These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9479#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1374 fasta sequence [CTGAACATTTGAAGTGTTTAGTACATCCATAACCAGAGGAGACTTTGAAACTTTCTTCATTAAACCAAGGAATTCTGTACTCACACTCTGGAATCTTTGTGATTCTTGAGGTAATAAAACTTTGATATCGGCAGAACCTGCGAAAATACCATCAAGGTATACCCAACGACGTTGTACATCTATCCAAACATCAAACAAAGCGTTAATCCTG-TTAAAC-GATCTTCCCAGGCCAAGGCTTCCTCCTCAAATTGTTTAAAATAGGGTGATAACTTCATGGCACTCAAACTGTTTATATGTTCTTTGATGCGGTTAAACAAATCGTCCCAACCGCGAATTAGTCGACATTTATCCTGATAGGGAATAAGTTCAAGTGTATAGTTCTTCCATACTTCAGTGACTTGTTTAAGAAATTCTTCTAAGGCTTTCTCACCCTGAGCAACCAGTAAGATTTCTTTAATTACTGCCTCATTTTGTTGGAGATCTAATTCCCACATATGACCAAGTGTTAATTCAGACATAGTCCAATTAACGTTAAGTTTTTTCATTAAAGACTTCCAATGA-CGATCTTTTAATGCTTCCGACTTCAATTCCACTATCATAACATTGGACTTGGCATAATTTTGAAGAGTTCGTTTGACGTGTTCATAAGATGAATATTGTCTAAGTCGCGCTGGAAGTTCCTTTAATTGTCCTGCAAGTGCGTCTAACTGTTGTCTTAGCTTGCGCGGTTGGACAGTTTGCCAAGGAGTCTCTTTCATTAACTCGATTTGTTCCCAAACATGGGATAATTCAAGCCAAACATTTTTGAGATCCTGAAGTTCTTCAAAAGCCACTTGTACACGTTGTTCTGTTGGTGACAGTAAACCGGATTCAGTCAATTCTAAAGCTTCTTTAGCACGTTGAATATTATCACGTTCTTCACGTAGACGATTGAACTTCCCTTCTAATATAGTTAGTTGATTGACAGCCTCTTCCGGTTTTAGATTACCGGCAATTGGTTTCTCCTTTTCCCAAGATGATAATAATTCAGAGGTTTTACCCTCAACAATCTTATCTTCAGCTACAACTTTCATTTGAAGACTGGCCACTTGAGTACCAATACTATTTTCTTTTCGTCGTAAAATCTCTTGGAATGCACTCCATTCACCTAGAATATTTTCTGAATCCAACCAATTTGAAGGGAACTGGAAACGATCACGATAGAGAATATTTTGACCAGAACGATAGAGTTCCACTTGTTTTTCCCACACCTTCATTTTTCGTTTGACAGTCTGTGTATATGTGATAGCATTAACAGCTTCACCAGTACTTCCAGCTTCTATGGCCTGTTGTTCTAGATCGAGGGCGGCCTTAGATACTTGTGAGAATAGGTCT] [+] EMBL CD149024 [CTGAACATTTGAAGTGTTTAGTACATCCATAACCAGAGGAGACTTTGAAACTTTCTTCATTAAACCAAGGAATTCTGTACTCACACTCTGGAATCTTTGTGATTCTTGAGGTAATAAAACTTTGATATCGGCAGAACCTGCGAAAATACCATCAAGGTATACCCAACGACGTTGTACATCTATCCAAACATCAAACAAAGCGTTAATCCTGTTTAAAC GATCTTCCCAGGCCAAGGCTTCCTCCTCAAATTGTTTAAAATAGGGTGATAACTTCATGGCACTCAAACTGTTTATATGTTCTTTGATGCGGTTAAACAAATCGTCCCAACCGCGAATTAGTCGACATTTATCCTGATAGGGAATAAGTTCAAGTGTATAGTTCTTCCATACTTCAGTGACTTGTTTAAGAAATTCTTCTAAGGCTTTCTCACCCTGAGCAACCAGTAAGATTTCTTTAATTACTGCCTCATTTTGTTGGAGATCTAATTCCCACATATGACCAAGTGTTAATTCAGACATAGTCCAATTAACGTTAAGTTTTTTCATTAAAGACTTCCAATGAGCGAac ] [-] EMBL CD138025 [ ATCAAACAAAGCGTTAATCCTG TTAAACNGATCTTCCCAGGCCAAGGCTTCCTCCTCAAATTGTTTAAAATAGGGTGATAACTTCATGGCACTCAAACTGTTTATATGTTCTTTGATGCGGTTAAACAAATCGTCCCAACCGCGAATTAGTCGACATTTATCCTGATAGGGAATAAGTTCAAGTGTATAGTTCTTCCATACTTCAGTGACTTGTTTAAGAAATTCTTNTAAGGCTTTCTCACCCTGAGCAACCAGTAAGATTTCTTTAATTACTGCCTCATTTTGTTGGAGATCTAATTCCCACATATGACCAAGTGTTAATTCAGACATAGTCCAATTGACGTTAAGTTTTTTCATTAAAGACTTCCAATGA CGATCTTTTAATGCTTCCGACTTCAATTCCACTATCATAACATTGGACTTGGCATAATTTTGAGGAGTTCGTTTGACGTGTTCATAAGATG ] [+] EMBL CD184827 [ AGATTTCTTTAATTACTGCCTCATTTTGTTGGAGATCTAATTCCCACATATGACCAAGTGTTAATTCAGACATAGTCCAATTGACGTTAAGTTTTTTCATTAAAGACTTCCAATGA CGATCTTTTAATGCTTCCGACTTCAATTCCACTATCATAACATTGGACTTGGCATAATTTTGAAGAGTTCGTTTGACGTGTTCATAAGATGAATATTGTCTAAGTCGCGCTGGAAGTTCCTTTAATTGTCCTGCAAGTGCGTCTAACTGTTGTCTTAGCTTGCGCGGTTGGACAGTTTGCCAAGGAGTCTCTTTCATTAACTCGATTTGTTCCCAAACATGGGATAATTCAAGCCAAACATTTTTGAGATCCTGAAGTTCTTCAAAAGCCACTTGTACACGTTGTTCTGTTGGTGA ] [+] EMBL CD116528 [ GTGTTAATTCACACATAGTCCAATTAACGTTAAGTTTTTTCATTAGAGACTTCCAATGA CGATCTTTTAATGCTTCCGACTTCAATTCCACTATCATAACATTGGACTTGGCATAATTTTGAAGAGTTCGGTTGACGTGTTCATAAGATGAATATTGTCTAAGTCGCGCTGGAAGTTCCTTTAATTGTCCTGCAAGTGCGTCTAACTGTTGTCTTAGCTTGCGAGGTTGGACAGTTTGCCAAGGAGTCTCTTTCATTAACTCGATTTGTTCCCAAACATGGGATAGTTCAAGCCAAACATTTTTGAGATCCTGAAGATCTTCAAAAGCCACTTGTACACG ] [-] EMBL CD184860 [ TTAAAGACTTCCAATGA CGATCTTTANATGCTTCCGACTTCAATTCCACTATCATAACATTGGACTTGGCATAATTTTGAAGAGTTCGTTTGACGTGTTCATAAGATGAATATTGTCTAAGTCGCGCTGGAAGTTCCTTTAATTGTCCTGCAAGTGCGTCTAACTGTTGTCTTAGCTTGCGCGGTTGGACAGTTTGCCAAGGAGTCTCTTTCATTAACTCGATTTGTTCCCAAACATGGGATAATTCAAGCCAAACATTTTTGAGATCCTGAAGTTCTTCAAAAGCCACTTGTACACGTTGTTCTGTTGGTGACAGTAAACCGGATTCAGTCAATTCTAAAGCTTCTTTAGCACGTTGAATATTATCACGTTCTTCACGTAGACGATTGAACTTCCCTTCTAATATAGTTAGTTGATTGACAGCCTCTTCCGGTTTTAGATTACCGGCAATT ] [+] EMBL CD183238 [ GTGCGTCTAACTGTTGTCTTAGCTTGCGCGGTTGGACAGTTTGCCAAGGAGTCTCTTTCATTAACTCGATTTGTTCCCAAACATGGGATAATTCAAGCCAAACATTTTTGAGATCCTGAAGTTCTTCAAAAGCCACTTGTACACGTTGTTCTGTTGGTGACAGTAAACCGGATTCAGTCAATTCTAAAGCTTCTTTAGCACGTTGAATATTATCACGTTCTTCACGTAGGCGATTGAACTTCCCTTCTAATATAGTTAGTTGATTGACAGCCTCTTCCGGTTTTAGATTACCGGCAATTGGTTTCTCCTTTTCCCAAGATGATAATAATTCAGAGGTTTTACCCTCAACAATCTTATCTTCAGCTACAACTTTCATTTGAAGACTGGCCACTTGAGTACCAATACTATTTTCTTTTCGTCGTAAAATCTCTTGGAATGCACTCCATTCACCTAGAATATTTTCTGAATCCAACCAATTTGAAGGGAACTGGAAACGATCACGATAGAGAATATTTTGACCAGAACGATAGAGTTCCACTTGTTTTTCCCACACCTTCATTTTTCGTTTGACAGTCTGTGTATATGTGATAGCATTAACAGCTTCACCAGTACTTCCAGCTTCTATGGCCTGTTGTTCTAGATCGAGGGCGGCCTTAGATACTTGTGAGAATAGGTCT] [-] EMBL CD119618 [ TAGCTTGCGCGGTTGGACAGTTTGCCAAGGAGTCTCTTTCATTAACTCGATTTGTTCCCAAACATGGGATAATTCAAGCCAAACATTTTTGAGATCCTGAAGTTCTTCAAAAGCCACTTGTACACGTTGTTCTGTTGGTGACAGTAAACCGGATTCAGTCAATTCTAAAGCTTCTTTAGCACGTTGAATATTATCACG ] [+] EMBL CD179833 [ AAGCCACTTGTACACGTTGTTCTGTTGGTGACAGTAAACCGGATTCAGTCAATTCTAAAGCTTCTTTAGCACGTTGAATATTATCACGTTCTTCACGTAGACGATTGAACTTCCCTTCTAATATAGTTAGTTGA ] consensusID : consensus_9479#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [TAGTGCATCCATAACCAGAGGAGACTTTAGAGCGTTCTTCATTGAGCCAAGGAATTCTGTAGTCACACTCTGGAATCTGTGTGATTCTTGAGGTAATAGAGCTTTGATATCGGCAGAACCTGCGAAAATACCATCAAGGTATACCCAGCGACGTTGTGCATCTATCCAAACATCAAACAAAGCGTTAATCCTGTTTAAACGATCTTCCCAGGCCAAGGCTTCCTCCTCAAATTGTTTAAAATAGGGTGATAACTTCATGGCACTCAAACTGTTTATATGTTCTGTGATGCGGTTAAACAAATCGTCCCAACCGCGAATTAGTCGACATTTATCCTGATAGGGAATAAGTTCAAGTGTATAGTTCTTCCATACTTCAGTGACTTGTTTAAGAAATTCTTGTAAGGCTTTCTCACCCTGAGCAACCAGTAAGATTTCTTTAATTACTGCCTCATCTTGTTAGAGATCTAATTCCCACATATGACCAAGTGTTAATTCATGTCCACAAG] [-] EMBL CD154491 [TAGTGCATCCATAACCAGAGGAGACTTTAGAGCGTTCTTCATTGAGCCAAGGAATTCTGTAGTCACACTCTGGAATCTGTGTGATTCTTGAGGTAATAGAGCTTTGATATCGGCAGAACCTGCGAAAATACCATCAAGGTATACCCAGCGACGTTGTGCATCTATCCAAACATCAAACAAAGCGTTAATCCTGTTTAAACGATCTTCCCAGGCCAAGGCTTCCTCCTCAAATTGTTTAAAATAGGGTGATAACTTCATGGCACTCAAACTGTTTATATGTTCTGTGATGCGGTTAAACAAATCGTCCCAACCGCGAATTAGTCGACATTTATCCTGATAGGGAATAAGTTCAAGTGTATAGTTCTTCCATACTTCAGTGACTTGTTTAAGAAATTCTTGTAAGGCTTTCTCACCCTGAGCAACCAGTAAGATTTCTTTAATTACTGCCTCATCTTGTTAGAGATCTAATTCCCACATATGACCAAGTGTTAATTCATGTCCACAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9479#0 CTGAACATTTGAAGTGTTTAGTACATCCATAACCAGAGGAGACTTTGAAACTTTCTTCAT 60 consensus_9479#1 ------------------TAGTGCATCCATAACCAGAGGAGACTTTAGAGCGTTCTTCAT 42 **** *********************** * * ******** consensus_9479#0 TAAACCAAGGAATTCTGTACTCACACTCTGGAATCTTTGTGATTCTTGAGGTAATAAAAC 120 consensus_9479#1 TGAGCCAAGGAATTCTGTAGTCACACTCTGGAATCTGTGTGATTCTTGAGGTAATAGAGC 102 * * *************** **************** ******************* * * consensus_9479#0 TTTGATATCGGCAGAACCTGCGAAAATACCATCAAGGTATACCCAACGACGTTGTACATC 180 consensus_9479#1 TTTGATATCGGCAGAACCTGCGAAAATACCATCAAGGTATACCCAGCGACGTTGTGCATC 162 ********************************************* ********* **** consensus_9479#0 TATCCAAACATCAAACAAAGCGTTAATCCTGTT-AAACGATCTTCCCAGGCCAAGGCTTC 239 consensus_9479#1 TATCCAAACATCAAACAAAGCGTTAATCCTGTTTAAACGATCTTCCCAGGCCAAGGCTTC 222 ********************************* ************************** consensus_9479#0 CTCCTCAAATTGTTTAAAATAGGGTGATAACTTCATGGCACTCAAACTGTTTATATGTTC 299 consensus_9479#1 CTCCTCAAATTGTTTAAAATAGGGTGATAACTTCATGGCACTCAAACTGTTTATATGTTC 282 ************************************************************ consensus_9479#0 TTTGATGCGGTTAAACAAATCGTCCCAACCGCGAATTAGTCGACATTTATCCTGATAGGG 359 consensus_9479#1 TGTGATGCGGTTAAACAAATCGTCCCAACCGCGAATTAGTCGACATTTATCCTGATAGGG 342 * ********************************************************** consensus_9479#0 AATAAGTTCAAGTGTATAGTTCTTCCATACTTCAGTGACTTGTTTAAGAAATTCTTCTAA 419 consensus_9479#1 AATAAGTTCAAGTGTATAGTTCTTCCATACTTCAGTGACTTGTTTAAGAAATTCTTGTAA 402 ******************************************************** *** consensus_9479#0 GGCTTTCTCACCCTGAGCAACCAGTAAGATTTCTTTAATTACTGCCTCATTTTGTTGGAG 479 consensus_9479#1 GGCTTTCTCACCCTGAGCAACCAGTAAGATTTCTTTAATTACTGCCTCATCTTGTTAGAG 462 ************************************************** ***** *** consensus_9479#0 ATCTAATTCCCACATATGACCAAGTGTTAATTCAGACATAGTCCAATTAACGTTAAGTTT 539 consensus_9479#1 ATCTAATTCCCACATATGACCAAGTGTTAATTCATGTCCA---CAAG------------- 506 ********************************** * *** consensus_9479#0 TTTCATTAAAGACTTCCAATGACGATCTTTTAATGCTTCCGACTTCAATTCCACTATCAT 599 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 AACATTGGACTTGGCATAATTTTGAAGAGTTCGTTTGACGTGTTCATAAGATGAATATTG 659 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 TCTAAGTCGCGCTGGAAGTTCCTTTAATTGTCCTGCAAGTGCGTCTAACTGTTGTCTTAG 719 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 CTTGCGCGGTTGGACAGTTTGCCAAGGAGTCTCTTTCATTAACTCGATTTGTTCCCAAAC 779 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 ATGGGATAATTCAAGCCAAACATTTTTGAGATCCTGAAGTTCTTCAAAAGCCACTTGTAC 839 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 ACGTTGTTCTGTTGGTGACAGTAAACCGGATTCAGTCAATTCTAAAGCTTCTTTAGCACG 899 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 TTGAATATTATCACGTTCTTCACGTAGACGATTGAACTTCCCTTCTAATATAGTTAGTTG 959 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 ATTGACAGCCTCTTCCGGTTTTAGATTACCGGCAATTGGTTTCTCCTTTTCCCAAGATGA 1019 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 TAATAATTCAGAGGTTTTACCCTCAACAATCTTATCTTCAGCTACAACTTTCATTTGAAG 1079 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 ACTGGCCACTTGAGTACCAATACTATTTTCTTTTCGTCGTAAAATCTCTTGGAATGCACT 1139 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 CCATTCACCTAGAATATTTTCTGAATCCAACCAATTTGAAGGGAACTGGAAACGATCACG 1199 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 ATAGAGAATATTTTGACCAGAACGATAGAGTTCCACTTGTTTTTCCCACACCTTCATTTT 1259 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 TCGTTTGACAGTCTGTGTATATGTGATAGCATTAACAGCTTCACCAGTACTTCCAGCTTC 1319 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 TATGGCCTGTTGTTCTAGATCGAGGGCGGCCTTAGATACTTGTGAGAATAGGTCT 1374 consensus_9479#1 ------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||