These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9359#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 425 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTCCAAGAAGTTTGGTCAATAATTTATTTTTTGTGTTCCACAGGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTCCACGTTTTTTTACATAGATATAGACAACCTTGCCACCAGGAGTTTTAACTTTCTTTCTC-TTGTTAGAATTAGTATTATACGACAACCTACGCCTCAAAGTTAACCGCTGCATGCTGGTCAACCAACA] [+] EMBL AI395044 [TTTTTTTTTTTTTTTTTTTTTTTTTTCCAAGAAGTTTGGTCAATAATTTATTTTTTGTGTTCTACAGGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTCCACGTTTTTTTACATAGATATAGACAACCTTGCCACCAGGAGTTTTAACTTTCTTTCTCTTTGTTAGAATTAGTATTATACGACAACCTACGCCTCAGAGTTAAACGCTGCATGCT ] [+] EMBL AI395127 [ TTTTTTTTTTTTTTTTTTTTCCAAGAAGTTTGGTCAATAATTTATTTTTTGTGTTCCACAGGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTCCACGTTTTTTTACATAGATATAGACAACCTTGCCACCAGGAGTTTTAAC TTCTTTCTC TTGTGAAAATTAGTA TATTCGA AAACTACG CTCAAAGTTAACCtggaaggtg ] [-] EMBL CD140545 [ TCCAAGAAGTTTGGTCAATAATTTATTTTTTGTGTTCCACAGGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTCCACGTTTTTTTACATAGATATAGACAACCTTGCCACCAGGAGTTTTA ] [+] EMBL CD146315 [ TTTGTGTTCCACAGGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTC ] [-] EMBL CD185501 [ AGGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTCCACGTTTTTTTACATAGATATAGACAACCTTGCCACCAGGAGTTTTAACTTTCTTTCTC TTGTTAGAATTAGTATTATACGACAACCTACGCCTCAAAGTTAACCGCTGCATGCTGGTCAACCAACA] [-] EMBL CD133908 [ GGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTCCACGTTTTTTTACATAGATATAGACAGCCTTGCCACCAGGAGTTTTAACTTTCTTTCTC TTGTTAGAATTAGTATTATACGACAACCTACGCCTCAAAGTTAACCGCTGCATGCTGGTCAACCAACA] [-] EMBL CD185281 [ GGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTCCACGTTTTTTTACATAGATATAGACAACCTTGCCACCAGGAGTTTTAACTTTCTTTCTC TTGTTAGAATTAGTATTATACGACAACCTACGCCTCAAAGATAACCGCTGCATGCTGGTCAACCAACA] [+] EMBL CD138467 [ CCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTCCACGTTTTTTTACATAGATATAGACAACCTTGCCACCAGGAGTTTTAACTTTCTTTCTC TTGTTAGAATTAGTATTATACGACAACCTACGCCTCANAGTTAA ] consensusID : consensus_9359#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence [GGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGNGGAACGTTCACAAGAATCG] [+] EMBL CD196283 [GGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGNGGAACGTTCACAAGAATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9359#0 TTTTTTTTTTTTTTTTTTTTTTTTTTCCAAGAAGTTTGGTCAATAATTTATTTTTTGTGT 60 consensus_9359#1 ------------------------------------------------------------ consensus_9359#0 TCCACAGGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTT 120 consensus_9359#1 --------GGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTT 52 **************************************************** consensus_9359#0 TGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAG 180 consensus_9359#1 TGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAG 112 ************************************************************ consensus_9359#0 CCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGT 240 consensus_9359#1 CCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGT 172 ************************************************************ consensus_9359#0 CTGGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTC-C 299 consensus_9359#1 CTG-ATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGNGGAACGTTCAC 231 *** ******************************************** ********* * consensus_9359#0 ACGTTTTTTTACATAGATATAGACAACCTTGCCACCAGGAGTTTTAACTTTCTTTCTCTT 359 consensus_9359#1 AAGAATCG---------------------------------------------------- 239 * * * consensus_9359#0 GTTAGAATTAGTATTATACGACAACCTACGCCTCAAAGTTAACCGCTGCATGCTGGTCAA 419 consensus_9359#1 ------------------------------------------------------------ consensus_9359#0 CCAACA 425 consensus_9359#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||