These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9343#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1241 fasta sequence [TTCCAGTTCTTGTGCATCTTTCTTTAAACTGTTTTTGTAACCTTTCTCAAAATCTTTTGCTAGAACAACATAACGATTTTCTCGAACTGCCTGCATTCCAGCCTCTTGGCAAATAGCATTGATGTCTGCACCAGATATCTTATCTGGTCGTGCAACGTAATCTTCCAAGTCAATATCATCACTGAGATTCATTTTGCTGGTGACAGTTGAAAAAATGAGGCGTATTTGACGACGATCTGGCATTGGGAATTCGATTTTACGATCAAGTCGACCAGGGCGCAAAAGTGCTGGGTCTAATGTATCGGCACGATTTGTAGCCATAATAACCTTGACATTTACATTTTGGTCGAATCCATCCATTTGGTTCAACAATTCTAAAAGGATACGCTGTACTTCACGGTCAGCTCCAGTTTGTGCATCAAACCTTTTAGTGGCGATAGCATCGATTTCGTCGATAAATATGATTGCTGGAGCATTTTCTTTCGCCAAACGAAACACATCCCGAACCATTCGAGGACCTTCTCCCAGATACTTCTGAACAAATTCCGATCCAACCACACGAATAAAAGCAGCAGTAGTATGATGCGCGACTGCTTTGGCCAACATTGTCTTCCCACAACCTGGAGGACCATACATTAGAACACCTCTAGGTGGGTCAATCCCAATTTGCTTGTATAATTCGAAATGAGTTAGAGGCAATTCAACAGCTTCTCTCACTTCCTGCTTCTGAATATCCATACCACCAATATCAGAGTAGGATACATCAGGTTTCTCACCAGCTTGGAGCATCGTGATACTACTGTC-TGCTTCTGGGGGAACGACATCAACCAAAGCATTGCTGTGTTTGTGG-AGAGCGACGCTGGCACTTGGCTTCAACAGCTC-GCGATCAATTGTAGATAATATTCGAACGTAGTAATTC-GAACCGGTTGTGGATCC-TACAATACCGGTGCTTTGATCAACAGCTTCTAGAAACTGTCCGATAACAAGCGGGACACTTTTGATCCGCTTGACCTCTTCTTGTGCATGTAAATACTCCTTTTTCAAATTTTTCTGTTCATCTTTGATATAGTTTTCTTGTACCTGAATGAACTCAATTTGCTTTTCAAGGATCTTCAGTTTTACATAAAGATCTTCTTCGCTTAGCTGAAGAGGATCTATATGTCCAAAGTTTATTCCCGAACTTTCAATTGTCTCAAGTTCCTTTGTAACTTGAGGTGCTAACGCAATCTCTTCCATCGCTT] [+] EMBL CD121308 [TTCCAGTTCTTGTGCATCTTTCTTTAAACTGTTTTTGTAACCTTTCTCAAAATCTTTTGCTAGAACAACATAACGATTTTCTCGAACTGCCTGCA ] [+] EMBL CD121302 [ TCCAGTTCTTGTTCATCTTTCTTTAAACTGTTTTTGTAACCTTTCTCAAAATCTTTTGCTAGAACAACATAACGATTTTCTCGAACTGCCTGCATTCCAGCCTCTTGGCAAATAGCATTGATGTCTGCACCAGATATCTTATCTGGTCGTGCAACGTAATCTTCCAAGTCAATATCATCACTGAGATTCATTTTGCTGGTGACAGTTGAAAAAATGAGGCGTATTTGACGACGATCTGGCATTGGGAATTCGATTTTACGATCAAGTCGACCAGGGCGCAAAAGTGCTGGGTCTAATGTATCGGCACGATTTGTAGCCATAATAACCTTGACATTTACATTTTGGTCGAATCCATCCATTTGGTTCAACAATTCTAAAAGGATACGCTGTACTTCACGGTCAGCTCCAGTTTGTGCATCAAACCTTTTAGTGGCGATAGCATCGATTTCGTCGATAAATATGATTGCTGG ] [-] EMBL CD121367 [ TTGACATTTTGGTCGAATCCATCCATTTGGTTCAACAGTTCTAAAAGGATACGCTGTACTTCACGGTCAGCTCCAGTTTGTGCATCAAACCTTTTAGTGGCGATAGCATCGATTTCGTCGATAAATATGATTGCTGGAGCATTTTCTTTCGCCAAACGAAACACATCCCGAACCATTCGAGGACCTTCTCCCAGATACTTCTGAACAAATTCCGACCCAACCACACGAATAAAAGCAGCAGTAGTATGATGCGCGACTGCTTTGGCCAACATTGTCTTCCCACAACCTGGAGGACCATACATTAGAACACCTCTAGGTGGGTCAATCCCAATTTGCTTGTATAATTCGAAATGAGTTAGAGGCAATTCAACAGCTTCTCTCACTTCCTGCTTCTGAATATCCATACCACCAATATCAGAGTAGGATACATCAGGTTT ] [-] EMBL CD183028 [ ATTTCGTCGATAAATATGAGTGCTGGAGCATTTTCTTTCGCCAAACGAAACACATCCCGAACCATTCGAGGGCCTTCTCCCAGATACTTCTGAACAAATTCCGATCCAACCACACGAATAAAAGCAGCAGTAGTATGATGCGCG ] [+] EMBL AI067551 [ TTCTGAACAAATTCCGATCCAACCACACGAATAAAAGCAGCAGTAGTATGATGCGCGACTGCTTTGGCCAACATTGTCTTCCCACAACCTGGAGGACCATACATTATAACACCTCTAGGTGGATCAATCCCAATTTGCTTGTATAATTCGAAATGAGTTAGAGGCAATTCAACAGCTTCTCTCACTTCCTGCTTCTGAATATCCATACCACCAATATCAGAGTATGATACATCACGTTTCTCACCAGCTTGGAGCATCGTGATACTACTGTC TGCTTCTGGGGGAACGACATCAACCAAAGCATTGCTGTGTTTGTGG AGAGCGACGCTGGCACTTGGCTTCAACAGCTC GCGATCAATTGTAGATAATATTCGAACGTACTAATTC GAACCGGTTGTGGATCC TACAATACCGGTGCTTTGATCAACAGCTTCTAGAAACTGTCCGATAACAAGCGGGACACTTTTGATCCGCTTGACATCTTCTTGTGC ] [-] EMBL CD163723 [ ACCATACATTAGAACACCTCTAGGTGGGTCAATCCCAATTTGCTTGTATAATTCGAAATGAGTTAGAGGCAATTCAACAGCTTCTCTCACTTCCTGCTTCTGAATATCCATACCACCAATATCAGAGTAGGATACATCAGGTTTCTCATCAGCTTGGAGCATCGTGAT CTACTGTCATGCTTCTGGGGGAAGGACATCAACCAAAGCATTGCTGTGTTTATGGAAGAGCGACGCTGGCACTTGGCTTCAACAGCTCTGCGATCAATTGTAGATAATATTCGAACGTAGTAATTCAGAACCGGTTGTGGATCCATACAATACCGGTGCTTTGATCAACAGCTTCTAGAAACTGTCCGATAACAAGCGGGACACTTTTGATCCGCTTGACCTCTTCTTGTGCATGTAAATACTCCTTTTTCAAATTTTTCTGTTCATCT ] [-] EMBL CD195670 [ AAAGCATTGCTGTGTTTGTGG AGAGCGACGCTGGCACTTGGCTTCAACAGCTC GCGATCAATTGTAGATAATATTCGAACGTAGTAATTC GAACCGGTTGTGGATCC TACAATACCGGTGCTTTGATCAACAGCTTCTAGAAACTGTCCGATAACAAGCGGGACACTTTTGATCCGCTTGACCTCTTCTTGTGCATGTAAATACTCCTTTTTCAAATTTTTCTGTTCATCTTTGATATAGTTTTCTTGTACCTGAATGAACTCAATTTGCTTTTCAAGGATCTTCAGTTTTACATAAAGATCTTCTTCGCTTAGCTGAAGAGGATCTATATGTCCAAAGTTTATTCCCGAACTTTCAATTGTCTC ] [-] EMBL CD159208 [ TTTTTCAAATTTTTCTGTTCATCTTTGATATAGTTTTCTTGTACCTGAATGAACTCAATTTGCTTTTCAAGGATCTTCAGTTTTACATAAAGATCTTCTTCGCTTAGCTGAAGAGGATCTATATGTCCAAAGTTTATTCCCGAACTTTCAATTGTCTCAAGTTCCTTTGTAACTTGAGGTGCTAACGCAATCTCTTCCATCGCTT] consensusID : consensus_9343#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence [GACATCAACCANAGCATTGCTGTGTTTGTGGAGAGCGACGCTGGCACTTGGCTTCAACAGCTCGCGATCAATTGTAGATAATATTCGAACGTAGTAATTCGAACCGGTTGTGGATCCTACAATACCGGTGCTTTGATCAACAGCTTCTAGAAACTGTCCGATAACAAGCGGGACACTTTTGATCCGCTTGACCTCTTCTTGTGCATGTAAATACTCCTTTTTCAAATTTTTCTGCTTCTGAATATCCATACCACCAATATCAGAGTAGGATACATCA] [-] EMBL CD181333 [GACATCAACCANAGCATTGCTGTGTTTGTGGAGAGCGACGCTGGCACTTGGCTTCAACAGCTCGCGATCAATTGTAGATAATATTCGAACGTAGTAATTCGAACCGGTTGTGGATCCTACAATACCGGTGCTTTGATCAACAGCTTCTAGAAACTGTCCGATAACAAGCGGGACACTTTTGATCCGCTTGACCTCTTCTTGTGCATGTAAATACTCCTTTTTCAAATTTTTCTGCTTCTGAATATCCATACCACCAATATCAGAGTAGGATACATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9343#0 TTCCAGTTCTTGTGCATCTTTCTTTAAACTGTTTTTGTAACCTTTCTCAAAATCTTTTGC 60 consensus_9343#1 ------------------------------------------------------------ consensus_9343#0 TAGAACAACATAACGATTTTCTCGAACTGCCTGCATTCCAGCCTCTTGGCAAATAGCATT 120 consensus_9343#1 ------------------------------------------------------------ consensus_9343#0 GATGTCTGCACCAGATATCTTATCTGGTCGTGCAACGTAATCTTCCAAGTCAATATCATC 180 consensus_9343#1 ------------------------------------------------------------ consensus_9343#0 ACTGAGATTCATTTTGCTGGTGACAGTTGAAAAAATGAGGCGTATTTGACGACGATCTGG 240 consensus_9343#1 ------------------------------------------------------------ consensus_9343#0 CATTGGGAATTCGATTTTACGATCAAGTCGACCAGGGCGCAAAAGTGCTGGGTCTAATGT 300 consensus_9343#1 ------------------------------------------------------------ consensus_9343#0 ATCGGCACGATTTGTAGCCATAATAACCTTGACATTTACATTTTGGTCGAATCCATCCAT 360 consensus_9343#1 ------------------------------------------------------------ consensus_9343#0 TTGGTTCAACAATTCTAAAAGGATACGCTGTACTTCACGGTCAGCTCCAGTTTGTGCATC 420 consensus_9343#1 ------------------------------------------------------------ consensus_9343#0 AAACCTTTTAGTGGCGATAGCATCGATTTCGTCGATAAATATGATTGCTGGAGCATTTTC 480 consensus_9343#1 ------------------------------------------------------------ consensus_9343#0 TTTCGCCAAACGAAACACATCCCGAACCATTCGAGGACCTTCTCCCAGATACTTCTGAAC 540 consensus_9343#1 ------------------------------------------------------------ consensus_9343#0 AAATTCCGATCCAACCACACGAATAAAAGCAGCAGTAGTATGATGCGCGACTGCTTTGGC 600 consensus_9343#1 ------------------------------------------------------------ consensus_9343#0 CAACATTGTCTTCCCACAACCTGGAGGACCATACATTAGAACACCTCTAGGTGGGTCAAT 660 consensus_9343#1 ------------------------------------------------------------ consensus_9343#0 CCCAATTTGCTTGTATAATTCGAAATGAGTTAGAGGCAATTCAACAGCTTCTCTCACTTC 720 consensus_9343#1 ------------------------------------------------------------ consensus_9343#0 CTGCTTCTGAATATCCATACCACCAATATCAGAGTAGGATACATCAGGTTTCTCACCAGC 780 consensus_9343#1 ------------------------------------------------------------ consensus_9343#0 TTGGAGCATCGTGATACTACTGTCTGCTTCTGGGGGAACGACATCAACCAAAGCATTGCT 840 consensus_9343#1 ---------------------------------------GACATCAACCANAGCATTGCT 21 *********** ********* consensus_9343#0 GTGTTTGTGGAGAGCGACGCTGGCACTTGGCTTCAACAGCTCGCGATCAATTGTAGATAA 900 consensus_9343#1 GTGTTTGTGGAGAGCGACGCTGGCACTTGGCTTCAACAGCTCGCGATCAATTGTAGATAA 81 ************************************************************ consensus_9343#0 TATTCGAACGTAGTAATTCGAACCGGTTGTGGATCCTACAATACCGGTGCTTTGATCAAC 960 consensus_9343#1 TATTCGAACGTAGTAATTCGAACCGGTTGTGGATCCTACAATACCGGTGCTTTGATCAAC 141 ************************************************************ consensus_9343#0 AGCTTCTAGAAACTGTCCGATAACAAGCGGGACACTTTTGATCCGCTTGACCTCTTCTTG 1020 consensus_9343#1 AGCTTCTAGAAACTGTCCGATAACAAGCGGGACACTTTTGATCCGCTTGACCTCTTCTTG 201 ************************************************************ consensus_9343#0 TGCATGTAAATACTCCTTTTTCAAATTTTTCTGTTCATCTTTGATATAGTTTTCTTGTAC 1080 consensus_9343#1 TGCATGTAAATACTCCTTTTTCAAATTTTTCTGCTTCTGAAT-ATCCATACCACCAATAT 260 ********************************* * * * ** * * ** consensus_9343#0 CTGAATGAACTCAATTTGCTTTTCAAGGATCTTCAGTTTTACATAAAGATCTTCTTCGCT 1140 consensus_9343#1 CAGAGTAGGATACATCA------------------------------------------- 277 * ** * * ** consensus_9343#0 TAGCTGAAGAGGATCTATATGTCCAAAGTTTATTCCCGAACTTTCAATTGTCTCAAGTTC 1200 consensus_9343#1 ------------------------------------------------------------ consensus_9343#0 CTTTGTAACTTGAGGTGCTAACGCAATCTCTTCCATCGCTT 1241 consensus_9343#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||