These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9366#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 647 fasta sequence [ACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGAATGATGTTGACAGGTTTGTTGGCGCCTGCAGGTTTGATTGCTCTGGCGATGAAGTCGACGTCCTCGAGACCAGGAGATGTGGTGTGTCAGTCGACGAGTGCTTCGGAGCCAGTTGTAGATGTTGGTGTGGGAAGGTTGTCTGAGGTTGGATCTGTCGTTGGTACGGGTGATTCATTGTGTGTGGATGGGATTGGTGCAAGTGTGGTCGACATGAAGAGCGATCAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACAATATTGATTTTTCTGTTTCTCCGCTCTTGTCGCTTTCTGGTTTTTCACGTCCTGCATTTGTTACTAATCGTTGTTGGCGTA] [+] EMBL CD187418 [ACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGAATGATGTTGACAGGTTTGTTGGCGCCTGCGTGTTTGATTGCTCTGGCGATGAAGTCGACGTCCTCGAGACCAGGAGATGTGGTGTGTCAGTCGACGAGTGCTTCGGAGCCAGTTGTAGATGTTGGTGTGGGAAGGTTGTCTGAGGTTGGATCTGTCGTTGGTACGGGTGATTCATTGTGTGTGGATGGGATTGGTGCAAGTGTGGTCGACATGAAGAGCGATCAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTG ] [+] EMBL CD136152 [ CGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGACAGGTTTGTTGGCGCCTGCAGGTTTGATTGCTCTGGCGATGAAGTCGACGTCCTCGAGACCAGGAGATGTGGTGTGTCGGTCGACGAGTGCTTCGGAGCCAGTTGTAGATGTTGGTGTGGGAAGGTTGTCTGAGGTTGGATCTGTCGTTGGTACGGGTGATTCATTGTGTGTGGATGGGATTGGTGCAAGTGTGGTCGACATGAAGAGCGATCAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGT ] [+] EMBL CD197075 [ TTTGTTGGCGCCTGCAGGTTTGATTGCTCTGGCGATGAAGTCGACGTCCTCGAGACCAGGAGATGTGGTGTGTCAGTCGACGAGTGCTTCGGAGCCAGTTGTAGATGTTGGTGTGGGAAGGTTGTCTGAGGTTGGATCTGTCATTGGTACGGGTGATTCATTGTGTGTGGATGGGATTGGTGCAAGTGTGGTCGACATGAGGAGCGATCAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACAATATTGATTTTTCTGTTTCTCCGCTCTTGTCGCTTTCTGGTTTTTCACGTCCTGCATTTGTTACTAATCGTTGTTGGCGTA] [-] EMBL CD090037 [ TGGGGAGGTTGTCTGAGGTTGGATCTGTCGTTGGTACGGGTGATTCATTGTGTGTGGATGGGATTGGTGCAAGTGTGGTCGACATGAAGAGCGATCAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGGACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACAATATTGATTTTTCTGTTTCTCCGCTCTTGTCGCTTTCTGGTTTTTCACGTCCTGCATTTGTTACTAAT ] consensusID : consensus_9366#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 536 fasta sequence [GCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAGATGGTGTTGTGATGGGTGTGGGTTCGACGAGTGTATCCGAGTTGTTGTCCGACATGACAGAGAGACGAGGTGTGGACAGTGGTTTGGATTCGGACATGCTGTCGTCAGATGGTGTTAGGTATGGAGAAGTGTCTGTTCTGCCTGAGAAGCGTGGACTTCAGTTGTCTGAGGTTGGATCTGTCGTTGGTACGGGTGATTCATTGTGTGTGGATGGGATTGGTGCAAGTGTGGTCGACATGAAGAGCGATCAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGAT] [+] EMBL CD084897 [GCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAGATGGTGTTGTGATGGGTGTGGGTTCGACGAGTGTATCCGAGTTGTTGTCCGACATGACAGAGAGACGAGGTGTGGACAGTGGTTTGGATTCGGACATGCTGTCGTCAGATGGTGTTAGGTATGGAGAAGTGTCTGTTCTGCCTGAGAAGCGTGGACTTCAGTTGTCTGAGGTTGGATCTGTCGTTGGTACGGGTGATTCATTGTGTGTGGATGGGATTGGTGCAAGTGTGGTCGACATGAAGAGCGATCAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGAT] [+] EMBL CD085010 [ GACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAGGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAGATGGTGTTGTGATGGGTGTGGGTTCGACGAGTGTATCCGAGTTGTTGTCCGACATGACAGAGAGACGAGGTGTGGACAGTGGTTGGGATTCGGACATGCTGTCGTCAGATGGTGTTAGGTATGGAGAAGTGTCTGTTCTGCCTGAGAAGCGTGGACTTCAGTTGTCTGAGGTTGGATCTGTCGTTGGTACGGGTGATTCATTGTGTGTGGATGGGATTGGAGCAAGTGTGGTCGACATGAAGAGCGATCAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGAT] consensusID : consensus_9366#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence [GCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAGATGGTGTTGTGATGGGATTGGTGCAAGTGTGGTCGACATGAAGAGCGATCAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAGA] [+] EMBL CD084888 [GCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAGATGGTGTTGTGATGGGATTGGTGCAAGTGTGGTCGACATGAAGAGCGATCAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAGA] consensusID : consensus_9366#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [CAAACAATAAGAAGTCGTTTAAATCAAACAATGGAACAAGTTAAAACAACTGATCCTAATAAATTACGATTAACACAATCGGAATTGAAACAAACTGATATTTTAGATAATCGGCATGAAGAGCGATCAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAG] [-] EMBL CD146494 [CAAACAATAAGAAGTCGTTTAAATCAAACAATGGAACAAGTTAAAACAACTGATCCTAATAAATTACGATTAACACAATCGGAATTGAAACAAACTGATATTTTAGATAATCGGCATGAAGAGCGATCAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAG] consensusID : consensus_9366#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [TGACTGTCTTCACCAGTATTTGTTGGTTTGTATGTGGTTGAAGAGCTAAATCATCTGTGTCTTGATGAGTTTTCCGTCCTTTTAATCTGTTGGTGATTGTTCTTCCTCCCAAACCTGAATAGAACGTGGAGCATGTCTGTAATCACTTCTATATCTGACTTCATCGTCTCAGCTTGTCTGTTGTCAAGCCCTGCTGCTTTCCCATACCTGATTTGTCTGATGGCCATCCTGATATCTTCGATCGTTAGTGGAGTGACAGGTTTAGGAAGGTTTGTGTATACTGCTTCAACGTCCGGTGAGTTCAGTGTGTCTGGTCTATTCAAGAGTTCTCCAAAGTGTTCCACTCACCTGTTCCTCTGT] [+] EMBL CD187037 [TGACTGTCTTCACCAGTATTTGTTGGTTTGTATGTGGTTGAAGAGCTAAATCATCTGTGTCTTGATGAGTTTTCCGTCCTTTTAATCTGTTGGTGATTGTTCTTCCTCCCAAACCTGAATAGAACGTGGAGCATGTCTGTAATCACTTCTATATCTGACTTCATCGTCTCAGCTTGTCTGTTGTCAAGCCCTGCTGCTTTCCCATACCTGATTTGTCTGATGGCCATCCTGATATCTTCGATCGTTAGTGGAGTGACAGGTTTAGGAAGGTTTGTGTATACTGCTTCAACGTCCGGTGAGTTCAGTGTGTCTGGTCTATTCAAGAGTTCTCCAAAGTGTTCCACTCACCTGTTCCTCTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9366#0 --ACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGA 58 consensus_9366#1 GCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTG 60 consensus_9366#2 ------------------------------------------------------------ consensus_9366#3 ------------------------------------------------------------ consensus_9366#4 ------------------------------------------------------------ consensus_9366#0 GTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCG-GTGATG-AATC---TGAGGGTGT 113 consensus_9366#1 GTGTGGATATGGACG--ATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGT 118 consensus_9366#2 ------------------------------------------------------------ consensus_9366#3 ------------------------------------------------------------ consensus_9366#4 ------------------------------------------------------------ consensus_9366#0 TGTGTCATC----AGAGACAAT-TTCTGATTACGGTGTATCTGGTGTGGATATGAATGAT 168 consensus_9366#1 TTTGTCGTCGAGCAGAGATGGTGTTGTGATGGGTGTGGGTTCGACGAGTGTATCCGAGTT 178 consensus_9366#2 ------------------------------------------------------------ consensus_9366#3 ------------------------------------------------------------ consensus_9366#4 ------------------------------------------------------------ consensus_9366#0 GTTGACAGGTTTGTTGGCGCCTGCAGGTTTGATTGCTCTGGCGATGAAGTCGACGTCCTC 228 consensus_9366#1 GTTGTCCGACATGACAGAGAGACGAGGTGTGG--ACAGTGGTTTGGATTCGGACATGCT- 235 consensus_9366#2 ----------------GCGGTGATGAATCTGAG-GGTGTTGTGTCATCAGAGACAATTT- 42 consensus_9366#3 ------------------------------------------------------------ consensus_9366#4 ------------------------------------------------------------ consensus_9366#0 GAGACCAGGAGATGTGGTGTGTCAGTCGACGAGTGCTTCGGAGCCAGTTGTAGATGTTGG 288 consensus_9366#1 GTCGTCAGATGGTGTTAGGT----ATGGAGAAGTGTCT---GTTCTGCCTGAGAAGC--G 286 consensus_9366#2 CTGATTACGGTGTATCTGGT----GTGGATATGGACGAT--GTTGATGTGAAGAGGC--G 94 consensus_9366#3 ----------------------CAAACAATAAGAAGTC---GTTTAAATCAAACAATGGA 35 consensus_9366#4 -----------------TGACTGTCTTCACCAGTATTT---GTTGGTTTGTATGTGGTTG 40 * * * consensus_9366#0 TGTGGGAAGGTTGTCTGAGGTTGG----ATCTGTCGTTGGTACGGGTGATTCATTGTGTG 344 consensus_9366#1 TGGACTTCAGTTGTCTGAGGTTGG----ATCTGTCGTTGGTACGGGTGATTCATTGTGTG 342 consensus_9366#2 AGTGATGCAAACGAGTGAGGGTGT-----TTTGTCGTCGAGCAGAG------ATGGTGTT 143 consensus_9366#3 ACAAGTTAAAACAACTGATCCTAAT--AAATTACGATTAACACA--------ATCGGAAT 85 consensus_9366#4 AAGAGCTAAATCATCTGTGTCTTGATGAGTTTTCCGTCCTTTTAAT-------CTGTTGG 93 ** * * * * consensus_9366#0 TGGATGGGATTGGTGCAAGTG-TGGTCGACATGAAGAGCGATCAACTGGAGTCGGCGACT 403 consensus_9366#1 TGGATGGGATTGGTGCAAGTG-TGGTCGACATGAAGAGCGATCAACTGGAGTCGGCGACT 401 consensus_9366#2 GTGATGGGATTGGTGCAAGTG-TGGTCGACATGAAGAGCGATCAACTGGAGTCGGCGACT 202 consensus_9366#3 TGAAACAAACTGATATTTTAGATAATCGGCATGAAGAGCGATCAACTGGAGTCGGCGACT 145 consensus_9366#4 TGATTGTTCTTCCTCCCAAACCTGAATAGAACGTGGAGCA--TGTCTGTAATC----ACT 147 * * * * * **** *** * ** *** consensus_9366#0 CGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTC 463 consensus_9366#1 CGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTC 461 consensus_9366#2 CGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTC 262 consensus_9366#3 CGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTC 205 consensus_9366#4 TCTATATCTGACTTCATCGTCTCAGCT-TGTCTGTTGTCAAGCCCTGC----TGCTTTCC 202 * *** ***** ** * *** * ** ** * * * * ** ** * consensus_9366#0 GAT-CGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATC 522 consensus_9366#1 GAT-CGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATC 520 consensus_9366#2 GAT-CGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATC 321 consensus_9366#3 GAT-CGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATC 264 consensus_9366#4 CATACCTGATTTGTCTGATGGCCATCCTGATATCTTCGATCGTTAGTGGAGTGACAGGTT 262 ** * *** ** * * *** * ** * ** * ** * consensus_9366#0 AGAGACAATTTCTGATTACGGTGT----ATCTGGTGTGGATATGGACAATATTGATTTTT 578 consensus_9366#1 AGAGACAATTTCTGAT-------------------------------------------- 536 consensus_9366#2 AGAGACAATTTCTGATTACGGTGT----ATCTGGTGTGGATATGGACGATGTTGATGTGA 377 consensus_9366#3 AGAGACAATTTCTGATTACGGTGT----ATCTGGTGTGGATATGGACGATGTTGATGTGA 320 consensus_9366#4 TAGGAAGGTTTGTGTATACTGCTTCAACGTCCGGTGAGTTCAGTGTGTCTGGTCTATTCA 322 ** *** ** consensus_9366#0 CTGTTTCTCCGCTCTTGTCGCTTTCTGGTTTTTCACGTCCTGCATTTGTTACTAATCGTT 638 consensus_9366#1 ------------------------------------------------------------ consensus_9366#2 AGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAGA----------- 426 consensus_9366#3 AGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAG------------ 368 consensus_9366#4 AGAGTTCTCCAAAGTGTTCCACTCACC-TGTTCCTCTGT--------------------- 360 consensus_9366#0 GTTGGCGTA 647 consensus_9366#1 --------- consensus_9366#2 --------- consensus_9366#3 --------- consensus_9366#4 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||