGGACACTCATAGCTTGAA--AGTCAATGA 422 consensus_9274#3 TTCTTCATTTG-ATTTAAATAATGGGAA-----ATTTTCATT-CTTGGG--AATTAA--A 410 consensus_9274#2 ACATTGACCTTGTCTCCAACAGCAGGTAATTCAACATACACTATATCACCCAGATTCTGT 401 consensus_9274#0 ATCGTCATATATTAGATGATTATAGAGAAGC--ATATTATTGGCTTAGAGAGAATACAAA 591 * * * * * consensus_9274#1 CTGCCGTGTTGAGG--TTGGTAATTGGTAAACTTCATATGTCGTTTGCAATAACCTCAAA 480 consensus_9274#3 CCAACTGACTTGGA--CG---AAATATTAAAGTTCCCCTTCAGACAAGTGTATTCTTTTA 465 consensus_9274#2 TCAGCATATTTAGAAATTCCTACAGTCCCAACATCACCATTAACTTTGATCCACTCGTGT 461 consensus_9274#0 GGCTGATGCTAAAATTATGTCTTGGTGGGATTACGGCTATCAGATTACTGCTATTGCTAA 651 * * consensus_9274#1 TTTCA--CATTCTGAGCANAT--GTTTTTACTGGAAAAAATACTTTCATTGCTATCAATA 536 consensus_9274#3 CTTCG--GAGTTAGATGACAC--AGAT------GAATTGTTAACTTCGTCATCAGAAATC 515 consensus_9274#2 TTTTG--GGTATAGTAGACATCTGCTTTTATTCAAAAAGATATTGAC-TTACTGGAGGTC 518 consensus_9274#0 TCGTACTGTGCTTGTGGACAATAATACATGGAATAATACTCATATTGGTCG-TGTGGGTC 710 * * * ** * * * consensus_9274#1 ACAATCGGCATGTTA--GCCATCCTCAGTGACTA------------------------- 568 consensus_9274#3 TGAGTTGAACTTCGA--GAAGGTACCTATGACG-------------------------- 546 consensus_9274#2 AGTTTACAACTTGTGCTGAAAGTTCTACTCA---------------------------- 549 consensus_9274#0 AAGCTATGGCATCATCTGAAGAGGAAGCTTATGANATTATGAAAGACTTAGATGTTGAT 769 * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||