These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 715 fasta sequence [GGGTTCTAAGGGTACCCGTGTTTTTCTTTTCTGTTGCAGTCTTGATAATTGGCTATTGGGGTTTCACTGAGGAAGCTGATTGCAGTTGTCAAGAACGGTGGGCTTCTTGCCATACTGTTACTGCATTAGATGGGGGATCTTCCGAGTTAATTAGGAGTGCGGTTTCCTGTGACACACTGGCAGAAGTTAGTACGGAATTCAGTAAGCCTTTCGAGGGTTCCACTCAAATACAACAAAGTCA-AACAAAGGTGGAAGGACAACAGCGTCAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTCTGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCTCCGAGCTTTCATGTCTGAGCAGTTGTGTTTATCTTCCGCAAAATCATGGAGTGCAATATTGGAAGGAAAAGGGTTTCTTGTGAGAGGTAATTCCCTTCCTAGATCGGGAAACATCTTTGACGCAGCTTATACAAACGATACTTGCTATTCTGACGATTCATTTGTCAATCACTGTTTTCTTGCATTATTTTGGGCTCATTTTCTCGTCGCTATTTGGCTTTATCAATGGCCATTATATTTGATTTGTTTTATCTTAATTTTCTTTGGGATCCTTCGTCTATCACTTTATTTAAAGTTGCAAGAACTATCACATTGGGTTCTTTGTAAACTGAACAGTCTACTACAGACCAT] [+] EMBL CD116093 [GGGTTCTAAGGGTACCCGTGTTTTTCTTTTCTGTTGCAGTCTTGATAATTGGCTATTGGGGTTTCACTGAGGAAGCTGATTGCAGTTGTCAAGAACGGTGGGCTTCTTGCCATACTGTTACTGCATTAGATGGGGGATCTTCCGAGTTAATTAGGAGTGCGGTTTCCTGTGACACACTGGCAGAAGTTAGTACGGAATTCAGTAAGCCTTTCGAGGGTTCCACTCAAATACAACAAAGTCA AACAAAGGTGGAAGGACAACAGCGTCAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTCTGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCT ] [+] EMBL CD116019 [GGGTTCTAAGGGTACCCGTGTTTTTCTTTTCTGTTGCAGTCTTGATAATTGGCTATTGGGGTTTCACTGAGGAAGCTGATTGCAGTTGTCAAGAACGGTGGGCTTCTTGCCATACTGTTACTGCATTAGATGGGGGATCTTCCGAGTTAATTAGGAGTGCGGTTTCCTGTGACACACTGGCAGAAGTTAGTACGGAATTCAGTAAGCCTTTCGAGGGTTCCACTCAAATACAACAAAGTCACAACCCCTGT CAAGGACAACAGNGNNAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTCTGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCT ] [+] EMBL CD116127 [GGGTTCTAAGGGTACCCGTGTTTTTCTTTTCTGTTGCAGTCTTGATAATTGGCTATTGGGGTTTCACTGAGGAAGCTGATTGCAGTTGTCAAGAACGGTGGGCTTCTTGCCATACTGTTACTGCATTAGATGGGGGATCTTCCGAGTTAATTAGGAGTGCGGTTTCCTGTGACACACTGGCAGAAGTTAGTACGGAATTCAGTAAGCCTTTCGAGGGTTCCACTCAAATACAACAAAGTCA AACAAAGGTGGAAGGACAACAGCGTCAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTCTGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCT ] [+] EMBL CD115974 [GGGTTCTAAGGGTACCCGTGTTTTTCTTTTCTGTTGCAGTCTTGATAATTGGCTATTGGGGTTTCACTGAGGAAGCTGATTGCAGTTGTCAAGAACGGTGGGCTTCTTGCCATACTGTTACTGCATTAGATGGGGGATCTTCCGAGTTAATTAGGAGTGCGGTTTCCTGTGACACACTGGCAGAAGTTAGTACGGAATTCAGTAAGCCTTTCGAGGGTTCCACTCAAATACAACAAAGTCA AACAAAGGTGGAAGGACAACAGCGTCAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTCTGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCT ] [+] EMBL BG931400 [ TTCGAGGGTTCCACTCAAATACAACAAAGTCA AACAAAGGTGGAAGGACAATAGCGTCAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTCTGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCTCCGAGCTTTCATGTCTGAGCAGTTGTGTTTATCTTCCGCAAAATCATGGAGTGCAATATTGGAAGGAAAAGGGTTTCTTGAGAGAGGTAATTCCCTTCCTAGATCGGGAAACATCTTTGACGCAGCTTATACAAACGATACTTGCTATTCTGACGATTCATTTGTCAATCACTGCTTTCTTGCATTATTTTGGGCTCATTTTCTCGTCGCTATTTGGCTTTATCAATGGCCATTATATTTGATTTGTTTTATCTTAATTTTCTTTGGGACCC ] [-] EMBL BG931378 [ TCCACTCAAATACAACAAAGTCA AACAAAGGTGGAAGGACAACAGCGTCAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTCTGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCTCCGAGCTTTCATGTCTGAGCAGTTGTGTTTATCTTCCGCAAAATCATGGAGTGCAATATTGGAAGGAAAAGGGTTTCTTGTGAGAGGTAATTCCCTTCCTAGATCGGGAAACATCTTTGACGCAGCTTATACAAACGATACTTGCTATTCTGACGATTCATTTGTCAATCACTGTTTTCTTGCATTATTTTGGGCTCATTTTCTCGTCGCTATTTGGCTTTATCAATGGCCATTATATTTGATTTGTTTTATCTTGATTTTCTTTGGGAT ] [+] EMBL CD154440 [ AAGGACAACAGCGTCAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTCTGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCTCCGAGCTTTCATGTCTGAGCAGTTGTGTTTATCTTCCGCAAAATCATGGAGTGCAATATTGGAAGGAAAAGGGTTTCTTGTGAGAGGTAATTCCCTTCCTAGATCGGGAAACATCTTTGACGCAGCTTATACAAACGATACTTGCTATTCTGACGATTCATTTGTCAATCACTGTTTTCTTGCATTATTTTGGGCTCATTTTCTCGTCGCTATTTGGCTTTATCAATGGCCATTATATTTGATTTGTTTTATCTTAATTTTCTTTGGGATTTTTCGTCTATCACTTTATTTAAAGTTGCAAGAACTATCACATTGGGTTCTTTGTAAACTGAACAGTCTACTACAGACCAT] consensusID : consensus_9481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 537 fasta sequence [TGTGGTGAACATCGTTTGGTGGGGTTATAAGGGTACCCGTGTTTTTCTTTTCTGCTGCAGTCTTCATAATTGGCTATTGGGGTTTCACTGAGGAAGCTGATTGCAGTTGTCAAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCTCCGAGCTTTCATGTCTGAGCAGTTGTGTTTATCTTCCGCAAAATCATGGAGTGCAATATTGGAAGGAAAAGGGTAAGCGCATGAACAAGTCATAGTTTTATGTATCCCAGATGACTAGATTGAATTTGAGTATTAAGGTAATTCAATAACTCATGACTGCATTTGAGTCAATATTTATGGGCTAAGTTAAGATTTAAGGAATTATTAGATTAAGAAGATCAACATAATATCTCACTGGTTTGGTCTTATTTCATATTCGCTGATAATTTTATTATTTATTTCTATCACGAAAAATTTTCCTGCCAAATTTCAATAGCCTTAACGGACATTTCATTGTATGCATAATGAAACTGTTTAGTGAAA] [-] EMBL CD090935 [TGTGGTGAACATCGTTTGGTGGGGTTATAAGGGTACCCGTGTTTTTCTTTTCTGCTGCAGTCTTCATAATTGGCTATTGGGGTTTCACTGAGGAAGCTGATTGCAGTTGTCAAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCTCCGAGCTTTCATGTCTGAGCAGTTGTGTTTATCTTCCGCAAAATCATGGAGTGCAATATTGGAAGGAAAAGGGTAAGCGCATGAACAAGTCATAGTTTTATGTATCCCAGATGACTAGATTGAATTTGAGTATTAAGGTAATTCAATAACTCATGACTGCATTTGAGTCAATATTTATGGGCTAAGTTAAGATTTAAGGAATTATTAGATTAAGAAGATCAACATAATATCTCACTGGTTTGGTCTTATTTCATATTCGCTGATAATTTTATTATTTATTTCTATCACGAAAAATTTTCCTGCCAAATTTCAATAGCCTTAACGGACATTTCATT ] [-] EMBL CD090145 [ ATAATATCTCACTGGTTTGGTCTTATTTCATATTCGCTGATAATTTTATTATCTATTTCTATCACGAAAAATTTTCCTGCCAAATTTCAATAGCCTTAACGGACATTTCATTGTATGCATAATGAAACTGTTTAGTGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9481#0 GGGTTCTAAGGGTACCCGTGTTTTTCTTTTCTGTTGCAGTCTTGATAATTGGCTATTGGG 60 consensus_9481#1 ------------------------------------------------------------ consensus_9481#0 GTTTCACTGAGGAAGCTGATTGCAGTTGTCAAGAACGGTGGGCTTCTTGCCATACTGTTA 120 consensus_9481#1 ------------------------------------------------------------ consensus_9481#0 CTGCATTAGATGGGGGATCTTCCGAGTTAATTAGGAGTGCGGTTTCCTGTGACACACTGG 180 consensus_9481#1 ------------------------------------------------------------ consensus_9481#0 CAGAAGTTAGTACGGAATTCAGTAAGCCTTTCGAGGGTTCCACTCAAATACAACAAAGTC 240 consensus_9481#1 -TGTGGTGAACATCG--TTTGGTGGGGTTATAAGGGTACCCGTGTTTTTCTTTTCTGCTG 57 * ** * * * ** ** * * * ** ** * * consensus_9481#0 AAACAAAGGTGGAAGGACAACAGCGTCAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTC 300 consensus_9481#1 CAGTCTTCATAATTGGCTATTGGGGTTTCACTGAGG-------AAGCTGATTGCAGTTGT 110 * * ** * * ** **** *** ** * ****** consensus_9481#0 TGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTG 360 consensus_9481#1 CAAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTG 170 ********************************************************** consensus_9481#0 AGCTCCGAGCTTTCATGTCTGAGCAGTTGTGTTTATCTTCCGCAAAATCATGGAGTGCAA 420 consensus_9481#1 AGCTCCGAGCTTTCATGTCTGAGCAGTTGTGTTTATCTTCCGCAAAATCATGGAGTGCAA 230 ************************************************************ consensus_9481#0 TATTGGAAGGAAAAGGGTTT-CTTGTGAG-AGGTAATTCCCTTCC-TAGATCGGGAAACA 477 consensus_9481#1 TATTGGAAGGAAAAGGGTAAGCGCATGAACAAGTCATAGTTTTATGTATCCCAGATGACT 290 ****************** * *** * ** ** ** ** * * ** consensus_9481#0 TCTTTGACGCAGCTTATACAAACGATACTTGCTATTCTGACGATTCATTTGTCAATCACT 537 consensus_9481#1 AGATTGAATTTGAGTATTAAGGTAAT--TCAATAACTCATGACTGCATTTG--AGTCAAT 346 **** * *** * ** * ** * ****** * *** * consensus_9481#0 GTTTTCTTGCATTATTTTGGGCTCATTTTCTCGTCGCTATTTGGCTTTATCAATGGCCAT 597 consensus_9481#1 ATTTATGGGC-------TAAGTTAAGATTTAAGGAATTATTAGATTAAGAAGATCAACAT 399 *** ** * * * * ** * **** * * ** *** consensus_9481#0 TATATTTGATTTGTTTTATCTTAATTTTCTTTGGGATCCTTCGTCTATCACTTTATTTAA 657 consensus_9481#1 AATATCTCACTGGTTTGGTCTTA-TTTCATATTCGCTGATAATTTTATTA-TTTATTTCT 457 **** * * * **** ***** *** * * * * * * *** * ******* consensus_9481#0 AGTTGCAAGAACTATCACATTGGGTTCTTTGTAAACTGAACAGTCTACTACAGACCAT-- 715 consensus_9481#1 ATCACGAAAAATTTTCCTGCCAAATT-TCAATAGCCTTAACGGAC-ATTTCATTGTATGC 515 * ** ** * ** ** * ** ** *** * * * * ** ** consensus_9481#0 ---------------------- consensus_9481#1 ATAATGAAACTGTTTAGTGAAA 537 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||