These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9429#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1473 fasta sequence [CAGGGGTATTTTCGGAACTCTGTGACTGAAGCATGTCTTTATACCCTTCTCTCGAAGAGTTAAAAGTACAGACTATACTTGACAGTCAAAGCAATGGACCAACCACTATGCAGTCCAATTGTCAAGGACCATTACCACAAATGAACTCTACTCTAATGGGAAATCGCAATGAGGATAATAATTTGTCTTCTTACAACAGTTGTGGTGGATCTGTTACCTATGGATCTACAGTATCTGGTATTTTTTCTCAAGCTGGTATGGAGCGTGGGATCAATTCAATGTCGATTGCCCCTTTTTCACCAAGCGGGGCACTTTGTCTACCACTTCCAGCACCATTCGATTGCATAGATATAAAACCAGGAGTTAGACTTGTTACTCTTTGTAAAAATGAATTCGGTAAAGTTGGAATTCAGCTTAAGGAAATACAGAAAGGTATATTTGTTTCATTTGTGGAGGGGTTTTCACCAGCTGCACTTGGCGGTGTGCGTTTTGGAGATCAAGTCCTGGAGATTAATGATATTCTAGTTACCGGTTGTTCAGGTACAAGATCTATGGAAATACTAAAAAGTTCAACTCCTAACAACATAAGACTTGTATTACGTGATCGTCCATTCGAACGTGTTATTACCGTGCATAAAGACAGTTTAGGTGCAATTGGTATACAAGTTCGTAATGGTTTAATTAAAGCAATCGTTAAAGACTCAAGTGCTGCACGTAATGGTATATTAACTAATCATCAAATTATCGAAGTTAATGGACAAAATGTTGTTGGTTTAAAAGATAAAGATTTATTACAACTTATGGACGAATCAAAAACTCCAATGAAAGTTACTATTATACCAAAGACATTTTATGATAAATTAACTAGAAGTCTTCCAAGTGGACAATTACGATTACAAATGGATCGATCA-TTACCTTTTGTTTAAATTTATAAATAACAATTACAGATATTTTTATTCAATATTAATTATGATTAACTTAACAGTATGATCATGATGATGATGATGATGGTAGATGAATTGAAGTTTCTCTTTCCTACTGAATTTATTCATAATAAACAATTGANTGATCCTTTTTACTTGNTTCTTTTGNTTTACTCTTCCAAAAANCCAATAACGAGCTATTTAATTTTGCTATACGAATCATTTTGCATGATTGNTAACAATGATGTTTGGTAATAATTGGAAAGTATTATGATGACATTAATAANTGATTATAGTTAACATTGAATNTATTANAAGTCATTGAGTACCATTNTACTCAAGNNCTATTATTANTACTACTACCTTTTCGATAGNANTCACTGACNACNNANGGGNGAGTATTTCTCATTTCACTGNTTGNGTTACNTTACNNCTTGACTTTNCCATTTTCTTCCGGNTTTTATNTTNCGGNTTCCTNCTCATCAAGTTTGNAANANNCNGACCNATTGGCGTTANNNCANGNCNCACGCACNNCTCGNGGCANGGGGCC] [+] EMBL CD079414 [CAGGGGTATTTTCGGAACTCTGTGACTGAAGCATGTCTTTATACCCTTCTCTCGAAGAGTTAAAAGTACAGACTATACTTGACAGTCAAAGCAATGGACCAACCACTATGCAGTCCAATTGTCAAGGACCATTACCACAAATGAACTCTACTCTAATGGGAAATCGCAATGAGGATAATAATTTGTCTTCTTACAACAGTTGTGGTGGATCTGTTACCTATGGATCTACAGTATCTGGTATTTTTTCTCAAGCTGGTATGGAGCGTGGGATCAATTCAATGTCGATTGCCCCTTTTTCACCAAGCGGGGCACTTTGTCTACCACTTCCAGCACCATTCGATTGCATAGATATAAAACCAGGAGTTAGACTTGTTACTCTTTGTAAAAATGAATTCGGTAAAGTTGGAATTCAGCTTAAGGAAATACAGAAAGGTATATTTGTTTCATTTGTGGAGGGGTTTTCACCAGCTGCACTTGGCGGTGTGCGTTTTGGAGATCAAGTCCTGGAGATTAATGATATTCTAGTTACCGGTTGTTCAGGTACAAGATCTATGGAAATACTAAAAAGTTCAACTCCTAACAACATAAGACTTGTATTACGTGATCGTCCATTCGAACGTGTTATTACCGTGCATAA ] [+] EMBL CD067023 [ GTTACTCTTTGTAAAAATGAATTCGGTAAAGTTGGAATTCAGCTTAAGGAAATACAGAAAGGTATATTTGTTTCATTTGTGGAGGGGTTTTCACCAGCTGCACTTGGCGGTGTGCGTTTTGGAGATCAAGTCCTGGAGATTAATGATATTCTAGTTACCGGTTGTTCAGGTACAAGATCTATGGAAATACTAAAAAGTTCAACTCCTAACAACATAAGACTTGTATTACGTGATCGTCCATTCGAACGTGTTATTACCGTGCATAAAGACAGTTTAGGTGCAATTGGTATACAAGTTCGTAATGGTTTAATTAAAGCAATCGTTAAAGACTCAAGTGCTGCACGTAATGGTATATTAACTAATCATCAAATTATCGAAGTTAATGGACAAAATGTTGTTGGTTTAAAAGATAAAGATTTATTACAACTTATGGACGAATCAAAAACTCCAATGAAAGTTACTATTATACCAAAGACATTNTATGATAAATTAACT ] [-] EMBL CD073689 [ TTCGAACGTGTTATTACCGTGCATAAAGACAGTTTAGGTGCAATTGGTATACAAGTTCGTAATGGTTTAATTAAAGCAATCGTTAAAGACTCAAGTGCTGCACGTAATGGTATATTAACTAATCATCAAATTATCGAAGTTAATGGACAAAATGTTGTTGGTTTAAAAGATAAAGATTTATTACAACTTATGGACGAATCAAAAACTCCAATGAAAGTTACTATTATACCAAAGACATTTTATGATAAATTAACTAGAAGTCTTCCAAGTGGACAATTACGATTACAAATGGATCGATCA TTACCTTTTGTTTAAATTTATAAATAACAATTACAGATATTTTTATTCAATATTAATTATGATTAACTTAACAGTATGATCATGATGATGATGATGATGGTAGATGAATTGAAGTTTCTCTTTCCTACTGAATTTATTCATAATAAACAATTGAATGATCCTTTAAACTTGTTTCTTTTGTTT ] [-] EMBL CD197810 [ CACGTAATGGTATATTAACTAATCATCAAATTATCGAAGTTAATGGACAAAATGTTGTTGGTTTAAAAGATAAAGATTTATTACAACTTATGGACGAATCAAAAACTCCAATGAAAGTTACTATTATACCAAAGACATTTTATGATGAATTAACTAGAAGTCTTCCAAGTGGACAATTACGATTACAAATGGATCGATCACTTACCTTTTGTTTAAATTTATAAATAACACTTACAGATATTTTTATTCAATATTAATTATGATTAACTTAACAGTATGATCATGATGATGATGATGATGGTAGATGAATTGAAGTTTCTCTTTCGTACTGAATTTATTCATAATA ] [+] EMBL SM065 [ tcggcacgaGATGATGATGATGATGGTAGATGAATTGAAGTTTCTCTTTCCTACTGAATTTATTCANAATAAACAATTGANTGATCCTTTTTACTTGNTTCTTTTGNTTTACTCTTCCAAAAANCCAATAACGAGCTATTTAATTTTGCTATACGAATCATTTTGCATGATTGNTAACAATGATGTTTGGTAATAATTGGAAAGTATTATGATGACATTAATAANTGATTATAGTTAACATTGAATNTATTANAAGTCATTGAGTACCATTNTACTCAAGNNCTATTATTANTACTACTACCTTTTCGATAGNANTCACTGACNACNNANGGGNGAGTATTTCTCATTTCACTGNTTGNGTTACNTTACNNCTTGACTTTNCCATTTTCTTCCGGNTTTTATNTTNCGGNTTCCTNCTCATCAAGTTTGNAANANNCNGACCNATTGGCGTTANNNCANGNCNCACGCACNNCTCGNGGCANGGGGCC] [+] EMBL SM7211 [ gaGATGATGATGATGATGGTAGATGAATTGAAGTTTCTCTTTCCTACTGAATTTATTCANAATAAACAATTGANTGATCCTTTTTACTTGNTTCTTTTGNTTTACTCTTCCAAAAANCCAATAACGAGCTATTTAATTTTGCTATACGAATCATTTTGCATGATTGNTAACAATGATGTTTGGTAATAATTGGAAAGTATTATGATGACATTAATAANTGATTATAGTTAACAT ] consensusID : consensus_9429#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [AGAAGTCTTCCAAGTGGACAATTACGATTACAAATGGATCGATCATTACCTTTTGTTTAAATTTATAAATAACAATTACAGATATTTTTATTCAATATTAATTATAATTAACTTAACAGTATGATCATGATGATGATGATGATGGTGTGAAGAGGTAATGGACTAAATGTAGTTGGATTAAAAGATAAAGATTTATTACAATTTATGGACGAATCAAAAACTCCAATGAAAGTTACTATTATACCAAAGACATTTTATGATAAATTAACTAGAAGTCTTCCAAGTGGACAATTACGATTACAAATGGATCGATCATTACCTTTTGTTTAAATTTATAAATAACAATTACAGATATTTTTATTCAATATTAATTATAATTAACTTAACAGTATGATCATGATGATGATGATGATGGTAGATGAATTGAAGTTTCTCTTTCCTACTGAATTTATTCATAATAAACAATGGAATGGTCCGTCGAA] [-] EMBL CD064084 [AGAAGTCTTCCAAGTGGACAATTACGATTACAAATGGATCGATCATTACCTTTTGTTTAAATTTATAAATAACAATTACAGATATTTTTATTCAATATTAATTATAATTAACTTAACAGTATGATCATGATGATGATGATGATGGTGTGAAGAGGTAATGGACTAAATGTAGTTGGATTAAAAGATAAAGATTTATTACAATTTATGGACGAATCAAAAACTCCAATGAAAGTTACTATTATACCAAAGACATTTTATGATAAATTAACTAGAAGTCTTCCAAGTGGACAATTACGATTACAAATGGATCGATCATTACCTTTTGTTTAAATTTATAAATAACAATTACAGATATTTTTATTCAATATTAATTATAATTAACTTAACAGTATGATCATGATGATGATGATGATGGTAGATGAATTGAAGTTTCTCTTTCCTACTGAATTTATTCATAATAAACAATGGAATGGTCCGTCGAA] consensusID : consensus_9429#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [TATCATAATAAACACTTGANTGATCCTTTNTACTNGTTTCTTTGGTTTTACTCTTCCAAAAAAAAAATAACGAGCTATNTANTTTNGCTATACGAATCATTTNGCATGATTGTTAACAATGATGTNTGGTAATAATTGGAAAGTATTATGATGACATTAATAATTGNATTATAGTTAACATTGAATATATTAAAAGTCATTGAGTACCATTATACTCAAGTACTATTATTATTATTATACCTTTGCGATAGTATTCATGACAAAAAAAGAGAGTATTTCTCATTTCACTGTTTGCTTATTTATTCTTGATTTTCCATTTNNTNCGGNTTNCATTTNATTTNCTACTCATCAATTTAAATAAA] [+] EMBL SM923 [TATCATAATAAACACTTGANTGATCCTTTNTACTNGTTTCTTTGGTTTTACTCTTCCAAAAAAAAAATAACGAGCTATNTANTTTNGCTATACGAATCATTTNGCATGATTGTTAACAATGATGTNTGGTAATAATTGGAAAGTATTATGATGACATTAATAATTGNATTATAGTTAACATTGAATATATTAAAAGTCATTGAGTACCATTATACTCAAGTACTATTATTATTATTATACCTTTGCGATAGTATTCATGACAAAAAAAGAGAGTATTTCTCATTTCACTGTTTGCTTATTTATTCTTGATTTTCCATTTNNTNCGGNTTNCATTTNATTTNCTACTCATCAATTTAAATAAA] consensusID : consensus_9429#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 244 fasta sequence [TGGTATTTTTTCTCAAGCTGGTATGGAGNGTGGGATCAATTCAATGTCGATTGNCCCTTTTTCACCAAGAGGNGTACTTTGTCTACCACTTCCAGTACCATNCGATTGCATNGATATAANACCAGGAGNAAGACTCGTTACTCTTNGTAANATTGAATTCGGTAATGTTTGGAATTCAGTTTAAGGAAATACAGAAAGGTATATTTGCCCCATTNGNGGAGGGGNCTTCACCAGCTGCACNTGG] [+] EMBL SMRAP161 [TGGTATTTTTTCTCAAGCTGGTATGGAGNGTGGGATCAATTCAATGTCGATTGNCCCTTTTTCACCAAGAGGNGTACTTTGTCTACCACTTCCAGTACCATNCGATTGCATNGATATAANACCAGGAGNAAGACTCGTTACTCTTNGTAANATTGAATTCGGTAATGTTTGGAATTCAGTTTAAGGAAATACAGAAAGGTATATTTGCCCCATTNGNGGAGGGGNCTTCACCAGCTGCACNTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9429#0 CAGGGGTATTTTCGGAACTCTGTGACTGAAGCATGTCTTTATACCCTTCTCTCGAAGAGT 60 consensus_9429#3 ------------------------------------------------------------ consensus_9429#2 ------------------------------------------------------------ consensus_9429#1 ------------------------------------------------------------ consensus_9429#0 TAAAAGTACAGACTATACTTGACAGTCAAAGCAATGGACCAACCACTATGCAGTCCAATT 120 consensus_9429#3 ------------------------------------------------------------ consensus_9429#2 ------------------------------------------------------------ consensus_9429#1 ------------------------------------------------------------ consensus_9429#0 GTCAAGGACCATTACCACAAATGAACTCTACTCTAATGGGAAATCGCAATGAGGATAATA 180 consensus_9429#3 ------------------------------------------------------------ consensus_9429#2 ------------------------------------------------------------ consensus_9429#1 ------------------------------------------------------------ consensus_9429#0 ATTTGTCTTCTTACAACAGTTGTGGTGGATCTGTTACCTATGGATCTACAGTATCTGGTA 240 consensus_9429#3 -------------------------------------------------------TGGTA 5 consensus_9429#2 -------------TATCATAATAAACACTTGANTGATCCTTTNTACTNGTTTCTTTGGTT 47 consensus_9429#1 ---------AGAAGTCTTCCAAGTGGACAATTACGATTACAAATGGATCGATCATTACCT 51 * consensus_9429#0 TT--TTT---TCTCAAGCTGGTATGGAGCGTGGGATCAATTCAATGT-CGATTGCCCCTT 294 consensus_9429#3 TT--TTT---TCTCAAGCTGGTATGGAGNGTGGGATCAATTCAATGT-CGATTGNCCCTT 59 consensus_9429#2 TTACTCT---TCCAAAAAAAAAATAACGAGCTATNTANTTTNGCTATACGAATCATTTNG 104 consensus_9429#1 TTTGTTTAAATTTATAAATAACAATTACAGATATTTTTATTCAATAT-TAATTATAATTA 110 ** * * * * * * * ** * * * * consensus_9429#0 TTTCACCAAGCGGGGCACTTTG-TC-TACCACTTCCAGCACCATTCGATTGCATAGAT-- 350 consensus_9429#3 TTTCACCAAGAGGNGTACTTTG-TC-TACCACTTCCAGTACCATNCGATTGCATNGAT-- 115 consensus_9429#2 CATGATTGTTAACAATGATGTN-TGGTAATAATTGGAAAGTATTATGATGACATTAAT-- 161 consensus_9429#1 ACTTAACAGTATGATCATGATGATGATGATGATGGTGTGAAGAGGTAATGGACTAAATGT 170 * * * * * * ** * ** consensus_9429#0 A-TAAAACCAGGAGT--TAGACTTGTTACTCTTTGTAAA---AATGAATTCGGTAAAGTT 404 consensus_9429#3 A-TAANACCAGGAGN--AAGACTCGTTACTCTTNGTAAN---ATTGAATTCGGTAATGTT 169 consensus_9429#2 AATTGNATTATAGTT--AACATTGAATATATTAAAAGTC---ATTGAGTACCATTATACT 216 consensus_9429#1 AGTTGGATTAAAAGATAAAGATTTATTACAATTTATGGACGAATCAAAAACTCCAATGAA 230 * * * * * * * ** * * * * * consensus_9429#0 -GGAATTCAGC-TTAAGGAAATACAGAAA-GGTA-TATTTGTTTCA--TTTGTGGAGGGG 458 consensus_9429#3 TGGAATTCAGT-TTAAGGAAATACAGAAA-GGTA-TATTTGCCCCA--TTNGNGGAGGGG 224 consensus_9429#2 CAAGTACTATTATTATTATTATACCTTTGCGATAGTATTCATGACA--AAAAAAGAGAGT 274 consensus_9429#1 -AGTTACTATTATACCAAAGACATTTTAT-GATA-AATTAACTAGAAGTCTTCCAAGTGG 287 * * * * * ** *** * ** * consensus_9429#0 TTTTCACCAGCTGCACTTGGCGGTGTGCGTTTTGGAGATCAAGTCCTGGAGATTAATGAT 518 consensus_9429#3 NCTTCACCAGCTGCACNTGG---------------------------------------- 244 consensus_9429#2 ATTTCTCATTTCACTGTTTGCTTATTTATTCTTGATTTTCCATTTNNTNCGGNTTNCATT 334 consensus_9429#1 ACAATTACGATTACAAATGGATCGATCATTACCTTTTGTTTAAATTTATAAATAACAATT 347 * * * consensus_9429#0 ATTCTAGTTACCGGTTGTTCAGGTACAAGATCTATGGAAATACTAAAAAGTTCAACTCCT 578 consensus_9429#3 ------------------------------------------------------------ consensus_9429#2 TNATTTNCTACTCATCAATTTAAATAAA-------------------------------- 362 consensus_9429#1 ACAGATATTTTTATTCAATATTAATTATAATTAACTTAACAGTATGATCATGATGATGAT 407 consensus_9429#0 AACAACATAAGACTTGTATTACGTGATCGTCCATTCGAACGTGTTATTACCGTGCATAAA 638 consensus_9429#3 ------------------------------------------------------------ consensus_9429#2 ------------------------------------------------------------ consensus_9429#1 GATGATGGTAGATGAATTGAAGTTTCTCTTTCCTACTGAATTTATTCATAATAAACAATG 467 consensus_9429#0 GACAGTTTAGGTGCAATTGGTATACAAGTTCGTAATGGTTTAATTAAAGCAATCGTTAAA 698 consensus_9429#3 ------------------------------------------------------------ consensus_9429#2 ------------------------------------------------------------ consensus_9429#1 GAATGGTCCGTCGAA--------------------------------------------- 482 consensus_9429#0 GACTCAAGTGCTGCACGTAATGGTATATTAACTAATCATCAAATTATCGAAGTTAATGGA 758 consensus_9429#3 ------------------------------------------------------------ consensus_9429#2 ------------------------------------------------------------ consensus_9429#1 ------------------------------------------------------------ consensus_9429#0 CAAAATGTTGTTGGTTTAAAAGATAAAGATTTATTACAACTTATGGACGAATCAAAAACT 818 consensus_9429#3 ------------------------------------------------------------ consensus_9429#2 ------------------------------------------------------------ consensus_9429#1 ------------------------------------------------------------ consensus_9429#0 CCAATGAAAGTTACTATTATACCAAAGACATTTTATGATAAATTAACTAGAAGTCTTCCA 878 consensus_9429#3 ------------------------------------------------------------ consensus_9429#2 ------------------------------------------------------------ consensus_9429#1 ------------------------------------------------------------ consensus_9429#0 AGTGGACAATTACGATTACAAATGGATCGATCATTACCTTTTGTTTAAATTTATAAATAA 938 consensus_9429#3 ------------------------------------------------------------ consensus_9429#2 ------------------------------------------------------------ consensus_9429#1 ------------------------------------------------------------ consensus_9429#0 CAATTACAGATATTTTTATTCAATATTAATTATGATTAACTTAACAGTATGATCATGATG 998 consensus_9429#3 ------------------------------------------------------------ consensus_9429#2 ------------------------------------------------------------ consensus_9429#1 ------------------------------------------------------------ consensus_9429#0 ATGATGATGATGGTAGATGAATTGAAGTTTCTCTTTCCTACTGAATTTATTCATAATAAA 1058 consensus_9429#3 ------------------------------------------------------------ consensus_9429#2 ------------------------------------------------------------ consensus_9429#1 ------------------------------------------------------------ consensus_9429#0 CAATTGANTGATCCTTTTTACTTGNTTCTTTTGNTTTACTCTTCCAAAAANCCAATAACG 1118 consensus_9429#3 ------------------------------------------------------------ consensus_9429#2 ------------------------------------------------------------ consensus_9429#1 ------------------------------------------------------------ consensus_9429#0 AGCTATTTAATTTTGCTATACGAATCATTTTGCATGATTGNTAACAATGATGTTTGGTAA 1178 consensus_9429#3 ------------------------------------------------------------ consensus_9429#2 ------------------------------------------------------------ consensus_9429#1 ------------------------------------------------------------ consensus_9429#0 TAATTGGAAAGTATTATGATGACATTAATAANTGATTATAGTTAACATTGAATNTATTAN 1238 consensus_9429#3 ------------------------------------------------------------ consensus_9429#2 ------------------------------------------------------------ consensus_9429#1 ------------------------------------------------------------ consensus_9429#0 AAGTCATTGAGTACCATTNTACTCAAGNNCTATTATTANTACTACTACCTTTTCGATAGN 1298 consensus_9429#3 ------------------------------------------------------------ consensus_9429#2 ------------------------------------------------------------ consensus_9429#1 ------------------------------------------------------------ consensus_9429#0 ANTCACTGACNACNNANGGGNGAGTATTTCTCATTTCACTGNTTGNGTTACNTTACNNCT 1358 consensus_9429#3 ------------------------------------------------------------ consensus_9429#2 ------------------------------------------------------------ consensus_9429#1 ------------------------------------------------------------ consensus_9429#0 TGACTTTNCCATTTTCTTCCGGNTTTTATNTTNCGGNTTCCTNCTCATCAAGTTTGNAAN 1418 consensus_9429#3 ------------------------------------------------------------ consensus_9429#2 ------------------------------------------------------------ consensus_9429#1 ------------------------------------------------------------ consensus_9429#0 ANNCNGACCNATTGGCGTTANNNCANGNCNCACGCACNNCTCGNGGCANGGGGCC 1473 consensus_9429#3 ------------------------------------------------------- consensus_9429#2 ------------------------------------------------------- consensus_9429#1 ------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||