These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9391#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [TATTCTCAAAATATATTTAAAGACCTATGTGGCGGATTGGCGAAAAACAGAGGTCACTAGGATGTATGAATACCATACTGTCCCTTTTCGAAAATCCTATGTATGTTTTGCGAAAGAAATGAGTTTCAGAACGCAACACATCATTGAGTTTCAATACAATGAGATCTTGATAATTCACGTATTCGCAACATTAGTGAGTCTTTTACTAACTACCTTAAAAATCGAATTTAGAAGTTAGGCATTTCGAAAAACGTATATTACATGTGGAATCAAAATGATCCTTTTCCGGATGACAAGAAAGCAGTTGCGCCGGCAGCGAGTAACATTGATACAGAGTAATTTCTAGTTCATTAGTTAAGGAAATGAGAAACATAAAAACTATATCTCGTCATGCGTAAATTATTTTGATAAGAGCATTGCCTTGTGATTGATGTTATGAAACATCAAGCANACTTTGAAACTCAGTTTCATCTTACAACTATAACGAATGGAGGTTGTGAGATGCANAAGCTAANAAAACAATCTATTGACCCTTCACCTTTTAAAAGAACGTTGCATATCATAGTACATTCCAC] [+] EMBL CD153154 [TATTCTCAAAATATATTTAAAGACCTATGTGGCGGATTGGCGAAAAACAGAGGTCACTAGGATGTATGAATACCATACTGTCCCTTTTCGAAAATCCTATGTATGTTTTGCGAAAGAAATGAGTTTCAGAACGCAACACATCATTGAGTTTCAATACAATGAGATCTTGATAATTCACGTATTCGCAACATTAGTGAGTCTTTTACTAACTACCTTAAAAATCGAATTTAGAAGTTAGGCATTTCGAAAAACGTATATTACATGTGGAATCAAAATGATCCTTTTCCGGATGACAAGAAAGCAGTTGCGCCGGCAGCGAGTAACATTGATACAGAGTAATTTCTAGTTCATTAGTTAAGGAAATGAGAAACATAAAAACTATATCTCGTCATGCGTAAATTATTTTGATAAGAGCATTGCCTTGTGATTGATGTTATGAAACATCAAGCANACTTTGAAACTCAGTTTCATCTTACAACTATAACGAATGGAGGTTGTGAGATGCANAAGCTAANAAAACAATCTATTGACCCTTCACCTTTTAAAAGAACGTTGCATATCATAGTACATTCCAC] consensusID : consensus_9391#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 569 fasta sequence [GTTACGCAGCGATGGTTGTTAAGATTACCAAGGAGGATGAGAGACTCTTAGAAGAATACAGTCAAGCAGCATCAAAGAGTTCGGAGAAGCTAGTTTATGTTAATGCAGTCATGATATCTTCGATTCCTATCTGGTTATTTTGGGGCGTTCACAAAATGCCTCTGATAGCTAATTCATTTTTGTATCTCATCATTTCACTGGCCTCAACCTTCCTCATATCTATCGCATACAAAAATTCAAAAACACCGTTGATGGAAAGAATTGCTATCCGTCGAACCGAAGCAATTACCAAAGAAGTCAATAACGAAGCTGGTAAAGAAAAAAAGCTATCGAAGAAAAACAGAGAGGATGTTGTCCGCGAACGAACTAAAAAGGTTGCTGACTACGAATCAACGACTTTCTCAATATTTTACAATAATTGCCTATTTCTCCTAGTCTTACTGTTACTTTCTGCTGTTCTTCATCATTTCTCAAATCAAGTAAATTACTCTGTATCAATGTTACTCGCTGCCGGCGCAACTGCTTTCTTGTCATCCGGAAAAGGATCATTTTGATTCCACATGTAATAT] [+] EMBL AI975297 [GTTACGCAGCGATGGTTGTTAAGATTACCAAGGAGGATGAGAGACTCTTAGAAGAATACAGTCAAGCAGCATCAAAGAGTTCGGAGAAGCTAGTTTATGTTAATGCAGTCATGATATCTTCGATTCCTATCTGGTTATTTTGGGGCGTTCACAAAATGCCTCTGATAGCTAATTCATTTTTGTATCTCATCATTTCACTGGCCTCAACCTTCCTCATATCTATCGCATACAAAAATTCAAAAACACCGTTGATGGAAAGAATTGCTATCCGTCGAACCGAAGCAATTACCAAAGAAGTCAATAACGAAGCTGGTAAAGAAAAAAAGCTATCGAAGAAAAACAGAGAGGATGTTGTCCGCGAACGAACTAAAAAGGTTGCTGACTACGAATCAACGACTTTCTCAATATTTTACAATAATTGCCTATTTCTCCTAGTCTTACTGTTACTTTCTGCTGTTCTTCATCATTTCTCAAATCAAGTAAATTACTCTGTATCAATGTTACTCGCTGCCGGCGCAACTGCTTTCTTGTCATCCGGAAAAGGATCATTNTGATTCCACAT ] [+] EMBL AI977003 [ TAAGATTACCAAGGAGGATGAGAGACTCTTAGAAGAATACAGTCAAGCAGCATCAAAGAGTTCGGAGAAGCTAGTTTATGTTAATGCAGTCATGATATCTTCGATTCCTATCTGGTTATTTTGGGGCGTTCACAAAATGCCTCTGATAGCTAATTCATTTTTGTATCTCATCATTTCACTGGCCTCAACCTTCCTCATATCTATCGCATACAAAAATTCAAAAACACCGTTGATGGAAAGAATTGCTATCCGTCGAACCGAAGCAATTACCAAAGAAGTCAATAACGAAGCTGGTAAAGAAAAAAAGCTATCGAAGAAAAACAGAGAGGATGTTGTCCGCGAACGAACTAAAAAGGTTGCTGACTACGAATCAACTACTTTCTCAATATTTTACAATAATTGCCTATTTCTCCTAGTCTTACTGTTACTTTCTGCTGGTCTTCATCATTTCTCAAATCAAGTAAATTACTCTGTATCAAT ] [+] EMBL CD129199 [ GATTACCACGGAGGATGACATATTCTTAGAAGAATACAGGCAAGCACCATCAAAGAGTTCGGAGAAGCTAGTTTATGTTAATGCAGGCATGATATCTTCTATTCCTATCTGGTTATTTTGGGGCGTGCACAAAATGCCTCTGATACCTAATTCATTTTTGTATCTCATCATTTCACTGGCCTCAACCTTCCTCATATCTATCGg ] [+] EMBL CD141222 [ gcATGAGAGACTCTTAGAAGAATACAGTCAAGCAGCATCAAAGAGTTCGGAGAAGCTAGTTTATGTTAATGCAGTCATGATATCTTCGATTCCTATCTGGTTATTTTGGGGCGTTCACAAAATGCCTCTGATAGCTAATTCATTTTTGTATCTCATCATTTCACTGG ] [-] EMBL CD095930 [ TTAGAAGAATACAGTCAAGCAGCATCAAAGAGTTCGGAGAAGCTAGTTTATGTTAATGCAGTCATGATATCTTCGATTCCTATCTGGTTATTTTGGGGCGTTCACAAAATGCCTCTGATAGCTAATTCATTTTTGTATCTCATCATTTCACTGGCCTCAACCTTCCTCATATCTATCGCATACAAAAATTCAAAAACACCGTTGATGGAAAGAATTGCTATCCGTCGAACCGAAGCAATTACCAAAGAAGTCAATAACGAAGCTGGTAAAGAAAAAAAGCTATCGAAGAAAAACAGAGAGGATGTTGTCCGCGAACGAACTAAAAAGGTTGCTGACTACGAATCAACGACTTTCTCAATATTTTACAATAATTGCCTATTTCTCCTAGTCTT ] [+] EMBL AA629508 [ GCTATCGAAGAAAAACAGAGAGGATGTTGTCCGCGAACGAACTAAAAAGGTTGCTGACTACGAATCAACGACTTTCTCAATATTTTACAATAATTGCCTATTTCTCCTAGTCTTACTGTTACTTTCTGCTGTTCTTCATCATTTCTCAAATCAAGTAAATTACTCTGTATCAATGTTACTCGCTGCCGGCGCAACTGCTTTCTTGTCATCCGGAAAAGGATCATTTTGATTCCACAT ] [+] EMBL SMAA28859 [ CTTTCTCAATATTTTACAATAATTGCCTATTTCTCCTAGTCTTACTGTTACTTTCTGCTGTTCTTCATCATTTCTCAAATCAAGTAAATTACTCTGTATCAATGTTACTCGCTGCCGGCGCAACTGCTTTCTTGTCATCCGGAAAAGGATCATTTTGATTCCACATGTAATAT] consensusID : consensus_9391#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [AAAACCCAAGCCTTGCCTTATGAGTCGTTTATGTACAGTCCATATTCGCAGACTCGACCCTCAACACCGTTTAGGATAGTGACTACAGTTGGTTTGTTAGATGAATTCAACAAAGGGAGAACACGAGCGCTAACGACCGAACATTATAGATATTCCTCTTAGCCACTGGTCTCCATCAACTAATTCACCATAAAATAGCAGCATAGTATAAAATGAACCAGAAAAACAAACCGAATGACGCAACGAGTGATGTCCACTAGGTGAACGATTCTGGCAACACTTTANAAGGATACACTTGATTTGAGANATGATGAAGAACAGCAGANAGTAACAGTAAGACTAGGNAGAATAG] [+] EMBL CD141406 [AAAACCCAAGCCTTGCCTTATGAGTCGTTTATGTACAGTCCATATTCGCAGACTCGACCCTCAACACCGTTTAGGATAGTGACTACAGTTGGTTTGTTAGATGAATTCAACAAAGGGAGAACACGAGCGCTAACGACCGAACATTATAGATATTCCTCTTAGCCACTGGTCTCCATCAACTAATTCACCATAAAATAGCAGCATAGTATAAAATGAACCAGAAAAACAAACCGAATGACGCAACGAGTGATGTCCACTAGGTGAACGATTCTGGCAACACTTTANAAGGATACACTTGATTTGAGANATGATGAAGAACAGCAGANAGTAACAGTAAGACTAGGNAGAATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9391#1 -------------------------GTTACGCAGCGATGGTTGTTAAGATTACCAAGGAG 35 consensus_9391#2 ------------------------------------------------------------ consensus_9391#0 TATTCTCAAAATATATTTAAAGACCTATGTGGCGGATTGGCGAAAAACAGAGGTCACTAG 60 consensus_9391#1 GATGAGAGACTCTTAGAAGAATACAGTCAAGCAGCATCAAAGAGTTCGGAGAAGCTAGTT 95 consensus_9391#2 ------------------------------------------------------------ consensus_9391#0 GATGTATGAATACCATACTGTCCCTTTTCGAAAATCCTATGTATGTTTTGCGAAAGAAAT 120 consensus_9391#1 TATGTTAATGCAGTCATGATATCTTCGATTCCTAT-CTGGTTATTTTGGGGCGTTCACAA 154 consensus_9391#2 -------------------------AAAACCCAAG-CCTTGCCTTATGAGTCGTTTATGT 34 consensus_9391#0 GAGTTTCAGAACGCAACACATCATTGAGTTTCAATACAATGAGATCTTGATAATTCACGT 180 * * * * * ** * consensus_9391#1 AATGCCTCTGATAGCTAATTCATTTTTGTATCTCATC-ATTTCACT----GGCCTCAACC 209 consensus_9391#2 ACAGTCCATATTCGCAGACTCGACCCTCAACACCGTTTAGGATAGT----GACTACAGTT 90 consensus_9391#0 ATTCGCAACATTAGTGAGTCTTTTACTAACTACCTTAAAAATCGAATTTAGAAGTTAGGC 240 * * * * * * * * * * consensus_9391#1 --TTCCTCATATCTATCGCATACAAAAATT-CAAAAACACCGTTGATGGAA-AGAATTGC 265 consensus_9391#2 GGTTTGTTAGATGAATTCAACAAAGGGAGAACACGAGCGCTAACGACCGAACATTATAGA 150 consensus_9391#0 ATTTCGAAAAACGTATATTACATGTGGAATCAAAATGATCCTTTTCCGGATGACAAGAAA 300 ** * * ** * * * * * ** * * consensus_9391#1 -TATCCGTCGAACCGA--AGCAATTACCA-AAGAAGTCA--ATAACGAAGCTGGTAAAGA 319 consensus_9391#2 -TATTCCTCTTAGCCACTGGTCTCCATCA-ACTAATTCACCATAAAATAGC-AGCATAGT 207 consensus_9391#0 GCAGTTGCGCCGGCAGCGAGTAACATTGATACAGAGTAATTTCTAGTTCATTAGTTAAGG 360 * * * * * * * * * * ** consensus_9391#1 AAAAAAGCTATCGAAGAAAAACAGAGAGGATGTTGTCCGCGAACGAACTAAAAAGGTTGC 379 consensus_9391#2 ATAAAATGAACC--AGAAAAACAAACCGAATGACGC-----AACGAGTGA-------TGT 253 consensus_9391#0 AAATGAGAAACA--TAAAAACTATATCTCGTCATGCGTA-AATTATTTTGATAAGAGCAT 417 * * * * **** * * * * * consensus_9391#1 TGACTACGAATCAACGACTTTCTCAATATTTTACAATAATTGCCTATTTCTCCTAGTCTT 439 consensus_9391#2 CCACTAGG--TGAACGATTCTGGCAACACTTTANAAGGA--------TACACTTGATTTG 303 consensus_9391#0 TGCCTTG---TGATTGATGTTATGAAACATCAAGCANACTTTGAAACTCAGTTTCATCTT 474 ** * * ** * ** * * * * * * * consensus_9391#1 ACTGTTACTTTCTGCTGTTCTTCATCATTTCTCAAATCAAGTAAATTACTCTGTATCAAT 499 consensus_9391#2 AGANATGATGAAGAACAGCAGANAGTAACAGTAAGACTAGGNAGAATAG----------- 352 consensus_9391#0 ACAACTA-TAACGAATGGAGGTTGTGAGATGCANAAGCTAANAAAACAATCTATTGACCC 533 * * * * * * * * consensus_9391#1 GTTACTCGCTGCCGGCGCAACTGCTTTCTTGTCATCCGGAAAAGGATCATTTTGATTCCA 559 consensus_9391#2 ------------------------------------------------------------ consensus_9391#0 TTCACCTTTTAAAAGAACGTTGCATATCATAGTACATTCCAC------------------ 575 consensus_9391#1 CATGTAATAT 569 consensus_9391#2 ---------- consensus_9391#0 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||