These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9467#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 884 fasta sequence [GGTTTTTTTTTAAATAGCAGTACATGAATTCATTTTGAAGAAAAAGAATTTGTAGACAATCAATAAAGAAGGTAAATGTAGCAATGAAAGAATGGAACAATTATATACACAATTTTTTTTGGTTTTGATAAAAGAAGAAAGACTTTTTAATTCACCCATTACTGATGTAAAAAAAAACGAGCAAACAATCACTAGTTCATCATGGATGATGTAACAATTATTGAATAAACTAAAAAATATTAGTGAAAGACAATACAATAATTGACAATCATCCACAATTATAATCATGTACTGTACAAAAAGAGAAGGAGAATTACATTACAACATTTTAACTCTCACATACCAACAAACTATTATTATTGCATTATTTATCCATAGTACTAAGAGTTGATTGAATATTAATTGCTTTTTTATTCTTTTTCGTAGATAATGCAGCTATAATCCATTTCATATTGATAAGCATCATTTTTAAAGCTTTAGTCCAATTTTCTTCAGAATTCCCATTCCATTTGATCGAATAGATTTGACCATCAGGATCTTGTAATTTTCCCTTATCTTTAATGCGAAAAGGCAATTGCATATTGGATGTATGTTCTATAATTTGTTGAGCTTGATTTAAACAGTCTAAAAAATTTATCATAGCTGTATCGAATTTGCCAGCGCTCAATAATCGCATGCCACCAGTAGTATAATAAAGAGGAAATTCTTTCGATATCGATAGTTGAACCATTTTTGACTGGCTACCCATTGGCACAATACGATGATTTTGAAAAATGTAATTAAGTTTCTTCCCGATGCACTGTAATAATAAAGCACATGACCCCAAGCTGCATTGATCTCTCCCCAACCAACAGGACGATTAGGCAAACGACCACCTCGTGCCG] [+] EMBL CD084209 [GGTTTTTTTTTAAATAGCAGTACATGAATTCATTTTGAAGAAAAAGAATTTGTAGACAATCAATAAAGAAGGTAAATGTAGCAATGAAAGAATGGAACAATTATATACACAATTTTTTTTGGTTTTGATAAAAGAAGAAAGACTTTTTAATTCACCCATTACTGATGTAAAAAAAAACGAGCAAACAATCACTAGTTCATCATGGATGATGTAACAATTATTGAATAAACTAAAAAATATTAGTGAAAGACAATACAATAATTGACAATCATCCACAATTATAATCATGTACTGTACAAAAAGAGAAGGAGAATTACATTACAACATTTTAACTCTCACATACCAACAAACTATTATTATTGCATTATTTATCCATAGTACTAAGAGTTGATTGAATATTAATTGCTTTTTTATTCTTTTTCGTAGATAATGCAGCTATAATCCATTTCATATTGATAAGCATCATTTTTAAAGCTTTAGTCCAATTTTCTTCAGAATTCCCATTCCATTTGATCGAAT ] [+] EMBL SMW756 [ ATAAAGAAGGTAAATGTAGCAATGAAAGAATGGAACAATTATATACACAATTTTTTTTGGTTTTGATAAAAGAAGAAAGACTTTTTAATTCACCCATTACTGATGTAAAAAAAAACGAGCAAACAATCACTAGTTCATCATGGATGATGTAACAATTATTGAATAAACTAAAAAATATTAGTGAAAGACAATACAATAATTGACAATCATCCACAATTATAATCATGTACTGTACAAAAAGAGAAGGAGAATTACATTACAACATTTTAACTCTCACATACCAACAAACTATTATTATTGCATTATTTATCCATAGTACTAAGAGTTGATTGAATATTAATGGCTTTTTTATTCTTTTTCGTAGATAATGCAGCTATAATCCATTTCATATTGATAAGCATCATTTTTAAAGCTTTAGTCCAATT ] [+] EMBL CD073849 [ TCACTAGTTCATCATGGATGATGTAACAATTATTGAATAAACTAAAAAATATTAGTGAAAGACAATACAATAATTGACAATCATCCACAATTATAATCATGTCCTGTACAAAAAGAGAAGGAGAATTACATTACAACATTTTACCTCTCACATACCAACAAACTATTATTATTGCATTATTTATCCATAGTACTAAGAGTTGATTGAATATTAATTGCTTTTTTATTCTTTTTCGTAGATAATGCAGCTATAATCCATTTCATATTGATAAGCATCATTTTTAAAGCTTTAGTCCAATTNTCTTCAGAA ] [-] EMBL CD083922 [ TGATAAGCATCATTTTTAAAGCTTTAGTCCAATTTTCTTCAGAATTCCCATTCCATTTGATCGAATAGATTTGACCATCAGGATCTTGTAATTTTCCCTTATCTTTAATGCGAAAAGGCAATTGCATATTGGATGTATGTTCTATAATTTGTTGAGCTTGATTTAAACAGTCTAAAAAATTTATCATAGCTGTATCGAATTTGCCAGCGCTCAATAATCGCATGCCACCAGTAGTATAATAAAGAGGAAATTCTTTCGATATCGATAGTTGAACCATTTTTGACTGGCTACCCATTGGCACAATACGATGATTTTGAAAAATGTAATTAAGTTTCTTCCCGATGCACTGTAATAATAAAGCACATGACCCCAAGCTGCATTGATCTCTCCCCAACCAACAGGACGATTAGGCAAACGACCACCTCGTGCCG] consensusID : consensus_9467#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 709 fasta sequence [TTAAACAGTCTAAANAATTTATCATAGCTGTATCGAATTTGCCAGCGCTCAATAATCGCATGCCACCAGTAGTATAATAAAGAGGAAATTCTTTCGATATCGATAGTTGAACCATTTTTGACTGGCTACCCATTGGCACAATACGATGATTTTGAAAAATGTAATTAAGTTTCTTCCCGATGCACTGTAATAATAAAGCACATTGACCCCAAGCTGCATTGATCTCTCCCCAACCAACAGGACGATTAGGCAAACGACCAAGATGTAATCCATTAATTACACCAATATGACCATCGTACCATATAGGAAAAGCAATATTAAGTACATTCGTACGCTGTAATCTATGTAAATGACTTCGAGCATAGCTTAGTCGAGATTCTAAGCACTGCATTTCTTCTTCTGCTTCCATTAAGGCCAGTTTTTGATCG-TTATA-TTGAGTTGTAGCTCGATCTAATTC-TTCTGTACGCTTTTCTAG-TTCAACTGTATCTTGAATTATTTGTTTATCTAATTTGTCATTTTCAATTAATAATTCATTTAAGTTAGATTGCAAAGCATTCAATGTTTGTTCAAGTTCACTTACATTTGTACCATATTTTTTACGATTTGATGTATAATTTTTAATTTTTTTATCTATTTTCACAGCATCACTACTATCACCCATGTCGTTATCGTCGTCGTCGTCGTCGCCTCGTGCCAAATTNTTGGCTGG] [-] EMBL CD079588 [TTAAACAGTCTAAANAATTTATCATAGCTGTATCGAATTTGCCAGCGCTCAATAATCGCATGCCACCAGTAGTATAATAAAGAGGAAATTCTTTCGATATCGATAGTTGAACCATTTTTGACTGGCTACCCATTGGCACAATACGATGATTTTGAAAAATGTAATTAAGTTTCTTCCCGATGCACTGTAATAATAAAGCACATTGACCCCAAGCTGCATTGATCTCTCCCCAACCAACAGGACGATTAGGCAAACGACCAAGATGTAATCCATTAATTACACCAATATGACCATCGTACCATATAGGAAAAGCAATATTAAGTACATTCGTACGCTGTAATCTATGTAAATGACTTCGAGCATAGCTTAGTCGAGATTCTAAGCACTGCATTTCTTCTTCTGCTTCCATTAAGGCCAGTTTTTGATCG TTATA TTGAGTTGTAGCTCGATCTAATTC TTCTGTACGCTTTTCTAG TTCAACTGTATCTTGAATTATTTGTTTATCTAATTTGTCATTTTCAATTAATAATTCATTTAAGTTAGATTGCAAAGCATTCAATGTTTGTTCAAGTTCACTTACATTTGTACCATATTTTTTACGATTTGATGTATAATTTTTAATTTTTTTATCTATTTTCACAGCATCACTACTATCACCCATGTCGTTATCGTCGTCGTCGTCGTCGCCTCGTGCCAAATTNTTGGCTGG] [-] EMBL CD144536 [ actaATTTTGAAAAATGTAATTAAGTTTCTTCCCGATGCACTGTAATAATAAAGCACATTGACCCCAAGCTGCATTGATCTCTCCCCAACCAACAGGACGATTAGGCAAACGACCAAGATGTAATCCATTAATTACACCAATATGACCATCGTACCATATAGGAAAAGCAATATTAAGTACATTCGTACGCTGTAATCTATGTAAATGACTTCGAGCATAGCTTAGTCGAGATTCTAAGCACTGCATTTC ] [-] EMBL CD071772 [ ATTTTGAAAAATGTAATTAAGTTTCTTCCCGATGCACTGTAATAATAAAGCACATTGACCCCAAGCTGCATTGATCTCTCCCCAACCAACAGGACGATTAGGCAAACGACCAAGATGTAATCCATTAATTACACCAATATGACCATCGTACCATATAGGAAAAGCAATATTAAGTACATTCGTACGCTGTAATCTATGTAAATGACTTCGAGCATAGCTTAGTCGAGATTCTAAGCACTGCATTTC ] [+] EMBL CD201106 [ CCCAAGCTGCATTGATCTCTCCCCAACCAACAGGACGATTAGGCAAACGACCAAGATGTAATCCATTAATTACACCAATATGACCATCGTACCATATAGGAAAAGCAATATTAAGTACATTCGTACGCTGTAATCTATGTAAATGACTTCGAGCATAGCTTAGTCGAGATTCTAAGCACTGCATTT ] [-] EMBL SM028 [ ATTTCTTCTTCGTCTTCCATTAAGGCCAGTTTTTGATCGTTTATATTTGAGTTGTAGCTCGATCTAATTCTTTCTGTACGCTTTTCTAGTTTCAACTGTATCTTGAATTATTTGTTTATCTAATTTGTCATTTTCAATTAATAATTCATTTAAGTTAGATTGCAAAGCATTCAATGTTTGTTCAAGTTCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9467#0 GGTTTTTTTTTAAATAGCAGTACATGAATTCATTTTGAAGAAAAAGAATTTGTAGACAAT 60 consensus_9467#1 ---------TTAAACAGT--CTAAANAATTTATCATAGCTGTATCGAATTTGCCAGCGCT 49 ***** ** * **** ** * * ******* * * consensus_9467#0 CAATAAAGAAGGTAAATGTAGCAATGAAAGAATGGAACAATTATATACACAATTTTTTTT 120 consensus_9467#1 CAATAA------------TCGCATGCCACCAGTAGTATAATAAAGAGG--AAATTCTTTC 95 ****** * *** * * * * * *** * ** ** *** consensus_9467#0 GGTTTTGATAAAAGAAGAAAGACTTTTTAATTCACCCATTACTGATGTAAAAAAAAACGA 180 consensus_9467#1 GATATCGATAGTTGAACCA----TTTTTGACTGGCTACCCATTGGCACAATACGA----- 146 * * * **** *** * ***** * * * * ** ** * * consensus_9467#0 GCAAACAATCACTAGTTCATCATGGATGATGTAACAATTATTGAATAAACTAAAAAATAT 240 consensus_9467#1 ----------------TGATTTTGAAAAATGTAATTAAGTTTCTTCCCGATGCACTGTAA 190 * ** ** * ****** * ** * * ** consensus_9467#0 TAGTGAAAGACAATACAATAATTGACAATCATCCACAATTATAATCATGTACTGTACAAA 300 consensus_9467#1 TAATAAAGCACA---------TTGACCCCAAGCTGCATTGATCTCTCCCCAACCAACAGG 241 ** * ** *** ***** * * ** * ** * *** consensus_9467#0 AAGAGAAGGAGAATTACATTACAACATTTTAACTCTCACATACCAACAAACTATTATTAT 360 consensus_9467#1 ACGATTAGGCAAACGAC----CAAGATGTAATCCATTA-ATTACACCAA--TATGACCAT 294 * ** *** ** ** *** ** * * * * * ** ** *** *** * ** consensus_9467#0 TGCATTATTTATCCATAGTACTAAGAGTTGATTGAATATTAATTGCTTTTTTATTCTTTT 420 consensus_9467#1 CGTACCATATAGGAAAAGCAATA--------TTAAGTAC--ATTCGTACGCTGTAATCTA 344 * * ** ** * ** * ** ** * ** *** * * * * * consensus_9467#0 TCGTAGATAA-TGCAGCTATAATCCATTTCATATTGATAAGCATCATTTTTAAAGCTTTA 479 consensus_9467#1 T-GTAAATGACTTCGAGCATAGCTTAGTCGAGATTC-TAAGCACTGCATTT-----CTTC 397 * *** ** * * * *** * * * *** ****** *** ** consensus_9467#0 GTCCAATTTTCTTCAGAATTCCCATTCCATTTGATCGAATAGATTTGACCATCAGGATCT 539 consensus_9467#1 TTCTGCTTCCATTAAGG----CCAGTT--TTTGATCGT-TATATTGAGTTGT-AGCTCGA 449 ** ** ** ** *** * ******** ** *** * ** consensus_9467#0 TGTAATTTTCCCTTATCTTTAATGCGAAAAGGCAATTGCATATTGGAT-GTATGTTC-TA 597 consensus_9467#1 TCTAATTCTTCTGTACGCTT----TTCTAGTTCAACTGTATCTTGAATTATTTGTTTATC 505 * ***** * * ** ** * *** ** ** *** ** * **** * consensus_9467#0 TAATTTGTTGAGCTTGATTTAAACAGTCTAAAAAATTTATCATAGCTGTATCGAATTTGC 657 consensus_9467#1 TAATTTGTCATTTTCAATT-----------AATAATTCATTTAAGTTAGATTGCAA---- 550 ******** * *** ** **** ** ** * ** * * consensus_9467#0 CAGCGCTCAATAATCGCATGCCACCAGTAGTATAATAAAGAGGAAATTCTTTCGATATCG 717 consensus_9467#1 -AGCATTCAATGTTTGTTCAAGTTCACT--TACATTTGTACCATATTTTTTACGAT---- 603 *** ***** * * ** * ** * * * ** ** **** consensus_9467#0 ATAGTTGAACCATTTTTGACTGGCT-ACCCATTGGCACAATACGATGATTTTGAAAAATG 776 consensus_9467#1 -TTGATGTATAATTTTTAATTTTTTTATCTATTTTCACAGCATCACTACTATCACCCATG 662 * * ** * ****** * * * * * *** **** * * * * * * *** consensus_9467#0 TAATTAAGTTTCTTCCCGATGCACTGTAATAATAAAGCACATGACCCCAAGCTGCATTGA 836 consensus_9467#1 TCGTTATCGTCGTCGTCGTCGTCGCCTCGTGCCAAATTNT-TGGCTGG------------ 709 * *** * * ** * * * *** ** * consensus_9467#0 TCTCTCCCCAACCAACAGGACGATTAGGCAAACGACCACCTCGTGCCG 884 consensus_9467#1 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||