These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9291#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 789 fasta sequence [AGATTTTGTGAGCGATTTACATTTACATCGGAATTTTTTCCGCCGGTTGCGAATTTTGATTTGAACTAATTGTGGATGGGTTTGTTGGGCGAGAGGAAGTAGTACACCATAGTTCGATTACGCACTAAAGAGCTTGCTGGTTGATTGATCGGGCACAGAACGAGCAGGACCAGAGTTTGATGACTGGCGACGATTTGCTGGAGGTATAAGGCTATCAGTTGCAGAAACAAGTGAGACTAAATTCTGTCCTCTAGCTCCAGCAGGCAA-AG-AGTTCGAGTTAAAATTATGATTACCAGTATTACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAG-AGAGTTAGTTGTTGAGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGTAACTGCTGTTTGGGCACTAGAAACGTTTAAAGCAGACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAGCAAAATTAACGAGGTTGGGCTGGCCCATAATACCTTCCAAACCAAACTGCTGCAGTGACAGAACCGAATTTCCAGTTATACTGCTAAGGGCTTGAGCTTGTAAAGCAAGTTCTGAAAGG-TTAGTGC-TTGTCAAGGGG-TTCCAGGACGGAAGCGACGAACCAATATTCGATCTCCCTCGCTTACGGTTTTTCGGTTCGGATGCTATGGTTACATCTAAAACCATATTGTAATAGGTTTTTGAATCTTCACCAATAACTGCGGCTCGTGCATTAATCTCGTTTGCGTATTGAATGAATGCATA] [+] EMBL CD178469 [AGATTTTGTGAGCGATTTACATTTACATCGGAATTTTTTCCGCCGGTTGCGAATTTTGATTTGAACTAATTGTGGATGGGTTTGTTGGGCGAGAGGAAGTAGTACACCATAGTTCGATTACGCACTAAAGAGCTTGCTGGTTGATTGATCGGGCACAGAACGAGCAGGACCAGAGTTTGATGACTGGCGACGATTTGCTGGAGGTATAAGGCTATCAGTTGCAGAAACAAGTGAGACTAAATTCTGTCCTCTAGCTCCAGCAGGCAA AG AGTTCGAGTTAAAATTATGATTACCAGTATTACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAG AGAGTTAGTTGTTGAGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGTAACTGCTGTTTGGGCACTAGAAACGTTTAAAGCAGACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAGCAAAATTAACGAGGTTGGGCTG ] [+] EMBL CD194850 [ GGCGACGATTTGCTGGAGGTATAAGGCTATCAGTTGCAGAAACAAGTGAGACTAAATTCTGTCCTCTAGCTCCAGCAGGCAA AG AGTTCGAGTTAAAATTATGATTACCAGTATTACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAG AGAGTTAGTTGTTGAGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGTAACTGCTGTTTGGGCACTAGAAACGTTTAAAGCAGACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAGCAAAATTAACGAGGTTGGGCTGGCCCATAATACCTTCCAAACCAAACTGCTGCAGTGACAGAACCGAATTTCCAGTTATACTGCTAAGGGCTTGAGCTTGTAAAGCAAGTTCTGAAAGG TTAGTGC TTGTCAAGGGG TTCCAGGACGGAAGCGACGAACCAATATTCGATCTCCCTCGCTTACGGTTTTTCGGTTCGGATGCTATGGTTACATCTAAAACCATATTGTAATAGGTTTTTGAATCTTCACCAATAACTGCGGCTCGTGCATTAATCTCGTTTGCGTATTGAATGAATGCATA] [+] EMBL CD164629 [ acacGAGACTAAATTCTGTCCTCTAGCTCCAGCAGGCAA AG AGTTCGAGTTAAAATTATGATTACCAGTATTACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAG AGAGTTAGTTGTTGAGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTGTATTACCCGCTGTAACTGCTGTTTGGGCACTAGAAACGTTTAGAGCAGACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAGCAAAATTAACGAGGTTGGGCTGGCCCATAATACCTTCCAAACCAAACTGCTGCAGTGACAGAACCGAATTTCCAGTTATACTGCTAAGGGCTTGAGCTTGTAAAGCAAGTTCTGAAAGG TTAGTGC TTGTCAAGGGG TTCCAGGACGGAAGCGACGAACCAATATTCGATCTCCCTCGCTTACGGTTTTTCGGTTCGGATGCTATGGTTACATCTAAAACCATATTGTAATAGGTTTTTGAATCTTCAC ] [+] EMBL CD164546 [ TCCTCTAGCTCCAGCAGGCAA AG AGTTCGAGTTAAAATTATGATTACCAGTATTACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAGAAGAGTTAGTTGTTGTGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGTAACTGCTGTTTGGGCACTAGAAACGTTTAAAGCAGACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAGCAAAATTAACGAGGTTGGGCTGGCCCATAATACCTTCCAAACCAAACTGCTGCAGTGACAGAACCGAATTTCCAGTTATACTGCTAAGGGCTTGAGCTTGTAAAGCAAGTTCTGAAAGGTTTAGTGCTTTGTCAAGGGGTTTCCAGGACGGAAGCGACGAACCAATATTCGATCTCCCTCGCTTACGGTTTTTCGGTTCGGATGCTATGGTTACATCTAAAACCATATTG AATACGTTTTTGAATCTTaa ] [+] EMBL CD164593 [ TCCTCTAGCTCCAGCAGGCAA AG AGTTCGAGTTAAAATTATGATTACCAGTATTACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAG AGAGTTAGTTGTTGAGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGCAACTGCTGTTTGGGCACTAGAAACGTTTAAAGCAGACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAGCAAAATTAACGAGGTTGGGCTGGCCCATAATACCTTCCAAACCAAACTGCTGCAGTGACAGAACCGAATTTCCAGTTATACTGCTAAGGGCTTGAGCTTGTAAAGCAAGTTCTGAAAGG TTAGTGC TTGTCAAGGGG TTCCAGGACGGAAGCGACGAACCAATATTCGATCTCCCTCGCTTACGGGTTTTCGGTTCGGATGCTATGGTTACATCTNAAACCATATTGGAATAGGTTTTTGAATCTTCc ] [+] EMBL CD164561 [ TCCTCTAGCTCCAGCAAGAAACAGAAACTCGCGCTGCAAGGATGATTACCAAGCTTACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAG AGAGTTAGTTGTTGAGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGTAACTGCTGTTTGGGCACTAGAAACGTTTAAAGCAGACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAGCAAAATTAACGAGGTTGGGCTGGCCCATAGTACCTTGCAAACCAAACTGCTGCAGTGACAGAACCGAATTTCCAGTTATACTGCTAAAGGCTTGAGCTTGTAAAGCAAGTTCTGAAAGG TTAGTGC TTGTCAAGGGG TTCCAGGACGGAAGCGACG ] [+] EMBL CD125250 [ TCCTCTAGCTCCAGCAGGCAA AG AGTTCGAGTTAAAATTATGATTACCAGTATTACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAG AGAGTTAGTTGTTGAGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGTAACTGCTGTTTGGGCACTAGAAACGTTTAAAGCAGACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAGCAAAATTAACGAGGGTGGGCTGGCCCATAATACCTTCCAAACCAAACTGCTGCAGTGA ] [-] EMBL CD125553 [ CCGAATTTCCAGTTATACTGCTAAGGGCTTGAGCTTGTAAAGCAAGTTCTGAAAGG TTAGTGC TTGTCAAGGGG TTCCAGGACGGAAGCGACGAACCAATATTCGATCTCCCTCGCTTACGGTTTTTCGGTTCGGATGCTATGGTTACATCTAAAACCATATTGTAATAGGTTTTTGAATCTTCACCAATAACTGCGGCTCGTGCATTAGTCTCGTTTGCGTATT ] consensusID : consensus_9291#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [CTAAATTCTGTGCTCTAGCTCCAGCGGGGGGAGAGTTCGAGTTAAAATTATGATTACCAGTATTACCTAACACTCCATCCAAACGAGCACGTTTGGCAGCAAGAGAGTTAGTTGTTGAGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGCAACTGCTGGTTGGGCACTAAAAACGTATAAAGCAAACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAACAAAATTAACGAGGTTGGGCTGGCCCATATACCTTTCAAACCAAACTGGTGGAGTGACAGAACCCAATTTCCACTTATCGTGCTAAGGGTTTGCTCTTGAAAAACAAGTTCTGAAAGTGGTAGCGCTTGTAAAGGTGTTCCAGGACGGAACCCACAAACCAATATTCGATCTCTCCCCGTTACCGGTTTTCGGTTCGGATGCTAGGGTCACTTATAAAAACATATGGCAAAAGGTTTTTAGAATCTTCACAAAA] [+] EMBL CD164557 [CTAAATTCTGTGCTCTAGCTCCAGCGGGGGGAGAGTTCGAGTTAAAATTATGATTACCAGTATTACCTAACACTCCATCCAAACGAGCACGTTTGGCAGCAAGAGAGTTAGTTGTTGAGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGCAACTGCTGGTTGGGCACTAAAAACGTATAAAGCAAACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAACAAAATTAACGAGGTTGGGCTGGCCCATATACCTTTCAAACCAAACTGGTGGAGTGACAGAACCCAATTTCCACTTATCGTGCTAAGGGTTTGCTCTTGAAAAACAAGTTCTGAAAGTGGTAGCGCTTGTAAAGGTGTTCCAGGACGGAACCCACAAACCAATATTCGATCTCTCCCCGTTACCGGTTTTCGGTTCGGATGCTAGGGTCACTTATAAAAACATATGGCAAAAGGTTTTTAGAATCTTCACAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9291#0 AGATTTTGTGAGCGATTTACATTTACATCGGAATTTTTTCCGCCGGTTGCGAATTTTGAT 60 consensus_9291#1 ------------------------------------------------------------ consensus_9291#0 TTGAACTAATTGTGGATGGGTTTGTTGGGCGAGAGGAAGTAGTACACCATAGTTCGATTA 120 consensus_9291#1 ------------------------------------------------------------ consensus_9291#0 CGCACTAAAGAGCTTGCTGGTTGATTGATCGGGCACAGAACGAGCAGGACCAGAGTTTGA 180 consensus_9291#1 ------------------------------------------------------------ consensus_9291#0 TGACTGGCGACGATTTGCTGGAGGTATAAGGCTATCAGTTGCAGAAACAAGTGAGACTAA 240 consensus_9291#1 --------------------------------------------------------CTAA 4 **** consensus_9291#0 ATTCTGTCCTCTAGCTCCAGCAGGCAAAGAGTTCGAGTTAAAATTATGATTACCAGTATT 300 consensus_9291#1 ATTCTGTGCTCTAGCTCCAGCGGGGGGAGAGTTCGAGTTAAAATTATGATTACCAGTATT 64 ******* ************* ** ********************************* consensus_9291#0 ACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAGAGAGTTAGTTGTTGAGGACGC 360 consensus_9291#1 ACCTAACACTCCATCCAAACGAGCACGTTTGGCAGCAAGAGAGTTAGTTGTTGAGGACGC 124 *********************** ************************************ consensus_9291#0 AGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGTAACTGC 420 consensus_9291#1 AGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGCAACTGC 184 ***************************************************** ****** consensus_9291#0 TGTTTGGGCACTAGAAACGTTTAAAGCAGACAATGAGGGGGTATGGAACACTGAATTTGC 480 consensus_9291#1 TGGTTGGGCACTAAAAACGTATAAAGCAAACAATGAGGGGGTATGGAACACTGAATTTGC 244 ** ********** ****** ******* ******************************* consensus_9291#0 CGCAGCAGCAAAATTAACGAGGTTGGGCTGGCCCATAATACCTTCCAAACCAAACTGCTG 540 consensus_9291#1 CGCAGCAACAAAATTAACGAGGTTGGGCTGGCCCATA-TACCTTTCAAACCAAACTGGTG 303 ******* ***************************** ****** ************ ** consensus_9291#0 CAGTGACAGAACCGAATTTCCAGTTATACTGCTAAGGGCTTGAGCTTGTAAAGCAAGTTC 600 consensus_9291#1 GAGTGACAGAACCCAATTTCCACTTATCGTGCTAAGGGTTTGCTCTTGAAAAACAAGTTC 363 ************ ******** **** ********* *** **** *** ******* consensus_9291#0 TGAAAG-GTTAGTGCTTGTCAAGGGGTTCCAGGACGGAAGCGACGAACCAATATTCGATC 659 consensus_9291#1 TGAAAGTGGTAGCGCTTGTAAAGGTGTTCCAGGACGGAACCCACAAACCAATATTCGATC 423 ****** * *** ****** **** ************** * ** *************** consensus_9291#0 TCCCTCGCTTACGGTTTTTCGGTTCGGATGCTATGGTTACATCTAAAACCATATTGTAAT 719 consensus_9291#1 TCTCCCCGTTACCGGTTTTCGGTTCGGATGCTAGGGTCACTTATAAAAACATATGGCAAA 483 ** * * **** * ****************** *** ** * ***** ***** * ** consensus_9291#0 AGGTTTTT-GAATCTTCACCAATAACTGCGGCTCGTGCATTAATCTCGTTTGCGTATTGA 778 consensus_9291#1 AGGTTTTTAGAATCTTCACAAAA------------------------------------- 506 ******** ********** ** consensus_9291#0 ATGAATGCATA 789 consensus_9291#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||