cluster # 9481

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Schistosoma mansoni
cluster # 9481 cluster # 9481 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9481#0 length = 715 sequences # 7

consensus_9481#1 length = 537 sequences # 2

consensusID : consensus_9481#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 715
fasta sequence

                              [GGGTTCTAAGGGTACCCGTGTTTTTCTTTTCTGTTGCAGTCTTGATAATTGGCTATTGGGGTTTCACTGAGGAAGCTGATTGCAGTTGTCAAGAACGGTGGGCTTCTTGCCATACTGTTACTGCATTAGATGGGGGATCTTCCGAGTTAATTAGGAGTGCGGTTTCCTGTGACACACTGGCAGAAGTTAGTACGGAATTCAGTAAGCCTTTCGAGGGTTCCACTCAAATACAACAAAGTCA-AACAAAGGTGGAAGGACAACAGCGTCAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTCTGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCTCCGAGCTTTCATGTCTGAGCAGTTGTGTTTATCTTCCGCAAAATCATGGAGTGCAATATTGGAAGGAAAAGGGTTTCTTGTGAGAGGTAATTCCCTTCCTAGATCGGGAAACATCTTTGACGCAGCTTATACAAACGATACTTGCTATTCTGACGATTCATTTGTCAATCACTGTTTTCTTGCATTATTTTGGGCTCATTTTCTCGTCGCTATTTGGCTTTATCAATGGCCATTATATTTGATTTGTTTTATCTTAATTTTCTTTGGGATCCTTCGTCTATCACTTTATTTAAAGTTGCAAGAACTATCACATTGGGTTCTTTGTAAACTGAACAGTCTACTACAGACCAT]

[+] EMBL CD116093             [GGGTTCTAAGGGTACCCGTGTTTTTCTTTTCTGTTGCAGTCTTGATAATTGGCTATTGGGGTTTCACTGAGGAAGCTGATTGCAGTTGTCAAGAACGGTGGGCTTCTTGCCATACTGTTACTGCATTAGATGGGGGATCTTCCGAGTTAATTAGGAGTGCGGTTTCCTGTGACACACTGGCAGAAGTTAGTACGGAATTCAGTAAGCCTTTCGAGGGTTCCACTCAAATACAACAAAGTCA AACAAAGGTGGAAGGACAACAGCGTCAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTCTGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCT                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD116019             [GGGTTCTAAGGGTACCCGTGTTTTTCTTTTCTGTTGCAGTCTTGATAATTGGCTATTGGGGTTTCACTGAGGAAGCTGATTGCAGTTGTCAAGAACGGTGGGCTTCTTGCCATACTGTTACTGCATTAGATGGGGGATCTTCCGAGTTAATTAGGAGTGCGGTTTCCTGTGACACACTGGCAGAAGTTAGTACGGAATTCAGTAAGCCTTTCGAGGGTTCCACTCAAATACAACAAAGTCACAACCCCTGT CAAGGACAACAGNGNNAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTCTGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCT                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD116127             [GGGTTCTAAGGGTACCCGTGTTTTTCTTTTCTGTTGCAGTCTTGATAATTGGCTATTGGGGTTTCACTGAGGAAGCTGATTGCAGTTGTCAAGAACGGTGGGCTTCTTGCCATACTGTTACTGCATTAGATGGGGGATCTTCCGAGTTAATTAGGAGTGCGGTTTCCTGTGACACACTGGCAGAAGTTAGTACGGAATTCAGTAAGCCTTTCGAGGGTTCCACTCAAATACAACAAAGTCA AACAAAGGTGGAAGGACAACAGCGTCAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTCTGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCT                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD115974             [GGGTTCTAAGGGTACCCGTGTTTTTCTTTTCTGTTGCAGTCTTGATAATTGGCTATTGGGGTTTCACTGAGGAAGCTGATTGCAGTTGTCAAGAACGGTGGGCTTCTTGCCATACTGTTACTGCATTAGATGGGGGATCTTCCGAGTTAATTAGGAGTGCGGTTTCCTGTGACACACTGGCAGAAGTTAGTACGGAATTCAGTAAGCCTTTCGAGGGTTCCACTCAAATACAACAAAGTCA AACAAAGGTGGAAGGACAACAGCGTCAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTCTGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCT                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BG931400             [                                                                                                                                                                                                                 TTCGAGGGTTCCACTCAAATACAACAAAGTCA AACAAAGGTGGAAGGACAATAGCGTCAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTCTGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCTCCGAGCTTTCATGTCTGAGCAGTTGTGTTTATCTTCCGCAAAATCATGGAGTGCAATATTGGAAGGAAAAGGGTTTCTTGAGAGAGGTAATTCCCTTCCTAGATCGGGAAACATCTTTGACGCAGCTTATACAAACGATACTTGCTATTCTGACGATTCATTTGTCAATCACTGCTTTCTTGCATTATTTTGGGCTCATTTTCTCGTCGCTATTTGGCTTTATCAATGGCCATTATATTTGATTTGTTTTATCTTAATTTTCTTTGGGACCC                                                                               ]
[-] EMBL BG931378             [                                                                                                                                                                                                                          TCCACTCAAATACAACAAAGTCA AACAAAGGTGGAAGGACAACAGCGTCAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTCTGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCTCCGAGCTTTCATGTCTGAGCAGTTGTGTTTATCTTCCGCAAAATCATGGAGTGCAATATTGGAAGGAAAAGGGTTTCTTGTGAGAGGTAATTCCCTTCCTAGATCGGGAAACATCTTTGACGCAGCTTATACAAACGATACTTGCTATTCTGACGATTCATTTGTCAATCACTGTTTTCTTGCATTATTTTGGGCTCATTTTCTCGTCGCTATTTGGCTTTATCAATGGCCATTATATTTGATTTGTTTTATCTTGATTTTCTTTGGGAT                                                                                 ]
[+] EMBL CD154440             [                                                                                                                                                                                                                                                             AAGGACAACAGCGTCAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTCTGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCTCCGAGCTTTCATGTCTGAGCAGTTGTGTTTATCTTCCGCAAAATCATGGAGTGCAATATTGGAAGGAAAAGGGTTTCTTGTGAGAGGTAATTCCCTTCCTAGATCGGGAAACATCTTTGACGCAGCTTATACAAACGATACTTGCTATTCTGACGATTCATTTGTCAATCACTGTTTTCTTGCATTATTTTGGGCTCATTTTCTCGTCGCTATTTGGCTTTATCAATGGCCATTATATTTGATTTGTTTTATCTTAATTTTCTTTGGGATTTTTCGTCTATCACTTTATTTAAAGTTGCAAGAACTATCACATTGGGTTCTTTGTAAACTGAACAGTCTACTACAGACCAT]




>consensus_9481#0
GGGTTCTAAGGGTACCCGTGTTTTTCTTTTCTGTTGCAGTCTTGATAATTGGCTATTGGG
GTTTCACTGAGGAAGCTGATTGCAGTTGTCAAGAACGGTGGGCTTCTTGCCATACTGTTA
CTGCATTAGATGGGGGATCTTCCGAGTTAATTAGGAGTGCGGTTTCCTGTGACACACTGG
CAGAAGTTAGTACGGAATTCAGTAAGCCTTTCGAGGGTTCCACTCAAATACAACAAAGTC
AAACAAAGGTGGAAGGACAACAGCGTCAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTC
TGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTG
AGCTCCGAGCTTTCATGTCTGAGCAGTTGTGTTTATCTTCCGCAAAATCATGGAGTGCAA
TATTGGAAGGAAAAGGGTTTCTTGTGAGAGGTAATTCCCTTCCTAGATCGGGAAACATCT
TTGACGCAGCTTATACAAACGATACTTGCTATTCTGACGATTCATTTGTCAATCACTGTT
TTCTTGCATTATTTTGGGCTCATTTTCTCGTCGCTATTTGGCTTTATCAATGGCCATTAT
ATTTGATTTGTTTTATCTTAATTTTCTTTGGGATCCTTCGTCTATCACTTTATTTAAAGT
TGCAAGAACTATCACATTGGGTTCTTTGTAAACTGAACAGTCTACTACAGACCAT

consensusID : consensus_9481#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 537
fasta sequence

                              [TGTGGTGAACATCGTTTGGTGGGGTTATAAGGGTACCCGTGTTTTTCTTTTCTGCTGCAGTCTTCATAATTGGCTATTGGGGTTTCACTGAGGAAGCTGATTGCAGTTGTCAAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCTCCGAGCTTTCATGTCTGAGCAGTTGTGTTTATCTTCCGCAAAATCATGGAGTGCAATATTGGAAGGAAAAGGGTAAGCGCATGAACAAGTCATAGTTTTATGTATCCCAGATGACTAGATTGAATTTGAGTATTAAGGTAATTCAATAACTCATGACTGCATTTGAGTCAATATTTATGGGCTAAGTTAAGATTTAAGGAATTATTAGATTAAGAAGATCAACATAATATCTCACTGGTTTGGTCTTATTTCATATTCGCTGATAATTTTATTATTTATTTCTATCACGAAAAATTTTCCTGCCAAATTTCAATAGCCTTAACGGACATTTCATTGTATGCATAATGAAACTGTTTAGTGAAA]

[-] EMBL CD090935             [TGTGGTGAACATCGTTTGGTGGGGTTATAAGGGTACCCGTGTTTTTCTTTTCTGCTGCAGTCTTCATAATTGGCTATTGGGGTTTCACTGAGGAAGCTGATTGCAGTTGTCAAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCTCCGAGCTTTCATGTCTGAGCAGTTGTGTTTATCTTCCGCAAAATCATGGAGTGCAATATTGGAAGGAAAAGGGTAAGCGCATGAACAAGTCATAGTTTTATGTATCCCAGATGACTAGATTGAATTTGAGTATTAAGGTAATTCAATAACTCATGACTGCATTTGAGTCAATATTTATGGGCTAAGTTAAGATTTAAGGAATTATTAGATTAAGAAGATCAACATAATATCTCACTGGTTTGGTCTTATTTCATATTCGCTGATAATTTTATTATTTATTTCTATCACGAAAAATTTTCCTGCCAAATTTCAATAGCCTTAACGGACATTTCATT                            ]
[-] EMBL CD090145             [                                                                                                                                                                                                                                                                                                                                                                                                             ATAATATCTCACTGGTTTGGTCTTATTTCATATTCGCTGATAATTTTATTATCTATTTCTATCACGAAAAATTTTCCTGCCAAATTTCAATAGCCTTAACGGACATTTCATTGTATGCATAATGAAACTGTTTAGTGAAA]




>consensus_9481#1
TGTGGTGAACATCGTTTGGTGGGGTTATAAGGGTACCCGTGTTTTTCTTTTCTGCTGCAG
TCTTCATAATTGGCTATTGGGGTTTCACTGAGGAAGCTGATTGCAGTTGTCAAGGCAAGC
TTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTGAGCTCCGAGC
TTTCATGTCTGAGCAGTTGTGTTTATCTTCCGCAAAATCATGGAGTGCAATATTGGAAGG
AAAAGGGTAAGCGCATGAACAAGTCATAGTTTTATGTATCCCAGATGACTAGATTGAATT
TGAGTATTAAGGTAATTCAATAACTCATGACTGCATTTGAGTCAATATTTATGGGCTAAG
TTAAGATTTAAGGAATTATTAGATTAAGAAGATCAACATAATATCTCACTGGTTTGGTCT
TATTTCATATTCGCTGATAATTTTATTATTTATTTCTATCACGAAAAATTTTCCTGCCAA
ATTTCAATAGCCTTAACGGACATTTCATTGTATGCATAATGAAACTGTTTAGTGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9481#0      GGGTTCTAAGGGTACCCGTGTTTTTCTTTTCTGTTGCAGTCTTGATAATTGGCTATTGGG 60
consensus_9481#1      ------------------------------------------------------------
                                                                                  

consensus_9481#0      GTTTCACTGAGGAAGCTGATTGCAGTTGTCAAGAACGGTGGGCTTCTTGCCATACTGTTA 120
consensus_9481#1      ------------------------------------------------------------
                                                                                  

consensus_9481#0      CTGCATTAGATGGGGGATCTTCCGAGTTAATTAGGAGTGCGGTTTCCTGTGACACACTGG 180
consensus_9481#1      ------------------------------------------------------------
                                                                                  

consensus_9481#0      CAGAAGTTAGTACGGAATTCAGTAAGCCTTTCGAGGGTTCCACTCAAATACAACAAAGTC 240
consensus_9481#1      -TGTGGTGAACATCG--TTTGGTGGGGTTATAAGGGTACCCGTGTTTTTCTTTTCTGCTG 57
                        *  ** *  *  *  **  **  *  * *   **   **       *         * 

consensus_9481#0      AAACAAAGGTGGAAGGACAACAGCGTCAAACTGGTCTTCCTCTAAGATGGTCGCAGTTTC 300
consensus_9481#1      CAGTCTTCATAATTGGCTATTGGGGTTTCACTGAGG-------AAGCTGATTGCAGTTGT 110
                       *       *    **  *   * **   ****          *** ** * ******  

consensus_9481#0      TGAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTG 360
consensus_9481#1      CAAGGCAAGCTTTCCTCCCAGTACCGACAGGATCGTCCTACGGGTTTGATCCGGTTAGTG 170
                        **********************************************************

consensus_9481#0      AGCTCCGAGCTTTCATGTCTGAGCAGTTGTGTTTATCTTCCGCAAAATCATGGAGTGCAA 420
consensus_9481#1      AGCTCCGAGCTTTCATGTCTGAGCAGTTGTGTTTATCTTCCGCAAAATCATGGAGTGCAA 230
                      ************************************************************

consensus_9481#0      TATTGGAAGGAAAAGGGTTT-CTTGTGAG-AGGTAATTCCCTTCC-TAGATCGGGAAACA 477
consensus_9481#1      TATTGGAAGGAAAAGGGTAAGCGCATGAACAAGTCATAGTTTTATGTATCCCAGATGACT 290
                      ******************   *   ***  * ** **    **   **   * *   ** 

consensus_9481#0      TCTTTGACGCAGCTTATACAAACGATACTTGCTATTCTGACGATTCATTTGTCAATCACT 537
consensus_9481#1      AGATTGAATTTGAGTATTAAGGTAAT--TCAATAACTCATGACTGCATTTG--AGTCAAT 346
                         ****    *  ***  *    **  *   **         * ******  * *** *

consensus_9481#0      GTTTTCTTGCATTATTTTGGGCTCATTTTCTCGTCGCTATTTGGCTTTATCAATGGCCAT 597
consensus_9481#1      ATTTATGGGC-------TAAGTTAAGATTTAAGGAATTATTAGATTAAGAAGATCAACAT 399
                       ***    **       *  * * *  **   *    **** *  *      **   ***

consensus_9481#0      TATATTTGATTTGTTTTATCTTAATTTTCTTTGGGATCCTTCGTCTATCACTTTATTTAA 657
consensus_9481#1      AATATCTCACTGGTTTGGTCTTA-TTTCATATTCGCTGATAATTTTATTA-TTTATTTCT 457
                       **** * * * ****  ***** ***  * *  * *  *   * *** * *******  

consensus_9481#0      AGTTGCAAGAACTATCACATTGGGTTCTTTGTAAACTGAACAGTCTACTACAGACCAT-- 715
consensus_9481#1      ATCACGAAAAATTTTCCTGCCAAATT-TCAATAGCCTTAACGGAC-ATTTCATTGTATGC 515
                      *     ** ** * **        ** *   **  ** *** * * * * **    **  

consensus_9481#0      ----------------------
consensus_9481#1      ATAATGAAACTGTTTAGTGAAA 537