These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9384#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 603 fasta sequence [GNTAACACATTCTATTAATGACTCTTCTTCTTCACTATACAAGTCAGATACCAAG-TTCAGCAAAA-ACCCGTCGTATTGACTTCTTTGTAGTTCGCCTTTTATGTTGAAGAACNCCGCTGCAGACTTTT-CAACGGANAGCGTCCTGACTTTTTTGGTAATACCGTCACACACCGTTAAGCTTAAATGATATATGGGATCATACTTGTTCATGTATGAGCATACTGTCCATGAGTCAGCTGGATCTAATCCTGTCTTATCTTCTTTGAGTCCAGTGAAGAAGACATTCTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGT-AACACAGACTATTAGTACTG-TTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGATTAAACCATGCTTTTTCATGAATAACTCTTTAGCTGCATCATCAAGTGCTATTTTTAGTGCACCAGTATCCCATTTATTAACTGCGACCTCTTTCGGAGTCTCACAAGACATTTCACATTATTGACGTGA] [-] EMBL SM7451 [GNTAACACATTCTATTAATGACTCTTCTTCTTCACTATACAAGTCAGATACCAAGTTTCAGCAAAAGACCCGTCGTATTGACTTCTTTGTAGTTCGCCTTTTATGTTGAAGAACNCCGCTGCAGACTTTTNCAACGGANAGCGTCCTGACTTTTTTGGTAATACCGTCACACACCGTTAAGCTTAAATGATATATGGGATCATACTTGTTCATGTATGAGCATACTGTCCATGAGTCAGCTGGATCTAATCCTGTCTTATCTTCTTTGAGTCCAGTGCAGAAGACATTCTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGNAGAAGTAAAGTGTAAACACAGACTATTAGTACTGTTTCGAGAGTGGGGATGTGGNCCCCCATNATCGAA ] [-] EMBL CD116509 [ GATACCAAG TTCAGCAAAA ACCCGTCGTATTGACTTCTTTGTAGTTCGCCTTTTATGTTGAAGAACTCCGCTGCAGACTTTT CAACGGAAAGCGTCCTGACTTTTTTGGTAATACCGTCACACACCGTTAAGCTTAAATGATATATGGGATCATACTTGTTCATGTATGAGCATACTGTCCTTGAGTCAGCTGGATCTAATCCTGTCTTATCTTCTTTGAGTCCAGTGAAGAAGACATTCTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGT AACACAGACTATTAGTA ] [+] EMBL CD188980 [ TAATACCGTCACACACCGTTAAGCTTAAATGATATATGGGATCATACTTGTTCATGTATGAGCATACTGTCCATGAGTCAGCTGGATCTAATCCTGTCTTATCTTCTTTGAGTCCAGTGAAGAAGACATTCTTCTAAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGT AACACAGACTATTAGTACTG TTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGATATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGAGCGTATCGATTAAACCATGCTTTTTCATGAATAACTCTTTAGCTGCATCATCAAGTGCTATTTTTAGTGCACCAGTATCCCATTGATTAACTGCGACCTCTTTCGGAGTCTCACAAGACATTTCACATTATTGACGTG ] [-] EMBL CD185119 [ TCACACACCGTTAAGCTTAAATGATATATGGGATCATACTTGTTCATGTATGAGCATACTGTCCATGAGTCAGCTGGATCTAATCCTGTCTTATCTTCTTTGAGTCCAGTGAAGAAGACATTCTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGT AACACAGACTATTAGTACTG TTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGATTAAACCATGCTTTTTCATGAATAACTCTTTAGCTGCATCATCAAGTGCTATTTTTAGTGCAC ] [-] EMBL CD133820 [ AGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGT AACACAGACTATTAGTACTG TTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGATTAAACCATGCTTTTTCATGAATAACTCTTTAGCTGCATCATCAAGTGCTATTTTTACTGCACCAGTATCCCATTTATTAACTGTGACCTCTTTCGGAGTCTCACAAGACATTTCAAATTATTGACGTGA] [+] EMBL CD141680 [ TACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGATTAAACCATGCTTTTTCATGAATAACTCTTTAGCTGCATCATCAAGTGCTATTTTTAGTGCACCAGTATCCCATTTA ] consensusID : consensus_9384#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [TTGATGCCCCTTTTTTGAGAGACCCGCTGAAATTTTCACCGGAGGGCTCTACTTTTTGGGAATACCGCACCCCCCGTTACGTAAATGTATATGGGACAATACTTGTCATGTGTGAGCATACTGCCATGGGGCAGCTGGATCTATCCTGTCTTATCTTCTTTGAGTCCAAGGTAGAGAAGACATTCTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTTAACACAGACTATTAGTACTGTCCGAGGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGGATTAAACCATGCTTTTTCATGAATAACTCTTTAGCTGCTATCATCAAGTGCT] [-] EMBL AI764954 [TTGATGCCCCTTTTTTGAGAGACCCGCTGAAATTTTCACCGGAGGGCTCTACTTTTTGGGAATACCGCACCCCCCGTTACGTAAATGTATATGGGACAATACTTGTCATGTGTGAGCATACTGCCATGGGGCAGCTGGATCTATCCTGTCTTATCTTCTTTGAGTCCAAGGTAGAGAAGACATTCTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTTAACACAGACTATTAGTACTGTCCGAGGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGGATTAAACCATGCTTTTTCATGAATAACTCTTTAGCTGCTATCATCAAGTGCT] consensusID : consensus_9384#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [CAGCTGGATCTAATCCTGTCTTATCTTCTTTGAGTCCAGTGAAGAAGACATTCTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGTAACACAGACTATTAGTACTGTTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGATTAAACCATGCTTTTTCATGAATAACTACGAAACATTATTTAGAACCTGCATTACCTCTTTAGCTGCATCATCAAGTGCTATT] [+] EMBL CD187039 [CAGCTGGATCTAATCCTGTCTTATCTTCTTTGAGTCCAGTGAAGAAGACATTCTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGTAACACAGACTATTAGTACTGTTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGATTAAACCATGCTTTTTCATGAATAACTACGAAACATTATTTAGAACCTGCATTACCTCTTTAGCTGCATCATCAAGTGCTATT] consensusID : consensus_9384#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [CTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGTAACACAGACTATTAGTACTGTTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGATTAAACCATGCTCTTTAGCTGCATCATCAAGTGCTATTTTTAGTGCACCAGTATCCCATTTATTAACTGTGACCTCTTTCGGAGTCTCCTCGTGCCGA] [-] EMBL CD077420 [CTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGTAACACAGACTATTAGTACTGTTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGATTAAACCATGCTCTTTAGCTGCATCATCAAGTGCTATTTTTAGTGCACCAGTATCCCATTTATTAACTGTGACCTCTTTCGGAGTCTCCTCGTGCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9384#0 GNTAACACATTCTATTAATGACTCTTCTTCTTCACTATACAAGTCAGATACCAAGTTCAG 60 consensus_9384#3 ------------------------------------------------------------ consensus_9384#1 ------------------------------------------------------------ consensus_9384#2 ------------------------------------------------------------ consensus_9384#0 CAAAAACCCGTCGTATTGACTTCTTTGTAGTTCGCCTTTTATGTTGAAGAACNCCGCTGC 120 consensus_9384#3 ------------------------------------------------------------ consensus_9384#1 -----------------------------------------TTGATGCCCCTTTTTTGAG 19 consensus_9384#2 ------------------------------------------------------------ consensus_9384#0 AGACTTTTCAACGGANAGCGTCCTGACTTTTTTGGTAATACCGTCACACACCGTTAAGCT 180 consensus_9384#3 ------------------------------------------------------------ consensus_9384#1 AGACCCGCTGAAATTTTCACCGGAGGGCTCTACTTTTTGGGAATACCGCACCCCCCGTTA 79 consensus_9384#2 ------------------------------------------------------------ consensus_9384#0 TAAATGATATATGGGATCATACTTGTTCATGTATGAGCATACTGTCCATGAGTCAGCTGG 240 consensus_9384#3 ------------------------------------------------------------ consensus_9384#1 CGTAAATGTATATGGGACAATACTTGTCATGTGTGAGCATACTGCCATGGGGCAGCTGGA 139 consensus_9384#2 ----------------------------------------------------CAGCTGGA 8 consensus_9384#0 ATCT-AATCCTGTCTTATCTTCTTTGAGTCCAGTGAAGAAGACATTCTTCTCAATATACA 299 consensus_9384#3 ----------------------------------------------CTTCTCAATATACA 14 consensus_9384#1 TCTA-TCCTGTCTTATCTTCTTTGAGTCCAAGGTAGAGAAGACATTCTTCTCAATATACA 198 consensus_9384#2 TCTAATCCTGTCTTATCTTCTTTGAGTCCA--GTGAAGAAGACATTCTTCTCAATATACA 66 ************** consensus_9384#0 TTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGTAACACAGACTATTAGTA 359 consensus_9384#3 TTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGTAACACAGACTATTAGTA 74 consensus_9384#1 TTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGT-TAACACAGACTATTAGTA 257 consensus_9384#2 TTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGTAACACAGACTATTAGTA 126 ***************************************** ****************** consensus_9384#0 CTGTTCGAG-AGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATT 418 consensus_9384#3 CTGTTCGAG-AGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATT 133 consensus_9384#1 CTGTCCGAGGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATT 317 consensus_9384#2 CTGTTCGAG-AGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATT 185 **** **** ************************************************** consensus_9384#0 AGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCG-ATTAA 477 consensus_9384#3 AGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCG-ATTAA 192 consensus_9384#1 AGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGGATTAA 377 consensus_9384#2 AGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCG-ATTAA 244 ****************************************************** ***** consensus_9384#0 ACCATGCTTTTTCATGAATAACTCTTTAGCTGC--ATCATCAAGTGCTATTTTTAGTGCA 535 consensus_9384#3 ACCATGCT---------------CTTTAGCTGC--ATCATCAAGTGCTATTTTTAGTGCA 235 consensus_9384#1 ACCATGCTTTTTCATGAATAACTCTTTAGCTGCT-ATCATCAAGTGCT------------ 424 consensus_9384#2 ACCATGCTTTTTCATGAA--------TAACTACGAAACATTATTTAGAACCTGCATTACC 296 ******** ** ** * * *** * * consensus_9384#0 CCAGTATCCCATTTATTAACTGCGACCTCTTTCGGAGTCTCACAAGACATTTCACATTAT 595 consensus_9384#3 CCAGTATCCCATTTATTAACTGTGACCTCTTTCGGAGTCTCCTCGTGCCGA--------- 286 consensus_9384#1 ------------------------------------------------------------ consensus_9384#2 TCTTTAGCTGCATCATCAAGTGCTATT--------------------------------- 323 consensus_9384#0 TGACGTGA 603 consensus_9384#3 -------- consensus_9384#1 -------- consensus_9384#2 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||