These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1040 fasta sequence [CCTAACATCCGGATTTCCCGTGCTCCCGTAGGAACAAATACATCTTCAGGACGCGTTTTCTTAACAAATACGTTCGGAGGTGTGACTCATCGACAAGTTCACGTCTGTATCCCAGCAAATCAAGGGATGTCTAATGTTCAATGTGAAAATGGCTCTGCTGCAGCTCTCCCTCCGAACTATGGCTCATGTGGACGATCTGTGAGAAGCTCTAAAAGAAAACAAGATCTGCTAACACTCACTGGTGGATCATCCTCCGCAAATGCAGGCATTGAGGGCTTTTCAAGCTCACCTCCGGTGTTGGATGACTATGATGACTTGTCAAACATGCGACCATCTTATGCCACTGATTTAAAGAGCTGCTTCATGGAGGGTTCATTGAACGTATGCCAAACACAAGGAAGTCATCCAATCCCTGTGTCCGATAAAGTGCAAATTCGTCATAGCAGCATTGTACATCGTTTAATTACAGATTGCCCAAATAATAAGGTACAAAATGCATCTACTCAGGTAAATGAAGTGTGCCATACCTCCCCTCCTTGTTCAGCACCTGACTCTGTACTATCTCCTCCATCAGATATCTATGAAGAAGCCCAGGCTCTACATCTTTCAAGCCGTGTTTGCAAAAAACTCAGTTTAATGTTTCCTCTGTTTACTGGCATAGGAGCAGACTGTGGCGACATAGATGGTATTTTTAACGAAGAAATTCCTTCTAATCTCGAGCGTTTGTTCCGTTATCAGGTTGTTAGTTTCGACTTCAACCGCAGGGGCCTAATAGCAAATGAAGACATTTGTCCTCGTACGCCGATTATTGAGTACCGTGGTAATTGTTTGTTACTCAGTGAATACAACGATATGTACGACTA-CCGCAAACATTACAATCCGTTTGTACTGTTTTACAAATCCTTCCCGAAGTTACCTCTCTGTGTTGATGCTCGCAAGTATGGCAATGAAGCACGCTTTATCCGTCGGTCATGTACACCTAACTCTGAGGTCCGCCATTGCATTTCCTTTTCAGATGATCAACATAATGGACCCGTTCC] [+] EMBL CD161458 [CCTAACATCCGGATTTCCCGTGCTCCCGTAGGAACAAATACATCTTCAGGACGCGTTTTCTTAACAAATACGTTCGGAGGTGTGACTCATCGACAAGTTCACGTCTGTATCCCAGCAAATCAAGGGATGTCTAATGTTCAATGTGAAAATGGCTCTGCTGCAGCTCTCCCTCCGAACTATGGCTCATGTGGACGATCTGTGAGAAGCTCTAAAAGAAAACAAGATCTGCTAACACTCACTGGTGGATCATCCTCCGCAAATGCAGGCATTGAGGGCTTTTCAAGCTCACCTCCGGTGTTGGATGACTATGATGACTTGTCAAACATGCGACCATCTTATGCCACTGATTTAAAGAGCTGCTTCATGGAGGGTTCATTGAACGTATGCCAAACACAAGGAAGTCATCCAATCCCTGTGTCCGATAAAGTGCAAATTCGTCATAGCAGCATTGTACATCGTTTAATTACAGATTGCCCAAATAATAAGGTACAAAATGCATCTACTCAGGTAAATGAAGTGTGCCATACCTCCCCTCCTTGTTCAGCACCTGACTCTGT ] [+] EMBL CD116868 [ TGGATCATCCTCCGCAAATGCAGGCATTGAGGGCTTTTCAAGCTCACCTCCGGTGTTGGATGACTATGATGACTTGTCAAACATGCGACCATCTTATGCCACTGATTTAAAGAGCTGCTTCATGGAGGGTTCATTGAACGTATGCCAAACACAAGGAAGTCATCCAATCCCTGTGTCCGATAAAGTGCAAATTCGTCATAGCAGCATTGTACATCGTTTAATTACAGATTGCCCAAATAATAAGGTACAAAATGCATCTACTCAGGTAAATGAAGTGTGCCATACCTCCCCTCCTTGTTCAGCACCTGACTCTGTACTATCTCCTCCATCAGATATCTATGAAGAAGCCCAGGCTCTACATCTTTCAAGCCGTGTTTGCAAAAAACTCAGTTTAATGTCTCCTCTGTTTACTGGCATAGGAGCAGACTGTGGCGACATAGATGGTATTTTTAACGAAGAAATTCCTTCTAATCTCGAGCGTTTGTTCCGTTATCAGGTTGTTAGTTTCGACTTCAACCGCAGGGGCCTAATAGCAAATGAAGACATTTGTCCTCGTACGCCGATTATTGAGTACCGTGGTAATTGTTTGTTACTCAGTGAATACAACGATATGTACGACTANCCGCA ] [-] EMBL CD094789 [ CATNGAGGGC TTTCAAGCTCACCTCCGGTGTTGGATGACTATGATGACTTGTCAAACATGCGACCATCTTATGCCACTGATTTAAAGAGCTGCTTCATGGAGGGTTCATTGAACGTATGCCAAACACAAGGAAGTCATCCAATCCCTGTGTCCGATAAAATGCAAATTCGTCATAGCAGCATTGTACATCGTTTAATTACAGATTGCCCAAATAATAAGGTACAAAATGCATCTACTCAGGTAAATGAAGTGTGCCATACCTCCCCTCCTTGTTCAGCACCTGACTCTGTACTATCTCCTCCATCAGATATCTATGAAGAAGCCCAGGCTCTACATCTTTCAAGCCGTGTTTGCAAAAAACTCAGTTTAATGTTTCCTCTGTTTACTGGCATAGGAGCAGACTGTGGCGACATAGATGGTATTTTTAACGAAGAAATTCCTTCTAATCTCGAGCGTTTGTTCCGTTATCAGGTTGTTAGTTTC ] [+] EMBL CD132280 [ CATTGTACATCGTTTAATTACAGATTGCCCAAATAATAAGGTACAAAATGCATCTACTCAGGTAAATGAAGTGTGCCATACCTCCCCTCCTTGTTCAGCACCTGACTCTGTACTATCTCCTCCATCAGATATCTATGAAGAAGCCCAGGCTCTACATCTTTCAAGCCGTGTTTGCAAAAAACTCAGTTTAATGTTTCCTCTGTTTACTGGCATAGGAGCAGACTGTGGCGACATAGATGGTATTTTTAACGAAGAAATTCCTTCTAATCTCGAGCGTTTGTTCCGTTATCAGGTTGT ] [+] EMBL CD068268 [ GGTA TTTAACGAAGAAATTCCTTCTAATCTCGAGCGTCTGTTCCGTTATCAGGTTGTTAGTTTCGACTTCAACCGCA GGGCCTAATAGCAAATGAAGACATTTGTCCTCGTACGCCGATTATTGAGTACCGTGGTAATTGTTTGTTACTCAGTGAATACAATGATATGTACGACTA CCGCAAACATTACAATCCGTTTGTACTGTTTTACAAATCCTTCCCGAAGTTACCTCTCTGTGTTGATGCTCGCAAGTATGGCAATGAAGCACGCTTTATCCGTCGGTCATGTACACCTAACTCTGAGGTCCGCCATTGCATTTCCTTTTCAGATGATCAACATAATGGACCCGTTCC] [+] EMBL CD114426 [ AAGAAATTCCTTCTAATCTCGAGCGTTTGTTCCGTTATCAGGTTGTTAGTTTCGACTTCAACCGCAGGGGCCTAATAGCAAATGAAGACATTTGTCCTCGTACGCCTTTTATTGAGTACCGTGGTAATTGTTTGTTACTCAGTGAATACAACGATATGTACGACTA CCGCAAACATTACAATCCGTTTGTACTGTCTTACAAATCCTTCCCGAAGTTACCTCTCTGTGTTGATGCTCGCAAGTATGGCAATGAAGCACGCTTTATCCGTCCGGCATGTACACC ] consensusID : consensus_9507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 637 fasta sequence [CCCAGTAACGGACAATCCCTGGTCACAACGACTAGTCACGTTTCT-CCTTGCCTAGTCGAACAATCCTAATCTCAACTGCCGGTGGTAATGCAAATCCTCCC-TGCA-AATTCATCGAGTTAGTTCATCCCTCACCCCACATGTTATCTTGCGGACTGGTTTGCCTGGTCTTCAAATTTCTACTACTGCTCCACGTCAAGTTTCTACAGATAGTATGGATTCTGTTCGTTGCGTNTGCGGAAATACGAATTTGGATGGTTATCTCGTTCAGTGTAATCAGTGCAGAATTTGGCACCACAGTGAATGTATTTCATCTGCTAGTAAAAGTCACCTGTCAACACCATATGTTTGTGAAATATGCCAGACACAGTCAAAAGCTATCGCTACTCAACGGCCTCATTTGACTGCGTTTAATAGCGTTGGATCAACTACAACTCCTAACATCCGGATTTCCCGTGCTCCCATAGGAACAAATACATCTTCAGGACGCGTTTTCTTAACAAATACGTTCGGAGGTGTGACTCATCGACAAGTTCACGTCTGTATCCCAGCAAATCAAGGGATGTCTAATGTCCAATGTGGTGAGTTCAATCTAGTTTCTAGTGTGATTTCAGAAAATGGCGCTGCTGCGGGGCGCTGG] [+] EMBL CD129547 [CCCAGTAACGGACAATCCCTGGTCACAACGACTAGTCACGTTTCT CCTTGCCTAGTCGAACAATCCTAATCTCAACTGCCGGTGGTAATGCAAATCCTCCCTTGCA AATTCATCGAGTTAGTTCATCCCTCACCCCACATGTTATCTTGCGGACTGGT ] [-] EMBL CD183708 [ aACTAGTCACGTTTCTCCCNTGCCTAGTCGAACAATCCTAATCTCAACTGCCGGTGGTAATGTAAATCCTCCC TGCANNATTCATCGAGTTAGTTCATCCCTCACCCCACATGTTATCTTGCGGACTGGTTTGCCTGGTCTTCAAATTTCTACTACTGCTCCACGTCAAGTTTCTACAGATAGTATGGATTCTGTTCGTTGCGTNTGCGGAAATACGAATTTGGATGGTTATCTCGTTCAGTGTAATCAGTGCAGAATTTGGCACCACAGTGAATGTATTTCATCTGCTAGTAAAAGTCACCTGTCAACACCATATGTTTGTGAAATATGCCAGACACAGTCAAAAGCTATCGCTACTCAACGGCCTCATTTGACTGCGTTTAATAGCGTTGGATCAACTACAACTCCTAACATCCGGATTTCCCGTGCTCCCATAGGAACAAATACATCTTCAGGACGCGTTTTCTTAACAAATACGTTCGGAGGTGTGACTCATCGACAAGTTCACGTCTGTATCCCAGCAAATCAAGGGATGTCTAATGTCCAATGTGGTGAGTTCAATCTAGTTTCTAGTGTGATTTCAGAAAATGGCGCTGCTGCGGGGCGCTGG] [-] EMBL CD167868 [ TACGAATTTGGATGGTTATCTCGTTCAGTGTAATCAGTGCAGAATTTGGCACCACAGTGAATGTATTTCATCTGCTAGTAAAAGTCACCTGTCAACACCATATGTTTGTGAAATATGCCAGACACAGTCAAAAGCTATCGCTACTCAACGGCCTCATTTGACTGCGTTTAATAGCGTTGGATCAACTACAA ] consensusID : consensus_9507#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence [AGATTTAAATTAATNTATATCTTTCTTTCTACGTACTAATTCTTTCTCCCTGCATCATATCCTTTTATGAAATCTTCTTTTACTACTAGTGAAGTAATTGCTCCTATGAATTCGGTGTGCTAATGAGGTATGGCAATTTTGATTGGTGCATATATGTGCCTGGTCATACGCTATAGCTGACTGCCTGAATGCTTGCTCACTACTCACCATAGACTATAATCCAGTTTTATGTGGAGGTTGGATCTTGCAGTGTTATTTAGTTGGATGGTGACAACCTGTGTCGGAGTCTTCGTTCATGCATCAGCCCCAGATATTACATCTCTTCCCAGCTTCATTATTTTTCAAATTTGTCAATGAAGTGGATGACATAGCACCGTAATATGTATCTTTAATTTTGTATGAATTTACTGTTTTCAGTGCTTATTATCGAAACTTGTTTTCTCTATCATGTGTTTTTTGAATATTCTTATAGTCACTGGTGGATCATCCTCCGCAAATGCAGGCATTGAGGGCTCTTCAAGCTCACCTCCGGTGTTGGATGACTATGATGACTTGTCAAACATGCGACCATCTTATGCCACTGATATAAAGA] [-] EMBL CD161581 [AGATTTAAATTAATNTATATCTTTCTTTCTACGTACTAATTCTTTCTCCCTGCATCATATCCTTTTATGAAATCTTCTTTTACTACTAGTGAAGTAATTGCTCCTATGAATTCGGTGTGCTAATGAGGTATGGCAATTTTGATTGGTGCATATATGTGCCTGGTCATACGCTATAGCTGACTGCCTGAATGCTTGCTCACTACTCACCATAGACTATAATCCAGTTTTATGTGGAGGTTGGATCTTGCAGTGTTATTTAGTTGGATGGTGACAACCTGTGTCGGAGTCTTCGTTCATGCATCAGCCCCAGATATTACATCTCTTCCCAGCTTCATTATTTTTCAAATTTGTCAATGAAGTGGATGACATAGCACCGTAATATGTATCTTTAATTTTGTATGAATTTACTGTTTTCAGTGCTTATTATCGAAACTTGTTTTCTCTATCATGTGTTTTTTGAATATTCTTATAGTCACTGGTGGATCATCCTCCGCAAATGCAGGCATTGAGGGCTCTTCAAGCTCACCTCCGGTGTTGGATGACTATGATGACTTGTCAAACATGCGACCATCTTATGCCACTGATATAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9507#0 CCTAACATCCGGATTTCCCGTGCTCCCGTAGGAACAAATACATCTTCAGGACGCGTTTTC 60 consensus_9507#1 ------------------------------------------------------------ consensus_9507#2 ------------------------------------------------------------ consensus_9507#0 TTAACAAATACGTTCGGAGGTGTGACTCATCGACAAGTTCACGTCTGTATCCCAGCAAAT 120 consensus_9507#1 ------------------------------------------------------------ consensus_9507#2 ------------------------------------------------------------ consensus_9507#0 CAAGGGATGTCTAATGTTCAATGTGAAAATGGCTCTGCTGCAGCTCTCCCTCCGAACTAT 180 consensus_9507#1 ------------------------------------------------------------ consensus_9507#2 ------------------------------------------------------------ consensus_9507#0 GGCTCATGTGGACGATCTGTGAGAAGCTCTAAAAGAAAACAAGATCTGCTAACACTCACT 240 consensus_9507#1 ------------------------------------------------------------ consensus_9507#2 ------------------------------------------------------------ consensus_9507#0 GGTGGATCATCCTCCGCAAATGCAGGCATTGAGGGCTTTTCAAGCTCACCTCCGGTGTTG 300 consensus_9507#1 ------------------------------------------------------------ consensus_9507#2 ------------------------------------------------------------ consensus_9507#0 GATGACTATGATGACTTGTCAAACATGCGACCATCTTATGCCACTGATTTAAAGAGCTGC 360 consensus_9507#1 ------------------------------------------------------------ consensus_9507#2 ------------------------------------------------------------ consensus_9507#0 TTCATGGAGGGTTCATTGAACGTATGCCAAACACAAGGAAGTCATCCAATCCCTGTGTCC 420 consensus_9507#1 --------------------------CCCAGTAACGGACAATC-CCTGGTCACAACGACT 33 consensus_9507#2 --------------------------------AGATTTAAATTAATNTATATCTTTCTTT 28 * * * * * consensus_9507#0 GATAAAGTGCAAATTCGTCATAGCAGCATTGTACATCGTT-TAATTACAGATTGCCCAAA 479 consensus_9507#1 AGTCACGTTTCTCCTTGCC-TAGTCGAACAATCCTAATCT-CAACTGCCGGTGGTAATGC 91 consensus_9507#2 --CTACGTACTAATTCTTTCTCCCTGCATCATATCCTTTTATGAAATCTTCTTTTACTAC 86 * ** * * * * * * * * * consensus_9507#0 TAATAAGGTACA-AAATGCATCTACTCAGGTAA------ATGAAGTGTGCCATACCTCC- 531 consensus_9507#1 AAATCCTCCCTGCAAATTCATCGAGTTAGTTCATCCCTCACCCCACATGTTATCTTGCGG 151 consensus_9507#2 TAGTGAAGTAATTGCTCCTATGAATTCGGTGTG---CTAATGAGGTATGGCA-------- 135 * * ** * * * * ** * consensus_9507#0 -CCTCCTTGTTCAGCACCTGACTCTGTACTATCTCCTC-CATCAGATATCTATGAAGAAG 589 consensus_9507#1 ACTGGTTTGCCTGGTCTTCAAATTTCTACTACTGCTCCACGTCAAGTTTCTACAGATA-G 210 consensus_9507#2 ---ATTTTGATTGGTGCATATATGTGC-CTGGTCATACGCTATAGCTGACTGCCTGAATG 191 *** * * * ** * * * * ** * * consensus_9507#0 CCCAGGCTCTACATCTTTCAAGCCGTGTTTGCAAAAAACTCAGTTTA-ATGTTTCCTCTG 648 consensus_9507#1 TATGGATTCTG-----TTC--GTTGCGTNTGCGGAAATACGAATTTGGATGGTTATCTCG 263 consensus_9507#2 CTTGCTCACTA-----CTCACCATAGACTATAATCCAGTTTTATGTGGAGGTTGGATCT- 245 ** ** * * * * * * consensus_9507#0 TTTACTGGCATAGGAGCAGACTGTGGCGACATAGATGGTATTTTTAACGAAGAAATTCCT 708 consensus_9507#1 TTCAGTGTAATCAGTGCAGAATTTGGCACCACAGTGAATGTATTTCAT----------CT 313 consensus_9507#2 TGCAGTGTTATTTAGTTGGATGGTGACAACCTGTGTCGGAGTCTTCGTTCA------TGC 299 * * ** ** ** ** * * ** consensus_9507#0 TCTAATCTCGAGCGTTTGTTC-CGTTATCAGGTTGTTAGTTTCGACTTCAACCGCAGGGG 767 consensus_9507#1 GCTAGTAAAAGTCACCTGTCAACACCATATGTTTGTGAAATATG---CCAGACACAG--- 367 consensus_9507#2 ATCAGCCCCAGATATTACATCTCTTCCCAGCTTCATTATTTT-----TCAAATTTG---- 350 * * * * * * ** consensus_9507#0 CCTAATAGCAAATGAAGACATTTGTCCTCGTACGCCGATTATTGAGTACCGTGGTAATTG 827 consensus_9507#1 -TCAAAAGCTATCGCTACTCAACGGCCTCATTTGACTGC-GTTTAATAGCGTTG-GATCA 424 consensus_9507#2 -TCAATGA-AGTGGATGACA--TAGCACCGTAATATGTATCTTTAATTTTGTATGAATTT 406 ** * * * * ** * * ** ** consensus_9507#0 TTTGTTACTCAGTGAATACA-ACGATATGTACGACTACCGCAAACATTACAA--TCCGTT 884 consensus_9507#1 ACTACAACTCCTAACATCCGGATTTCCCGTGCTCCCATAGGAACAAATACATCTTCAGGA 484 consensus_9507#2 ACTGTT-TTCAGTGCTTATTATCGAAACTTGTTTTCTC------TATCATGTGTTT--TT 457 * ** * * * * * consensus_9507#0 TGTACTGTTTTA-CAAATCCTTCCCGAAGT-TACCTCTCTGTGTTGATGCTCGCAAGTAT 942 consensus_9507#1 CGCGTTTTCTTAACAAATACGTTCGGAGGTGTGACTCATCG-ACAAGTTCACGTCTGTAT 543 consensus_9507#2 TGAATATTCTTA-----TAGTCACTGGTGGATCATCCTCCG--CAAATGCAGGCATTGAG 510 * * *** * * * * * * * * * * * consensus_9507#0 GGCAATG-AAGCACGCTTTATCCGTCGGTCATGTACACCTAACTCTGAGGTCCGCCATTG 1001 consensus_9507#1 CCCAGCA-AATCAAGGGATGTCTAATGTCCA-ATGTGGTGAGTTC---AATCTAGT-TTC 597 consensus_9507#2 GGCTCTTCAAGCTCACCTCCGGTGTTGGATGACTATGATGACTT-----GTCAAACATGC 565 * ** * * * * * ** * consensus_9507#0 CATTTCCTTTTCAGATGATCAACATAATG-GACCCGTTCC 1040 consensus_9507#1 TAGTGTGATTTCAGAAAATGGCGCTGCTGCGGGGCGCTGG 637 consensus_9507#2 GA---CCATCTTATGCCACTGATATAAAGA---------- 592 * * * * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||