These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9453#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 364 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTACTGCTGGGAGTTATTTATTTTACATTATGTATAGCTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGTTCCTTAAGCATGAGACATCCACCGTGGTA-CAGCGAGATGATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCATCGATCGCGTTACACACGCCGACTGACAGGA-ACCACGAGCTGGGCATGCGTATATATACGACTGG] [+] EMBL AI395201 [TTTTTTTTTTTTTTTTTTTTTTTTTACTGCTGGGAGTTATTTATTTTACATTATGTATAGCTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGTTCCTTAAGCATGAGACATCCACCGTGGTA CAGCGAGATGATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCATCGATCGCGTcctcgtg ] [+] EMBL AI395440 [ TTTTTTTTTTTTTTTTACTGCTGGGAGTTATTTATTTTACATTATGTATAGCTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGTTCCTTAAGCATGAGACATCCACCGTGGTA CAGCGAGATGATTTAGAGCCAACAACAGACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGTAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCATCGATCGCGTTACACACGCCGACTGACAGGA ACCACGAGCTGGGCAT ] [+] EMBL AI395563 [ TTTTTTTTTTTTTTTTACTGCTGGGAGTTATTTATTTTACATTATGTAGAGCTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGTTCCTTAAGCATGAGACATCCACCGTGGTA CAGCGAGATGATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACGGAGa ] [-] EMBL CD083545 [ TGCTGGGAGTTATTTATTTTACATTATGTATAGCTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGTTCCTTAAGCATGAGACATCCACCGTGGTA CAGCGAGATGATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCATCGATCGC ] [+] EMBL CD200812 [ cggcCTGGAATTTATTTATTTTACATTATGTATAGCTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGTTCTTTATGCATGAAACATCCACCGTGGGAGCGGGGAGATGATTTAAAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCATCGATCGCGTTACACACGCCGACTGACAGGA ACCACGAGCTGGGCGTGCGTATATATACG ] [-] EMBL BG932412 [ AGTTATTTATTTTACATTATGTATAGCTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGTTCCTTAAGCATGAGACATCCACCGTGGTA CAGCGAGATGATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTA ] [-] EMBL CD150569 [ TTTACATTATGTATAGCTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGTTCCTTAAGCATGAGACATCCACCGTGGTA CAGCGAGATGATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCATCGATCGCGTTACACACGCCGACTGGCAGGATACCACGAGCTGGGCATGCGTATATTGACGACTGG] consensusID : consensus_9453#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 280 fasta sequence [GATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCATCGATCGCGTTACACTGGAAATGAAAACAAAAATCGTTAGCTGCATCATAGATCAAGTAATATCAGAGGGAATTTTGACAGTCACATTGGGATATGAGACTCTAGTCCACAGTATCATCACAACACAAGAGCACATCAC] [+] EMBL CD114475 [GATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCATCGATCGCGTTACACTGGAAATGAAAACAAAAATCGTTAGCTGCATCATAGATCAAGTAATATCAGAGGGAATTTTGACAGTCACATTGGGATATGAGACTCTAGTCCACAGTATCATCACAACACAAGAGCACATCAC] [+] EMBL CD114379 [GATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACTAAATGGATAGCCATCACCGAACCGCTACTGAGCATCGATCGCGATACACTGGAAATGAAAACAAAAATCGTTAGCTGCATCATAGATCAAGTAATATCAGAGGGAATTTTGACAGTCACATTGGGATATGAGACTCCAGTCCACAGTATCATCACAACACAAGAGCACATCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9453#0 TTTTTTTTTTTTTTTTTTTTTTTTTACTGCTGGGAGTTATTTATTTTACATTATGTATAG 60 consensus_9453#1 ------------------------------------------------------------ consensus_9453#0 CTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGT 120 consensus_9453#1 ------------------------------------------------------------ consensus_9453#0 TCCTTAAGCATGAGACATCCACCGTGGTACAGCGAGATGATTTAGAGCCAACAACAAACA 180 consensus_9453#1 --------------------------------------GATTTAGAGCCAACAACAAACA 22 ********************** consensus_9453#0 CGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAG 240 consensus_9453#1 CGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAG 82 ************************************************************ consensus_9453#0 GCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCAT 300 consensus_9453#1 GCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCAT 142 ************************************************************ consensus_9453#0 CGATCGCGTTACACACGCCG-ACTGACAGGAACCACGAGCTGGGCATGCGTATATATACG 359 consensus_9453#1 CGATCGCGTTACACTGGAAATGAAAACAAAAATCGTTAGCTGCATCATAGATCAAGTAAT 202 ************** * *** ** * ***** * * ** consensus_9453#0 ACTGG------------------------------------------------------- 364 consensus_9453#1 ATCAGAGGGAATTTTGACAGTCACATTGGGATATGAGACTCTAGTCCACAGTATCATCAC 262 * * consensus_9453#0 ------------------ consensus_9453#1 AACACAAGAGCACATCAC 280 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||