These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9419#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 813 fasta sequence [TCATATCAGTCTAATTGTGTAAAATTGATTATACAAAGAGTATATGTTCATTTTACATACTTTGGGATGAAAAGTTACCAATTTTTGAAGTTTGAAAATAAATGTACACGAATGAAGGAACACGCAACAGGATAATATTCTTCACACTAAATGAGGCATCTGTATAAAATCCAACCGGTGAATCAGCTAAGGCTTTCGACCAAGGCGTCGTGCATTGAATCCGCGACAAGGACGTTCATTTCACCATCTAATTTAAATATTGATTCAATCACCTGAATTTCTGTGCTTGTCGTTTTCTGACCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACAGTTTCTTTATCTAGGTCTGGACGAACGAGGGCGACGTAATCATTGCAAGCAATTATATTCCCAAGAGCTGATAGGCGTTCTTCAACTCGCACTACCTTTACTTTGTCTGGCACGGAATTTGTCAAATGCATCAGTTCTTGATCAGTTGTTGAGTGTGGAACAAGGAGACCATGAGTATTGCCTACAGTCATTCTTCCAACAGCCCGAATACCAGCAATCGTTGTGTCAATGACAGGAAAGTTTTCTGGAAGTCCTCGTGCCGAATTC] [+] EMBL CD074396 [TCATATCAGTCTAATTGTGTAAAATTGATTATACAAAGAGTATATGTTCATTTTACATACTTTGGGATGAAAAGTTACCAATTTTTGAAGTTTGAAAATAAATGTACACGAATGAAGGAACACGCAACAGGATAATATTCTTCACACTAAATGAGGCATCTGTATAAAATCCAACCGGTGAATCAGCTAAGGCTTTCGACCAAGGCGTCGTGCATTGAATCCGCGACAAGGACGTTCATTTCACCATCTAATTTAAATATTGATTCAATCACCTGAATTTCTGTGCTTGTCGTTTTCTGACCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACAGTTTCTTTATCTAGGTCTGGACGAACGAGGGCGACGTAATCATTGCAAGCAATTATATTCCCAAGAGCTGATAGGCGTTCTTCAACTCGCACTACCTTTACTTTGTCTGGCACGGAATTTGTCAAATG ] [+] EMBL CD076205 [TCATATCAGTCTAATTGTGTAAAATTGATTATACAAAGAGTATATGTTCATTTTACATACTTTGGGATGAAAAGTTACCAATTTTTGAAGTTTGAAAATAAATGTACACGAATGAAGGAACACGCAACAGGATAATATTCTTCACACTAAATGAGGCATCTGTATAAAATCCAACCGGTGAATCAGCTAAGGCTTTCGACCAAGGCGTCGTGCATTGAATCCGCGACAAGGACGTTCATTTCACCATCTAATTTAAATATTGATTCAATCACCTGAATTTCTGTGCTTGTCGTTTTCTGACCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACAGTTTCTTTATCTAGGT ] [+] EMBL SM145 [TCATATCAGTCTAATTGTGTAAAATTGATTATACAAAGAGTATATGTTCATTTTACATACTTTGGGATGAAAAGTTACCAATTTTTGAAGTTTGAAAATAAATGTACACGAATGAAGGAACACGCAACAGGATAATATTCTTCACACTAAATGAGGCATCTGTATAAAATCCAACCGGTGAATCAGCTAAGGCTTTC ] [-] EMBL CD080484 [ nATCCAACCGGTGAATCAGCTAAGGCTTTCGACCAAGGCGTCGTGCATTGAATCCGCGACAAGNACGTTCATTTCACCATCTAATTTAAATATTGATTCAATCACCTGAATTTCTGTGCTTGTCGTTTTCTGACCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACAGTTTCTTTATCTAGGTCTGGACGAACGAGGGCGACGTAATCATTGCAAGCAATTATATTCCCAAGAGCTGATAGGCGTTCTTCAACTCGCACTACCTTTACTTTGTCTGGCACGGAATTTGTCAAATGCATCAGTTCTTGATCAGTTGTTGAGTGTGGAACAAGGAGACCATGAGTATTGCCTACAGTCATTCTTCCAACAGCCCGAATACCAGCAATCGTTGTGTCAATGACAGGAAAGTTTTCTGGAAGTCCTCGTGCCGAATTC] [+] EMBL CD128825 [ CCATCTAATTTAAATATTGATTCAATCACCTGAATTACTGTGCTTGTCGTTTTCTGACCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACAGTTTCTTTATCTAGGTCTGGACGAACGAGGGCGACGTAATCATTGCAAGCAATTATATTCCCAAGAGCTGATAGGCGTTCTTCAACTCGCACTACCTTTACTTTGTCTGGCAC ] consensusID : consensus_9419#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 675 fasta sequence [AAGCNTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACAGTTTCTTTATCTAGGTCTGGACGAACGAGGGCGACGTAATCATTGCAAGCAATTATATTCCCAAGAGCTGATAGGCGTTCTTCAACTCGCACTACCTTTACTTTGTCTGGCACGGAATTTGTCAAATGCATCAGTTCTTGATCAGTTGTTGAGTGTGGAACAAGGAGACCATGAGTATTGCCTACAGTCATTCTTCCAACAGCCCGAATACCAGCAATCGTTGTGTCAATGACAGGAAAGTTTTCTGGAAGTTCATCTCTGAAAACACTGTTGGAGTTTTCGGAACTCCCAACAGAAACCAAGCAGTAGTTATTTGTAAGTTTGGAAAACACACCAATATCACTAGCACCCTCAAAATGAGTACGTGAAGCCATTGTACAACAACACGCCAGAAGGAATTCGGAAATTGCCTCGTGCCGAATTNTTGGCTCGTAG] [-] EMBL CD082611 [AAGCNTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACAGTTTCTTTATCTAGGTCTGGACGAACGAGGGCGACGTAATCATTGCAAGCAATTATATTCCCAAGAGCTGATAGGCGTTCTTCAACTCGCACTACCTTTACTTTGTCTGGCACGGAATTTGTCAAATGCATCAGTTCTTGATCAGTTGTTGAGTGTGGAACAAGGAGACCATGAGTATTGCCTACAGTCATTCTTCCAACAGCCCGAATACCAGCAATCGTTGTGTCAATGACAGGAAAGTTTTCTGGAAGTTCATCTCTGAAAACACTGTTGGAGTTTTCGGAACTCCCAACAGAAACCAAGCAGTAGTTATTTGTAAGTTTGGAAAACACACCAATATCACTAGCACCCTCAAAATGAGTACGTGAAGCCATTGTACAACAACACGCCAGAAGGAATTCGGAAATTGCCTCGTGCCGAATTNTTGGCTCGTA ] [-] EMBL CD077989 [ CCCGAATACCAGCAATCGTTGTGTCAATGACAGGAAAGTTTTCTGGAAGTTCATCTCTGAAAACACTGTTGGAGTTTTCGGAACTCCCAACAGAAACCAAGCAGTAGTTATTTGTAAGTTTGGAAAACACACCAATATCACTAGCACCCTCAAAATGAGTACGTGAAGCCATTGTACAACAACACGCCAGAAGGAATTC GCCTCGTGCCGAATTTTTGGCcgcgag] [-] EMBL CD162834 [ AGCAATCGTTGTGTCAATGACAGGAAAGTTTTCTGGAAGTTCATCTCTGAAAACACTGTTGGAGTTTTCGGAACTCCCAACAGAAACCAAGCAGTAGTTATTTGTAAGTTTGGAAAACACACCAATATCACTAGCACCCTCAAAATGAGTACGTGAAGCCATTGTACAACAACACG ] consensusID : consensus_9419#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [AAAAGTAAGTCATAATTCATATGAGTTGACGAAACAATATAAACCACAATTATTTAACGACTGTCAATAAGTAGCTTTTATGTTAGCTGCAATACAATGAATATCGCATTGTTAACGTAAAAAGTTTTTGAAGTTAAAACGGATAAGCATACCTGAATTTCTGTGCTTGTCGTTTTCTGACCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACAGTTTCCTAAATATTACAGGAATTAGTCTT] [+] EMBL CD169399 [AAAAGTAAGTCATAATTCATATGAGTTGACGAAACAATATAAACCACAATTATTTAACGACTGTCAATAAGTAGCTTTTATGTTAGCTGCAATACAATGAATATCGCATTGTTAACGTAAAAAGTTTTTGAAGTTAAAACGGATAAGCATACCTGAATTTCTGTGCTTGTCGTTTTCTGACCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACAGTTTCCTAAATATTACAGGAATTAGTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9419#0 TCATATCAGTCTAATTGTGTAAAATTGATTATACAAAGAGTATATGTTCATTTTACATAC 60 consensus_9419#1 ------------------------------------------------------------ consensus_9419#2 ------------------------------------------------------------ consensus_9419#0 TTTGGGATGAAAAGTTACCAATTTTTGAAGTTTGAAAATAAATGTACACGAATGAAGGAA 120 consensus_9419#1 ------------------------------------------------------------ consensus_9419#2 ------------------------------------------------------------ consensus_9419#0 CACGCAACAGGATAATATTCTTCACACTAAATGAGGCATCTGTATAAAATCCAACCGGTG 180 consensus_9419#1 ------------------------------------------------------------ consensus_9419#2 -----AAAAGTAAGTCATAATTCATATGAGTTGACGAAACAATATAAACCACAATTATTT 55 consensus_9419#0 AATCAGCTAAGGCTTTCGACCAAGGCGTCG--TGCATTGAATCCGCGACAAGGACGTTCA 238 consensus_9419#1 ------------------------------------------------------------ consensus_9419#2 AACGACTGTCAATAAGTAGCTTTTATGTTAGCTGCAATACAATGAATATCGCATTGTTAA 115 consensus_9419#0 TTTCACCA---TCTAATTTAAATATTGATTCAATCACCTGAATTTCTGTGCTTGTCGTTT 295 consensus_9419#1 ------------------------------------------------------------ consensus_9419#2 CGTAAAAAGTTTTTGAAGTTAAAACGGATAAGCATACCTGAATTTCTGTGCTTGTCGTTT 175 consensus_9419#0 TCTGACCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTC 355 consensus_9419#1 -----------AAGCNTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTC 49 consensus_9419#2 TCTGACCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTC 235 **** ******************************************** consensus_9419#0 CTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATT 415 consensus_9419#1 CTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATT 109 consensus_9419#2 CTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATT 295 ************************************************************ consensus_9419#0 CGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTC 475 consensus_9419#1 CGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTC 169 consensus_9419#2 CGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTC 355 ************************************************************ consensus_9419#0 CGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGA 535 consensus_9419#1 CGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGA 229 consensus_9419#2 CGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGA 415 ************************************************************ consensus_9419#0 CCAATTCCACAGTTTCTTTATCTAGGTCTGGACGAACGAGGGCGACGTAATCATTGCAAG 595 consensus_9419#1 CCAATTCCACAGTTTCTTTATCTAGGTCTGGACGAACGAGGGCGACGTAATCATTGCAAG 289 consensus_9419#2 CCAATTCCACAGTTTCCTAA----ATATTACAGGAATTAGTCTT---------------- 455 **************** * * * * *** ** consensus_9419#0 CAATTATATTCCCAAGAGCTGATAGGCGTTCTTCAACTCGCACTACCTTTACTTTGTCTG 655 consensus_9419#1 CAATTATATTCCCAAGAGCTGATAGGCGTTCTTCAACTCGCACTACCTTTACTTTGTCTG 349 consensus_9419#2 ------------------------------------------------------------ consensus_9419#0 GCACGGAATTTGTCAAATGCATCAGTTCTTGATCAGTTGTTGAGTGTGGAACAAGGAGAC 715 consensus_9419#1 GCACGGAATTTGTCAAATGCATCAGTTCTTGATCAGTTGTTGAGTGTGGAACAAGGAGAC 409 consensus_9419#2 ------------------------------------------------------------ consensus_9419#0 CATGAGTATTGCCTACAGTCATTCTTCCAACAGCCCGAATACCAGCAATCGTTGTGTCAA 775 consensus_9419#1 CATGAGTATTGCCTACAGTCATTCTTCCAACAGCCCGAATACCAGCAATCGTTGTGTCAA 469 consensus_9419#2 ------------------------------------------------------------ consensus_9419#0 TGACAGGAAAGTTTTCTGGAAGTCCTCGTGCCGAATTC---------------------- 813 consensus_9419#1 TGACAGGAAAGTTTTCTGGAAGTTCATCT-CTGAAAACACTGTTGGAGTTTTCGGAACTC 528 consensus_9419#2 ------------------------------------------------------------ consensus_9419#0 ------------------------------------------------------------ consensus_9419#1 CCAACAGAAACCAAGCAGTAGTTATTTGTAAGTTTGGAAAACACACCAATATCACTAGCA 588 consensus_9419#2 ------------------------------------------------------------ consensus_9419#0 ------------------------------------------------------------ consensus_9419#1 CCCTCAAAATGAGTACGTGAAGCCATTGTACAACAACACGCCAGAAGGAATTCGGAAATT 648 consensus_9419#2 ------------------------------------------------------------ consensus_9419#0 --------------------------- consensus_9419#1 GCCTCGTGCCGAATTNTTGGCTCGTAG 675 consensus_9419#2 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||