These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1052 fasta sequence [CTCGCGGCCAGNAATTCGGTCCGAGGGCATGTTTTA-GGTTGCCTGAAGAGTGAATGGTGCTTAATTTTGATGGGAAGAGATATAATTGCGAGAAGTCGTCGATATACGTATTCGCTCAATGGTTCTCTACAAGTTCATTTGTTAAGAGTATCGCGGATGATTTCAAAAAAAGTCAGTCAATCAACGTTGAGGATTGTCTTTCCTCAGTTTATGTTCATCAAGGTGAAATGGCCACTATACCATTACTGGCTACCAATGTACCTACAAGCAATATCATTCCAGAATACACAACTTCTGATGATGCAACATCCTGTTACATTGTTGTCTTGCGTTGTTCACTCGGTTGTTCGATAGGACATCTGGATACTCCATTGCGCGTCAGGTCATTTTTCAGAAATTCTGAACGTTTCTTCTTTTCAAAAGGAAGTGTTAACGTCACAGTCCACATAGTCGGGGGTTTTCCAGATCCACGAAACATCTCACATTCTATACTAGTTGAAATACTTTCATCGCTCACATGTAATGATCACAGTTATGAACTTGGAGTATGCTGTATCGGTGAAAATAATATCCTTAGCTCTAGTGGTGAAAAATCACAACCTGCTATTTTGGGTGTTATCTTCAGTATTAAAACCAACCAAATAAACCCAGCTCGTATAAGTTGGAAAGCACGTGGGCCTGTTCCTGTGTTAAGACTTTTACGCCTAGAATGTGTAGATTCAGATGAAATAACTAACGTATTCAACCCGGAAAGGGGTTATCTAATTATAAATCCTT-TCCTGTACGTCCGCCCAGCTTTTGTGAATGCGCAAATCACATCTGAAGAAATGCGAGCTAAGTCCACAACACCTGAGCAAGAACCTGCAACATACTTTGAAGGTCAGATTGCTGTGCACCGCATAAGGTTTCACTGCCCTAACTCACTACGTTGGTTTGAACGTGGTCCACTGATGTTCCGTTGTGTTCTAGATTCAAATAAACCGTGGGTCCCTTTAAATGAAGCTTCTGCAGTTGCATCAGAAGACCCTTTAACAAACGTTAAAATATAACCT] [+] EMBL CD077930 [CTCGCGGCCAGNAATTCGGTCCGAGGGCATGTTTTA GGTTGCCTGAAGAGTGAATGGTGCTTAATTTTGATGGGAAGAGATATAATTGCGAGAAGTCGTCGATATACGTATTCGCTCAATGGTTCTCTACAAGTTCATTTGTTAAGAGTATCGCGGATGATTTCAAAAAAAGTCAGTCAATCAACGTTGAGGATTGTCTTTCCTCAGTTTATGTTCATCAAGGTGAAATGGCCACTATACCATTAC ] [+] EMBL SMAA8332 [ TGTTGCATGGTTGCCTGAAGAGTGAATGGTGCTTAATTTTGATGGGAAGAGATATAATTGCGAGAAGTCGTCGATATACGTATTCGCTCAATGGTTCTCTACAAGTTCATTTGTTAAGAGTATCGCGGATGATTTCAAAAAAAGTCAGTCAATCAACGTTGAGGATTGTCTTTCCTCAGTTTATGTTCATCAAGGTGAAATGGCCACTATACCATTACTGGCTACCAATGTACCTACAAGCAATATCATTCCAGAATACACAACTTCTGATGATGCACCGCCCTGTAAC ] [+] EMBL CD083047 [ AAGAGTGAATGGTGCTTAATTTTGATGGGAAGAGATATAATTGCGAGAAGTCGTCGATATACGTATTCGCTCAATGGTTCTCTACAAGTTCATTTGTTAAGAGTATCGCGGATGATTTCAAATAAAGTCAGTCAATCAACGTTGAGGATTGTCTTTCCTCAGTTTATGTTCATCAAGGTGAAATGGCCACTATACCATTACTGGCTACCAATGTACCTACAAGCAATATCATTCCAGAATACACAACTTCTGATGATGCAACATCCTGTTACATTGTTGTCTTGCGTTGTTCACTCGGTTGTTCGATAGGACATCTGGATACTCCATTGCGCGTCAGGTCATTTTTCAGAAATTCTGAACGTTTCTTCTTTTCAAAAGGAAGTGTTAACGTCACAGTCCACATAGTCGGGGGTTTTCCAGATCCACGAAACATCTCACATTCTATACTAGTTGAAATACTTTCATCGCTCACATGTAATGATCACAGTTATGAACTTGGAGTATGCTGTATCGGTGAAAATAATATCCTTAGCTCTAGTGGTGAAAAATCACAACCTGCTATTTTGGGTGTTATCTTCAGTATTAAAACCCACCCAATAAc ] [+] EMBL CD084290 [ acgaggcTTCCTCAGTTTATGTTCATCAAGGTGAAATGGCCACTATACCATTACTGGCTACCAATGTACCTACAAGCAATATCATTCCAGAATACACAACTTCTGATGATGCAACATCCTGTTACATTGTTGTCTTGCGTTGTTCACTCGGTTGTTCGATAGGACATCTGGATACTCCATTGCGCGTCAGGTCATTTTTCAGAAATTCTGAACGTTTCTTCTTTTCAAAAGGAAGTGTTAACGTCACAGTCCACATAGTCGGGGGTTTTCCAGATCCACGAAACATCTCACATTCTATACTAGTTGAAATACTTTCATCGCTCACATGTAATGATCACAGTTATGAACTTGGAGTATGCTGTATCGGTGAAAATAATATCCTTAGCTCTAGTGGTGAAAAATCACAACCTGCTATTTTGGGTGTTATCTTCAGTATTAAAACCAACCAAATAAACCCAGCTCGTATAAGTTGGAAAGCACGTGGGCCTGTTCCTGTGTTAAGACTTTTACGCCTAGAATGTGTAGATTCAGAT ] [-] EMBL CD077335 [ TTTTCAGAAATTCTGAACGTTTCTTCTTTTCAAAAGGAAGTGTTAACGTCACATTCCACATAGTCGGGGGTTTTCCAGATCCACGAAACATCTCACATTCTATACTAGTTGAAATACTTTCATCGCTCACATGTAATGATCACAGTTATGAACTTGGAGTATGCTGTATCGGTGAAAATAATATCCTTAGCTCTAGTGGTGAAAAATCACAACCTGCTATTTTGGGTGTTATCTTCAGTATTAAAACCAACCAAATAAACCCAGCTCGTATAAGTTGGAAAGCACGTGGGCCTGTTCCTGTGTTAAGACTTTTACGCCTAGAATGTGTAGATTCAGATGAAATAACTAACGTATTCAACCCGGAAAGGGGTTATCTAATTATAAATCCTT TCCTGTACGTCCGCCCAGCTTTTGTGAATGCGCAAATCACATCTGAAGAAATGCGAGCTAAGTCCACAACACCTGAGCAAGAACCTGCAACATACTTTGAAGGTCAGATTGCTGTGCACCGCATAAGGTTTCACTGCCCTAACTCACTACGTTGGTTTGAACGTGGTCCACTGATGTTCCGTTGTGTTCTAGATTCAAATAAACCGTGGGTCCCTTTAAATGAAGCTTCTGCAGTTGCATCAGAAGACCCTTTAACAAACGTTAAAATATAACCT] [-] EMBL SMAA25712 [ TAAANCCANCCAAATAAACCCAGCTCGTATAAGTTGGAAAGCACGTGGGCCTGTTCCTGTGTTAAGACTTTTACGCCTAGAATGTGTAGATTCAGATGAAATAACTAACGTATTCAACCCGGAAAGGGGTTATCTAATTATAAATCCTT TCCTGTACGTCCGCCCAGCTTTTGTGAATGCGCAAATCACATCTGAAGAAATGCGAGCTAAGTCCACAACACCTGAGCAAGAACCTGCAACATACTTTGAAGGTCAGATTGCTGTGCACCGCATAAGGTTTCACTGCTCTAACTCACTACGTTGGTTTGAACGTGGTCCACTGATGTTCCGTTGTGTTCTAGATTCAAATAAACCGTGGGTCCCTTTAAATGAAGCTTCTGCAGTTGCATCAGAAGACCCTTTAACAAACGTTAAAATATAACCT] [-] EMBL BG932726 [ CTGTTCCTGTGTTAAGACTTTTACGCCTAGAATGTGTAGATTCAGATGAAATAACTAACGTATTCAACCCGGAAAGGGGTTATCTAATTATAAATCCTT TCCTGTACGTCCGCCCAGCTTTTGTGAATGCGCAAATCACATCTGAAGAAATGCGAGCTAAGa ] [+] EMBL BG932694 [ gCTGTTCCTGTGTTAAGACTGTTACGCCTATAATGTGTACATTCAGATGAAATAACTAACGTATTCAACCCGGAAAGGGGTTATCTAATTATAAATCCTTATCCTGTACGTCCGCCCAGCTTTTGTGAATGCGCAAAT ] consensusID : consensus_9363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [CCGCGCACACCAAATAAAAGGGGCGTATTGTTACTTTAAAAAAAAGGGGGGTTCGCCCAACGGTTCTCAATATTAGGGGCACAAACAAGAATAAAAAATTTTCTTTTTTTTAGAGCCCAATTAAAAATTTTTTGGTCGATCACTGTGTAAGGTTCGCAGTAAAAACCCCCAATTTTAGGTATCGGGAAAATTTTTTCCGGAAGCTGTATTGATGAAAAATCGCATCTTNCGAGATTGGGTGTTATATACAGTATTAAAACCACCCAAATAAACCCAGNTTGTATAAGTTGAAAAGCACGTGGGCCTGTTCCTGTGTTAAGACTTTTACGCCTAGAATGTGTAGATTCAGATGAAATAACTAACGTATTCAACCCGGAAAGGGGTTATCTAATTATAAATCCTTTCCTGTACGTCCGCCCAGCTTTTGTGAATGCGCAAATCACATCTGAAGAAATGCGAGCTAAGTCCACAACACCTGAGCAAGAACCTGCAACATACTTTGAAGGTCAGATTGCTGTGCACCGCATAAGGTTTCACTGCCCTAACTCACTACGTTGGTTTGAACGTGGTCCACTGATGTTCCGTTGTGTTCTAGATTCAAATAAACCGTGGGTCCCTTTAAATGAAGCTTCTGCAGTTGCATCAGAAGACCCTTTAACAAACGTTAAAATATAACCTCA] [-] EMBL CD076869 [CCGCGCACACCAAATAAAAGGGGCGTATTGTTACTTTAAAAAAAAGGGGGGTTCGCCCAACGGTTCTCAATATTAGGGGCACAAACAAGAATAAAAAATTTTCTTTTTTTTAGAGCCCAATTAAAAATTTTTTGGTCGATCACTGTGTAAGGTTCGCAGTAAAAACCCCCAATTTTAGGTATCGGGAAAATTTTTTCCGGAAGCTGTATTGATGAAAAATCGCATCTTNCGAGATTGGGTGTTATATACAGTATTAAAACCACCCAAATAAACCCAGNTTGTATAAGTTGAAAAGCACGTGGGCCTGTTCCTGTGTTAAGACTTTTACGCCTAGAATGTGTAGATTCAGATGAAATAACTAACGTATTCAACCCGGAAAGGGGTTATCTAATTATAAATCCTTTCCTGTACGTCCGCCCAGCTTTTGTGAATGCGCAAATCACATCTGAAGAAATGCGAGCTAAGTCCACAACACCTGAGCAAGAACCTGCAACATACTTTGAAGGTCAGATTGCTGTGCACCGCATAAGGTTTCACTGCCCTAACTCACTACGTTGGTTTGAACGTGGTCCACTGATGTTCCGTTGTGTTCTAGATTCAAATAAACCGTGGGTCCCTTTAAATGAAGCTTCTGCAGTTGCATCAGAAGACCCTTTAACAAACGTTAAAATATAACCTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9363#0 CTCGCGGCCAGNAATTCGGTCCGAGGGCATGTTTTAGGTTGCCTGAAGAGTGAATGGTGC 60 consensus_9363#1 ------------------------------------------------------------ consensus_9363#0 TTAATTTTGATGGGAAGAGATATAATTGCGAGAAGTCGTCGATATACGTATTCGCTCAAT 120 consensus_9363#1 ------------------------------------------------------------ consensus_9363#0 GGTTCTCTACAAGTTCATTTGTTAAGAGTATCGCGGATGATTTCAAAAAAAGTCAGTCAA 180 consensus_9363#1 ------------------------------------------------------------ consensus_9363#0 TCAACGTTGAGGATTGTCTTTCCTCAGTTTATGTTCATCAAGGTGAAATGGCCACTATAC 240 consensus_9363#1 ------------------------------------------------------------ consensus_9363#0 CATTACTGGCTACCAATGTACCTACAAGCAATATCATTCCAGAATACACAACTTCTGATG 300 consensus_9363#1 ------------------------------------------------------------ consensus_9363#0 ATGCAACATCCTGTTACATTGTTGTCTTGCGTTGTTCACTCGGTTGTTCGATAGGACATC 360 consensus_9363#1 ------------------------------------------------------------ consensus_9363#0 TGGATACTCCATTGCGCGTCAGGTCATTTTTCAGAAATTCTGAACGTTTCTTCTTTTCAA 420 consensus_9363#1 -------------------CCGCGCACACCAAATAAAAGGGGCGTATTGTTACTTTAAAA 41 * * ** * *** * ** * **** ** consensus_9363#0 AAG-GAAGTGTTAACGTCACAGTCCACATAGTCGGGGGTTTTC-CAGATCCACGAAACAT 478 consensus_9363#1 AAAAGGGGGGTTCGCCCAACGGTTCTCAATATTAGGGGCACAAACAAGAATAAAAAATTT 101 ** * * *** * ** ** * ** * **** ** * *** * consensus_9363#0 CTCACATTCTATA--CTAGTTGAAA-TACTTTCATCGCTCAC-ATGTAATGATCACAGTT 534 consensus_9363#1 TCTTTTTTTTAGAGCCCAATTAAAAATTTTTTGGTCGATCACTGTGTAAGGTTCGCAGT- 160 ** ** * * * ** *** * *** *** **** ***** * ** **** consensus_9363#0 ATGAACTTGGAGTATGCTGTATCGGTGAAAATAATATCCTTAGCTCTAGTGGTGAAAAAT 594 consensus_9363#1 AAAAACCCCCAATTTTAGGTATCGGGAAAATTTTTTCCGGAAGCTGTATTGATGAAAAAT 220 * *** * * * ******* *** * * * **** ** ** ******** consensus_9363#0 CACAACCTGCTATTTTGGGTGTTATCTTCAGTATTAAAACCAACCAAATAAACCCAGCTC 654 consensus_9363#1 CGCATCTTNCGAGATTGGGTGTTATATACAGTATTAAAACCACCCAAATAAACCCAGNTT 280 * ** * * * * *********** * ************** ************** * consensus_9363#0 GTATAAGTTGGAAAGCACGTGGGCCTGTTCCTGTGTTAAGACTTTTACGCCTAGAATGTG 714 consensus_9363#1 GTATAAGTTGAAAAGCACGTGGGCCTGTTCCTGTGTTAAGACTTTTACGCCTAGAATGTG 340 ********** ************************************************* consensus_9363#0 TAGATTCAGATGAAATAACTAACGTATTCAACCCGGAAAGGGGTTATCTAATTATAAATC 774 consensus_9363#1 TAGATTCAGATGAAATAACTAACGTATTCAACCCGGAAAGGGGTTATCTAATTATAAATC 400 ************************************************************ consensus_9363#0 CTTTCCTGTACGTCCGCCCAGCTTTTGTGAATGCGCAAATCACATCTGAAGAAATGCGAG 834 consensus_9363#1 CTTTCCTGTACGTCCGCCCAGCTTTTGTGAATGCGCAAATCACATCTGAAGAAATGCGAG 460 ************************************************************ consensus_9363#0 CTAAGTCCACAACACCTGAGCAAGAACCTGCAACATACTTTGAAGGTCAGATTGCTGTGC 894 consensus_9363#1 CTAAGTCCACAACACCTGAGCAAGAACCTGCAACATACTTTGAAGGTCAGATTGCTGTGC 520 ************************************************************ consensus_9363#0 ACCGCATAAGGTTTCACTGCCCTAACTCACTACGTTGGTTTGAACGTGGTCCACTGATGT 954 consensus_9363#1 ACCGCATAAGGTTTCACTGCCCTAACTCACTACGTTGGTTTGAACGTGGTCCACTGATGT 580 ************************************************************ consensus_9363#0 TCCGTTGTGTTCTAGATTCAAATAAACCGTGGGTCCCTTTAAATGAAGCTTCTGCAGTTG 1014 consensus_9363#1 TCCGTTGTGTTCTAGATTCAAATAAACCGTGGGTCCCTTTAAATGAAGCTTCTGCAGTTG 640 ************************************************************ consensus_9363#0 CATCAGAAGACCCTTTAACAAACGTTAAAATATAACCT-- 1052 consensus_9363#1 CATCAGAAGACCCTTTAACAAACGTTAAAATATAACCTCA 680 ************************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||