These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 898 fasta sequence [TTGGTAGTATGGATATCCCGTTGGATAATTCA-GGCGGACCCCCAACTATTTTCAGTTCTGACCAGCCTATCAACATCTTGTCCCAAAACCAACTTCATATTTCGGAACCAGTAAATGATGTAAAAAATTCAAACCTAATCACTAATGAAACAAAATCAGAAAGTCATACCCTTACAGAACGCCTTATTCAGGCGGTTCAATTGCCCTCTGAACCCACTGGTCATTGTTCAATGGTACTTCAAGAAAGAGTAGAGCGAGCAGTGCGTCGTATGCGCTTGGATATAAGCTATGATCCTAACAGAGCAATTCAAGATAACAAAGCGTTCCGTAACCCCAGTATTTATGAAAAGCTGATCGATTTTTTGAAAATCGACGAGAAAGGGACTAACTTCTCTACGGATATTTATGATCCCTATCGTTGGACTCCGCAGTCATACTATGAAGAACTTGCAAAGGTGCAAAATCGTGAAATCGACAGACTGATGAAAATGCAAAAAGAACTTAAAAAATCTGACCCAAATACAACGAATGCAAACAACAGCACAAGTGCAAATGCACCTAAAAATCCAATTACTAGCACAGACAAACCCAGTGCAACATCTGGAGGGTCCGTTTCTACGGGGTACATAGAACCGAAGAAACCAAGTAAATGGGACACAGGTATTCCTTCCAACGTTCAACCCCATGACACATCCTCAGAATCTGTTAAGTTATCTGTTCCTCCCATTGGAAATTTGATCAAACGAAATTAAAACTAATTCAAATTACCAGATAATAACTTTGAAATAAGCTGCTCTTTTTATAATTTTTCGAAAATATTTTTCAATATGTTAATACAACAATAAAAGTGAAATACTCAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCT] [-] EMBL CD140919 [TTGGTAGTATGGATATCCCGTTGGATAATTCA GGCGGACCCCCAACTATTTTCAGTTCTGACCAGCCTATCAACATCTTGTCCCAAAACCAACTTCATATTTCGGAACCAGTAAATGATGTAAAAAATTCAAACCTAATCACTAATGAAACAAAATCAGAAAGTCATACCCTTACAGAACGCCTTATTCAGGCGGTTCAATTGCCCTCTGAACCCACTGGCCATTGTTCAATGGTACTTCAAGAAAGAGTAGAGCGAGCAGTGCGTCGTATGCGCTTGG ] [+] EMBL CD082937 [ ATCCCGTTGGATAATTCAGGGCGGACCCCCAACTATTTTCAGTTCTGACCAGCCTATCAACATCTTGTCCCAAAACCAACTTCATATTTCGGAACCAGTAAATGATGTAAAAAATTCAAACCTAATCACTAATGAAACAAAATCAGAAAGTCCTACCCTTACAGAACGCCTTATTCAGGTGGTTCAATTGCCCTCTGAACCCACTGGTCATTGTTCAATGGTACTTCAAGAAAGAGTAGAGCGAGCAGTGCGTCGTATGCGCTTGGATATAAGCTATGATCCTAACAGAGCAATTCAAGATAACAAAGCGTTCCGTAACCCCAGTATTTATGAAAAGCTGATCGATTTTTTGAAAATCGACGAGAAAGGGACTAACTTCTCTACGGATATTTATGATCCCTATCGTTGGACTCCGCAGTCATACTATGAAGAACTTGCAAAGGTGCAAAATCGTGAAATCGACAGACTGATGAAAATGCAAAAAGAACTTAAAAAATCTGACCCAAATACAACGAATGCAAACAACAGCACAAGTGCAAATGCACCTAANAATCCAATTACTAGCACAGACAAACCCAGTGCAACATCTGGAGGGTC ] [+] EMBL CD083322 [ gcacgaggCGCCTTATTCAGGCGGTTCAATTGCCCTCTGAACCCACTGGTCATTGTTCAATGGTACTTCAAGAAAGAGTAGAGCGAGCAGTGCGTCGTATGCGCTTGGATATCAGCTATGATCCTAACAGAGCAATTCAAGATAACAAAGCGTTCCGTAACCCCAGTATTTATGAAAAGCTGATCGATTTTTTGAAAATCGACGAGAAAGGGACTAACTTCTCTACGGATATTTATGATCCCTATCGTTGGACTCCGCAGTCATACTATGAAGAACTTGCAAAGGTGCAAAATCGTGAAATCGATAGACTGATGAAAATGCAAAAAGAACTTAAGAAATCTGACCCAAATACAACGAATGCAAACAACAGCACAAGTGCAAATGCACCTAAAAATCCAATTACTAGCACAGACAAACCCAGTGCAACATCTGGAGGGTCCGTTTCTACGGGGTACATAGAACCGAAGAAACC AGTTAATGGGACACAGGTA TCCTTCCA ] [-] EMBL CD076521 [ GCTTGGATATAAGCTATGATCCTAACAGAGCAATTCAAGATAACANAGCGTTCCGTAACCCCAGTATTTATGAAAAGCTGATCGATTTTTTGAAAATCGACGAGAAAGGGACTAACTTCTCTACGGATATTTATGATCCCTATCGTTGGACTCCGCAGTCATACTATGAAGAACTTGCAAAGGTGCAAAATCGTGAAATCGACAGACTGATGAAAATGCAAAAAGAACTTAAAAAATCTGACCCAAATACAACGAATGCAAACAACAGCACAAGTGCAAATGCACCTAAAAATCCAATTACTAGCACAGACAAACCCAGTGCAACATCTGGAGGGTCCGTTTCTACGGGGTACATAGAACCGAAGAAACCAAGTAAATGGGACACAGGTATTCCTTCCAACGTTCAACCCCATGACACATCCTCAGAATCTGTTAAGTTATCTGTTCCTCCCATTGGAAATTTGATCAAACGAAATTAAAACTAATTCAAATTACCAGATAATAACTTTGAAATAAGCTGCTCTTTTTATAATTTTTCGAAAATATTTTTCAATATGTTAATACAACAATAAAAGTGAA ] [-] EMBL AI067980 [ TTATGAAAAGCTGATCGATTTTTTGAAAATCGACGAGAAAGGGACTAACTTCTCTACGGATATTTATGATCCCTATCGTTGGACTCCGCAGTCATACTATGAAGAACTTGCAAAGGTGCAAAATCGTGAAATCGACAGACTGATGAAAATGCAAAAAGAACTTAAAAAATCTGACCCAAATACAACGAATGCAAACAACAGCACAAGTGCAAATGCACCTAAAAATCCAATTACTAGCACAGACAAACCCAGTGCAACATCTGGAGGGTCCGTTTCTACGGGGTACATAGAACCGAAGAAACCAAGTAAATGGGACACAGGTATTCCTTCCAACGTTCAACCCCATGACACATCCTCAGAATCTGTTAAGTTATCTGTTCCTCCCATTGGAAATTTGATCAAACGAAATTAAAACTAATTCAAATTACCAGATAATAACTTTGAAATAAGCTGCTCTTTTTATAATTTTTCGAAAATATTTTTCAATATGTTAATACAACAATAAAAGTGAAATACTCAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCT] [-] EMBL AI067323 [ AAGGAACTAAAAAAATCTGACCCAAATACAACGAATGCAAACAACAGCACAAGTGCAAATGCACCTAAAAATCCAATTACTAGCACAGACAAACCCAGTGCAACATCTGGAGGGTCCGTTTGTACGGGGTACATAGAACCGAAGAAACCAAGTAAATGGGACACAGGTATTCCTTCCAACGTTCAACCCCATGACACATCCTCAGAATCTGTTAAGTTATCTGTTCCTCCCATTGGAAATTTGATCAAACGAAATTAAAACTAATTCAAATTACCAGATAATAACTTTGAAATAAGCTGCTCTTTTTATAATTTTTCGAAAATATTTTT ] consensusID : consensus_9470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [AAATCGACGAGAAAGGGACTAACTTCTCTACGGATATTTATGATCCCTATCGTTGGACTCCGCAGTCATACTATGAAGAACTTGCAAAGGTGCAAAATCGTGAAATCGACAGACTGATGAAAATGCAAAAAGAACTTAAAAAATCTGACCCAAATACAACGAATGCAAACAACAGCACAAGTGCAAATGCACCTAAAAATCCAATTACTAGCACAGACAAACCCAGTGCAACATCTGGAGGGTCCGTTTCTACGGGGTACATAGAGACTGTTACGCAATCTGATGTCTGGAAGGCCTTCGGAATAACATTACAGTCTTCTTTATCATCAGAATCTCGACTACAGAAATGTTGATCAAGTCTCTTCATATCCTCTGGAAAATTTGAATACAATAGTTTTTTTATGGATCGAATACGTTTGAAGACATCATCCANTTTCCTTTTTTAGTGATATTATTGTCTTTGTATGAGCAGTTAGTTCTGTAAACAGTATTTTACATCTTCCGTCAGAGAGCTCAGAACAGGTTCNGAAGCATCTC] [+] EMBL AA999214 [AAATCGACGAGAAAGGGACTAACTTCTCTACGGATATTTATGATCCCTATCGTTGGACTCCGCAGTCATACTATGAAGAACTTGCAAAGGTGCAAAATCGTGAAATCGACAGACTGATGAAAATGCAAAAAGAACTTAAAAAATCTGACCCAAATACAACGAATGCAAACAACAGCACAAGTGCAAATGCACCTAAAAATCCAATTACTAGCACAGACAAACCCAGTGCAACATCTGGAGGGTCCGTTTCTACGGGGTACATAGAGACTGTTACGCAATCTGATGTCTGGAAGGCCTTCGGAATAACATTACAGTCTTCTTTATCATCAGAATCTCGACTACAGAAATGTTGATCAAGTCTCTTCATATCCTCTGGAAAATTTGAATACAATAGTTTTTTTATGGATCGAATACGTTTGAAGACATCATCCANTTTCCTTTTTTAGTGATATTATTGTCTTTGTATGAGCAGTTAGTTCTGTAAACAGTATTTTACATCTTCCGTCAGAGAGCTCAGAACAGGTTCNGAAGCATCTC] consensusID : consensus_9470#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 412 fasta sequence [CTTGATTCAAATTATAAGCCTATCATACTTTTAATTTACAGAACCGAAGAAACCAAGTAAATGGGACACAGGTATTCCTTCCAACGTTCAACCCCATGACACATCCTCAGAATCTGTTAAGTTATCTGTTCCTCCCATTGGAAATTTGATCAAACGAATTAAAACTATTTCAATTACCAGATAATAACTTTGAAATAAGCTGCTCTTTTTATAATTTTTCGAAAATATTTTTCAATATGTTAATACAACAATAAAGGGAAATACTCACCATGTTAGCTTGTGTAAAAGAGATCTTTTGCTCCAATCAACAAACTGTCAGAGATAAACGTTTATGCGTAGATATATGAGTAGGATTAACTGAGGTCCATGAAGAACTGTCTCCTGCGTGTTGTGAGGCGACGCTGCTGCGATA] [+] EMBL AW146497 [CTTGATTCAAATTATAAGCCTATCATACTTTTAATTTACAGAACCGAAGAAACCAAGTAAATGGGACACAGGTATTCCTTCCAACGTTCAACCCCATGACACATCCTCAGAATCTGTTAAGTTATCTGTTCCTCCCATTGGAAATTTGATCAAACGAATTAAAACTATTTCAATTACCAGATAATAACTTTGAAATAAGCTGCTCTTTTTATAATTTTTCGAAAATATTTTTCAATATGTTAATACAACAATAAAGGGAAATACTCACCATGTTAGCTTGTGTAAAAGAGATCTTTTGCTCCAATCAACAAACTGTCAGAGATAAACGTTTATGCGTAGATATATGAGTAGGATTAACTGAGGTCCATGAAGAACTGTCTCCTGCGTGTTGTGAGGCGACGCTGCTGCGATA] consensusID : consensus_9470#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence [GGTGCTGATCATATATCTATGCATAAACGTTTATCTCTTGACAGTTGTTGATTGGAGCAAATGATCTCTTGTAACAAGCTAACATGGTTGAGTATTTCATTTTATAGTTGTATTAACATATAGAAAAATATTTTCGAAAAATTATAGAGAGAGCAGCTTATTTCAAAGTTATTATCTGGTAA] [+] EMBL CD134436 [GGTGCTGATCATATATCTATGCATAAACGTTTATCTCTTGACAGTTGTTGATTGGAGCAAATGATCTCTTGTAACAAGCTAACATGGTTGAGTATTTCATTTTATAGTTGTATTAACATATAGAAAAATATTTTCGAAAAATTATAGAGAGAGCAGCTTATTTCAAAGTTATTATCTGGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9470#2 ------------------------------------------------------------ consensus_9470#0 TTGGTAGTATGGATATCCCGTTGGATAATTCAGGCGGACCCCCAACTATTTTCAGTTCTG 60 consensus_9470#1 ------------------------------------------------------------ consensus_9470#3 ------------------------------------------------------------ consensus_9470#2 ------------------------------------------------------------ consensus_9470#0 ACCAGCCTATCAACATCTTGTCCCAAAACCAACTTCATATTTCGGAACCAGTAAATGATG 120 consensus_9470#1 ------------------------------------------------------------ consensus_9470#3 ------------------------------------------------------------ consensus_9470#2 ------------------------------------------------------------ consensus_9470#0 TAAAAAATTCAAACCTAATCACTAATGAAACAAAATCAGAAAGTCATACCCTTACAGAAC 180 consensus_9470#1 ------------------------------------------------------------ consensus_9470#3 ------------------------------------------------------------ consensus_9470#2 ------------------------------------------------------------ consensus_9470#0 GCCTTATTCAGGCGGTTCAATTGCCCTCTGAACCCACTGGTCATTGTTCAATGGTACTTC 240 consensus_9470#1 ------------------------------------------------------------ consensus_9470#3 ------------------------------------------------------------ consensus_9470#2 ------------------------------------------------------------ consensus_9470#0 AAGAAAGAGTAGAGCGAGCAGTGCGTCGTATGCGCTTGGATATAAGCTATGATCCTAACA 300 consensus_9470#1 ------------------------------------------------------------ consensus_9470#3 ------------------------------------------------------------ consensus_9470#2 ------------------------------------------------------------ consensus_9470#0 GAGCAATTCAAGATAACAAAGCGTTCCGTAACCCCAGTATTTATGAAAAGCTGATCGATT 360 consensus_9470#1 ------------------------------------------------------------ consensus_9470#3 ------------------------------------------------------------ consensus_9470#2 ------------------------------------------------------------ consensus_9470#0 TTTTGAAAATCGACGAGAAAGGGACTAACTTCTCTACGGATATTTATGATCCCTATCGTT 420 consensus_9470#1 ------------------------------------------------------------ consensus_9470#3 ------------------------------------------------------------ consensus_9470#2 ------------------------------------------------------------ consensus_9470#0 GGACTCCGCAGTCATACTATGAAGAACTTGCAAAGGTGCAAAATCGTGAAATCGACAGAC 480 consensus_9470#1 ------------------------------------------------------------ consensus_9470#3 ------------------------------------------------------------ consensus_9470#2 ------------------------------------------------------------ consensus_9470#0 TGATGAAAATGCAAAAAGAACTTAAAAAATCTGACCCAAATACAACGAATGCAAACAACA 540 consensus_9470#1 -------------------------------------AAATCGACGAGAAAGGGACTAAC 23 consensus_9470#3 ------------------------------------------------------------ consensus_9470#2 -----------------------------------------------CTTGATTCAAATT 13 consensus_9470#0 GCACAAGTGCAAATGCACCTAAAAATCCAATTACTAGCACAGACAAACCCAGTGCAACAT 600 consensus_9470#1 TTCTCTACGGATATTTATGATCCCTATCGTTGGACTCCGCAGTCATACTATGAAGAACTT 83 consensus_9470#3 ------------------------------------------------------------ consensus_9470#2 ATAAGCCTATCATACTTTTA--ATTTACAGAACCGAAGAAACCAAGTAAATGGGACACAG 71 consensus_9470#0 CTGGAGGGTCCGTTTCTACGGGGTACATAGAACCGAAGAAACCAAGTAAATGGGACACAG 660 consensus_9470#1 GCAAAGGTGCAAAATCGTGAA-ATCGACAGA-CTGATGAAA--ATGCAAAAAGAACTTAA 139 consensus_9470#3 ----------------------------------------------GGTGCTGATCATAT 14 * * * consensus_9470#2 GTATTCCTTCCAACGTTCAACC--------CCATGACACATCCTCAGAATCTGTTAAGTT 123 consensus_9470#0 GTATTCCTTCCAACGTTCAACC--------CCATGACACATCCTCAGAATCTGTTAAGTT 712 consensus_9470#1 AAAATCTGACCCAAATACAACGAATGCAAACAACAGCACAAGTGCAAATGCACCTAAAAA 199 consensus_9470#3 ATCTATGCATAAACGTTTATCT---------CTTGACAGTTGTT--GATTGGAGCAAATG 63 * * * * ** * ** consensus_9470#2 ATCTGTTCCTCCCA-TTGG-AAATTTGATCAAACGAA-TTAAAA-CTATTTCAA-TTACC 178 consensus_9470#0 ATCTGTTCCTCCCA-TTGG-AAATTTGATCAAACGAAATTAAAA-CTAATTCAAATTACC 769 consensus_9470#1 TCCAATTACTAGCA-CAGACAAACCCAGTGCAACATCTGGAGGGTCCGTTTCTACGGGGT 258 consensus_9470#3 ATCTCTTGTAACAAGCTAACATGGTTGAGTATTTCATTTTATAG-TTGTATTAACATATA 122 * ** * * * * * consensus_9470#2 AGATAATAACTTTGAAATAAGCTGCTCTTTTTATAATTTTTCGAA---------AATATT 229 consensus_9470#0 AGATAATAACTTTGAAATAAGCTGCTCTTTTTATAATTTTTCGAA---------AATATT 820 consensus_9470#1 ACATAGAGACTGTTACGCAATCTGATGTCTGGAAGGCCTTCGGAATAACATTACAGTCTT 318 consensus_9470#3 GAAAAATATTTTCGAAAAATTATAGAGAGAGCAGCTTATTTCAAA---------GTTATT 173 * * * * * * * ** ** * ** consensus_9470#2 TTTCAATATGTTAAT----ACAACAATAAAGG-GA--AATACTCACCATGTT-------- 274 consensus_9470#0 TTTCAATATGTTAAT----ACAACAATAAAAGTGA--AATACTCAAAAAAAA-------- 866 consensus_9470#1 CTTTATCATCAGAATCTCGACTACAGAAATGTTGATCAAGTCTCTTCATATCCTCTGGAA 378 consensus_9470#3 ATCTGGTAA--------------------------------------------------- 182 * * consensus_9470#2 AGCTTGTGTAAAAGAGATCTTTT---GCTCCAATCAACAAACTGTCAGAGATAAACGTTT 331 consensus_9470#0 AAAAAAAAAAAAAAAAAACATGC---CATGCAGCT------------------------- 898 consensus_9470#1 AATTTGAATACAATAGTTTTTTTATGGATCGAATACGTTTGAAGACATCATCCANTTTCC 438 consensus_9470#3 ------------------------------------------------------------ consensus_9470#2 ATGCGTAGATATATGAGTAGGATTAACTGAG------GTCCATGAAGAACTGTCTCCTGC 385 consensus_9470#0 ------------------------------------------------------------ consensus_9470#1 TTTTTTAGTGATATTATTGTCTTTGTATGAGCAGTTAGTTCTGTAAACAGTATTTTACAT 498 consensus_9470#3 ------------------------------------------------------------ consensus_9470#2 GTGTTGTGAGGCGACGCTGCTGCGATA------------ 412 consensus_9470#0 --------------------------------------- consensus_9470#1 CTTCCGTCAGAGAGCTCAGAACAGGTTCNGAAGCATCTC 537 consensus_9470#3 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||