These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9495#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 926 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCGTTACTTATAACTTTTTATTTTGTAACCATTTTGATATGTTATAGCGATAATACATCGATTTAAGTAGGACTTTATACGGGTACTGTCCCTCATGGGGTATGGTCCATAAACCAAACAGTCTTCGTAAATAAGGGTGCATTATCAGAATATGTATACATAGTTGATGAACTGAAGATGTACACCAATAGATCACAAATGCCTTT-GGAAAAAAGCTGCAACACGCGAAAAGAGTGAAATTTCCAACCCAA-CCAGCAAACCGCACAATATTATAAGGTAAAGGATCTGGTATCACAGAATTAGATTTCGGATTGAAGAACAGAGGCCGTCTTAAACACGCCAGTTCAACATTAGCCACCCCGGCTAACGTACATATGAAGGGAAGCAGGAAACCTGAGCACGGAACGTTGAGAGACGAATCGGCGATCAGATGATTGGAATCGAATTGCGGATACAGTTGGAATCCGCTCAAGTATCTGATGGAGAATGTGAATGTGAGCCACAATGGGATTTGGATTATTCCTGTAACTGACGACTTCAATGGGTGACATCCATTTTCTTCGCATGTTTTAATGAAGAAACGT-----CAGTTGATTTTCAAGCAGTAATTGTTTCTTATTACTTATATTACGATAATACTCAGCATTACTAAGTTTCGCTTGTATCATCTGTCGGTTTTGTTGACATTCAATTGCAATATGTGAAACTTTAGCTTGGTTCCTCTCAGCGTAAATATACAATGGAACAGCGACAACTGTTCGTACTAGGATAGCAGTGGTTGCAATTGTCAGTCCCCACGGCAATCCTAGCTGATCATGAACGCCGAGAAGAAGATTCGTTATCGTTTTTACGTGTAAACGATCAGGATGAAACAGTTCTTCGCTAATATAA] [+] EMBL AI395627 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCGTTACTTATAACTTTTTATTTTGTAACCATTTTGATATGTTATAGCGATAATACATCGATTTAAGTAGGACTTTATACGGGTACTGTCCCTCATGGGGTATGGTCCATAAACCAAACAGTCTTCGTAAATAAGGGTGCATTATCAGAATATGTATACATAGTTGATGAACTGAAGATGTACACCAATAGATCACAAATGCCTTT GGAAAAAAGCTGCAACACGCGAAAAGAGTGAAATTTCCAACCCAA CCAGCAAACCGCACAATATTATAAGGTAAAGGATCTGGTATCACAGAATTAGATTTCGGATTGAAGAACAGAGGGCGTCCTAAACA ] [+] EMBL AI395665 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCGTTACTTATAACTTTTTATTTTGTAACCATTTTGATATGTTATAGCGATAATACATCGATTTAAGTAGGACTTTATACGGGTACTGTCCCTCATGGGGTATGGTCCATAAACCAAACAGTCTTCGTAAATAAGGGTGCATTATCAGAATATGTATACATAGTTGATGAACTGAAGATGTACACCAATAGATCACAAATGCCTTT GGAAAAAAGCTGCAACACGCGAAAAGAGTGAAATTTCCAACCCAA CCAGCAAACCGCACAATATTATAAGGTAAAGGATCTGGTATCACAGAATT ] [+] EMBL AI395516 [ TTTTTTTTTTTTTTTTTTTTAACCGTTACTTATAACTTTTTATTTTGTAACCATTTTGATATGTTATAGCGATAATACATCGATTTAAGTAGGACTTTATACGGGTACTGTCCCTCATGGGGTATGGTCCATAAACCAAACAGTCTTCGTAAATAAGGGTGCATTATCAGAATATGTATACATAGTTGATGAACTGAAGATGTACACCAATAGATCACAAATGCCTTT GGAAAAAAGCTGCAACACGCGAAAAGAGTGAAATTTCCAACCCAA CCAGCAAACCGCACAATATTATAAGGTAAAGGATCTGGTATCACAGAATTAGATTTCGGATTGAAGAACAGAGGCCGTCTTAAACACGCCAGTTCAACATTAGCCACCCCGGCTAACGTACATATGAAGGGAAGCAGGAAACCTGAGCACGGAACGTTGAGAGACGAATCGGg ] [+] EMBL AI395167 [ TTTTTTTTTTTTTTTTAATCGTTACTTATAACTTTTTATTTTGTAACCATTTTGATATGTTATAGCGATAATACATCGATTTAAGTAGGACTTTATACGGGTACTGTCCCTCATGGGGTATGGT CATAAACCAAACAGTCTTCGTAAATAAGGGTGCATTAACAGAATATGTATACATAGTTGATGAACTGAAGATGTACACCAATAGATCACAAATGCCTTT GGAAAAAAGCTGCAACACCCCAAAAGAATGGAATTTTCAACCCAA CCAGCAAACCGCACAATATTATAAGGTAAAGGATCTGGTATCACAAAATTAGATTTCGG ] [+] EMBL AI394803 [ TTTTTTTTTTTTTTTAATCGTTACTTATAACTTTTTATTTTGTAACCATTTTGATATGTTATAGCGATAATACATCGATTTAAGTATGACTTTATACGGGTACTGTCCCTCATGGGGTATGGTCCATAAACCAAACAGTCTTCGTAAATAAGGGTGCATTATCAAAATATGTATACATATTTAATAAACTGAAAATGTACCCCAATATATCAC AATTCCTTTGGGAAAAAACCT ] [+] EMBL CD140432 [ CAACCCAA CCAGCAAACCGCACAATATTATAAGGTAAAGGATCTGGTATCACAGAATTAGATTTCGGATTGAAGAACAGAGGCCGTCTTAAACACGCCAGTTCAACATTAGCCACCCCGGCTAACGTACATATGAAGGGAAGCAGGAAACCTGAGCACGGAACGTTGAGAGACGAATCGGCGATCAGATGATTGGAATCGAATTGCGGATACAGTTGGAATCCGCTCAAGTATCTGATGGAGAATGTGAATGTGAGCCACAATGGGATTTGGATTATTCCTGTAACTGACGACTTCAATGGGTGACATCCATTTTCTTCGCATGTTTTAATGAAGAAACGT CAGTTGATTTTCAAGCAGTAATTGTTTCTTATTACTTATATTACGATAATACTCAGCA ] [+] EMBL CD140407 [ CAACCCAATCCAGCAAACCGCACAATATTATAAGGTAAAGGATCTGGTATCACAGAATTAGATTTCGGATTGAAGAACAGAGGCCGTCTTAAACACGCCAGTTCAACATTAGCCACCCCGGCTAACGTACATATAAAGGGAAGCAGGGAACCTGAGCACGGAACGTTGAGAGACGAATCGGCGATCAGATGATTGGAATCGAATTGCGGATACAGTTGGAATCCGCTCAAGTATCTGATGGAGAATGTGAATGTGAGCCACAATGGGATTTGGATTATTCCTGTAACTGACGACTTCAATGGGTGACATCCATTTTCTTCGCATGTTTTAATGAAGAAACGT CAGTTGATTTTCAAGCAGTAATTGTTTCTTATTACTTATATTACGATAATACTCAGCATTACTAAGTTTCGCTTGTATCATCTGTCGGTTTTGTTGACATTCAATTGCAATATGTGAAACTTTAGCTTG ] [+] EMBL CD136479 [ CATTAGCCACCCCGGCTAACGTACATATGAAGGGAAGCAGGAAACCTGAGCACGGAACGTTGAGAGACGAATCGGCGATCAGATGATTGGAATCGAATTGCGGATACAGTTGGAATCCGCTCAAGTATCTGATGGAGAATGTGAATGTGAGCCACAATGGGATTTGGATTATTCCTGTAACTGACGACTTCAATGGGTGACATCCATTTTCTTCGCATGTTTTAATGAAGAAACGTCTGAACAGTTGATTTTCAAGCAGAAATTGTTTCTTATTACTTATATTACGATAATACTCAGCATTACTAAGTTTCGC ] [+] EMBL CD061696 [ agTGGAATCCGCTCAAGTATCTGATGGAGAATGTGAATGTGAGCCACAATGGGATTTGGATTATTCCTGTAACTGACGACTTCAATGGGTGAGATCCATTTTCTTCGCATGTTTTAATGAAGAAACGTCTGAACAGGTGATTTACAAGCAGTAATTGTTTCTTATTACTTATATTACGATAATACTCAGCATTACTAAGTTTCGCTTGTATCATCTGTCGGTTTTGTTGACATCCAATTGCAATATGTGAAACTTTAGCTTGGTTCCTCTCAGCGTAAATATACAATGGAACAGCGACAACTGTTCGTACTAGGATAGCAGTGGTTGCAATTGTCAGTCCCCACGGCAATCCTAGCTGATCATGAACGCCGAGAAGAAGATTCGTTATCGTTTTTACGTGTAAACGATCAGGATGAAACAGTTCTTCGCTAATATAA] consensusID : consensus_9495#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [CTTAAACACGCCAGTTCAACATTAGCCACCCCGGCTAACGTACATATGAAGGGAAGCAGGAAACCTGAGCACGGAACGTTGAGAGACGAATCGGCGATCAGATGATTGGAATCGAATTGCGGATACAGTTGGAATCCGCTCAAGTATCTGATGGAGAATGTGAATGTGAGCCACAATGGGATTTGGATTATTCCTGTAACTGACGGCTTCAATGGGTGACATCCATTTTCTTCGCATGTTTTAATGAAGAAACATCTGAACTTGAAGTATGTATTTATTCAAAGAACCTTACCAGTTGATTTTCAAGCAGTAATTGTTTCTTATTACTTATATTACGATAATACTCAGCATTACTAAGTTTCGCTTGTATCATCTGTCGGTTTTGTTGACATTCAATTGCATATGTGAAACTT] [+] EMBL CD141209 [CTTAAACACGCCAGTTCAACATTAGCCACCCCGGCTAACGTACATATGAAGGGAAGCAGGAAACCTGAGCACGGAACGTTGAGAGACGAATCGGCGATCAGATGATTGGAATCGAATTGCGGATACAGTTGGAATCCGCTCAAGTATCTGATGGAGAATGTGAATGTGAGCCACAATGGGATTTGGATTATTCCTGTAACTGACGGCTTCAATGGGTGACATCCATTTTCTTCGCATGTTTTAATGAAGAAACATCTGAACTTGAAGTATGTATTTATTCAAAGAACCTTACCAGTTGATTTTCAAGCAGTAATTGTTTCTTATTACTTATATTACGATAATACTCAGCATTACTAAGTTTCGCTTGTATCATCTGTCGGTTTTGTTGACATTCAATTGCATATGTGAAACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9495#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCGTTACTTATAACTTTTTATT 60 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 TTGTAACCATTTTGATATGTTATAGCGATAATACATCGATTTAAGTAGGACTTTATACGG 120 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 GTACTGTCCCTCATGGGGTATGGTCCATAAACCAAACAGTCTTCGTAAATAAGGGTGCAT 180 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 TATCAGAATATGTATACATAGTTGATGAACTGAAGATGTACACCAATAGATCACAAATGC 240 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 CTTTGGAAAAAAGCTGCAACACGCGAAAAGAGTGAAATTTCCAACCCAACCAGCAAACCG 300 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 CACAATATTATAAGGTAAAGGATCTGGTATCACAGAATTAGATTTCGGATTGAAGAACAG 360 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 AGGCCGTCTTAAACACGCCAGTTCAACATTAGCCACCCCGGCTAACGTACATATGAAGGG 420 consensus_9495#1 -------CTTAAACACGCCAGTTCAACATTAGCCACCCCGGCTAACGTACATATGAAGGG 53 ***************************************************** consensus_9495#0 AAGCAGGAAACCTGAGCACGGAACGTTGAGAGACGAATCGGCGATCAGATGATTGGAATC 480 consensus_9495#1 AAGCAGGAAACCTGAGCACGGAACGTTGAGAGACGAATCGGCGATCAGATGATTGGAATC 113 ************************************************************ consensus_9495#0 GAATTGCGGATACAGTTGGAATCCGCTCAAGTATCTGATGGAGAATGTGAATGTGAGCCA 540 consensus_9495#1 GAATTGCGGATACAGTTGGAATCCGCTCAAGTATCTGATGGAGAATGTGAATGTGAGCCA 173 ************************************************************ consensus_9495#0 CAATGGGATTTGGATTATTCCTGTAACTGACGACTTCAATGGGTGACATCCATTTTCTTC 600 consensus_9495#1 CAATGGGATTTGGATTATTCCTGTAACTGACGGCTTCAATGGGTGACATCCATTTTCTTC 233 ******************************** *************************** consensus_9495#0 GCATGTTTTAATGAAGAAACGTC------------------------------------- 623 consensus_9495#1 GCATGTTTTAATGAAGAAACATCTGAACTTGAAGTATGTATTTATTCAAAGAACCTTACC 293 ******************** ** consensus_9495#0 AGTTGATTTTCAAGCAGTAATTGTTTCTTATTACTTATATTACGATAATACTCAGCATTA 683 consensus_9495#1 AGTTGATTTTCAAGCAGTAATTGTTTCTTATTACTTATATTACGATAATACTCAGCATTA 353 ************************************************************ consensus_9495#0 CTAAGTTTCGCTTGTATCATCTGTCGGTTTTGTTGACATTCAATTGCAATATGTGAAACT 743 consensus_9495#1 CTAAGTTTCGCTTGTATCATCTGTCGGTTTTGTTGACATTCAATTGCA-TATGTGAAACT 412 ************************************************ *********** consensus_9495#0 TTAGCTTGGTTCCTCTCAGCGTAAATATACAATGGAACAGCGACAACTGTTCGTACTAGG 803 consensus_9495#1 T----------------------------------------------------------- 413 * consensus_9495#0 ATAGCAGTGGTTGCAATTGTCAGTCCCCACGGCAATCCTAGCTGATCATGAACGCCGAGA 863 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 AGAAGATTCGTTATCGTTTTTACGTGTAAACGATCAGGATGAAACAGTTCTTCGCTAATA 923 consensus_9495#1 ------------------------------------------------------------ consensus_9495#0 TAA 926 consensus_9495#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||