These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 766 fasta sequence [AGAGTAAGCTTCTCATAATAAACTTAGTCTGCTTCGGGATAATGTCTAATAAAGGCAAATCGCAAGATGAAGCTCTTAATAACGAAAATTCAAAGTCAATAAATTCATTCTATCATGAAGAGAATTCTGTGAAATTGGATGGAAGTGCTCACGATCTTTTACAATTCCGAGATTGTTGTGAATCCTTACGCGAGTTCATAAAAAATACATGGCAGCGTAAAAAATCACAGGAGAAGATTAATGCTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGTGGATCAGTTGCACTTAGGTTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCAAACATGTTTAGAATTTAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGCTTGAACAACGAAAGGCTTTGTCTGACTCTTGTGATAAGCTGAAAAGTGCTGTTGAATCTACTTCACAAACCATTAAAAAGAAACGAAATTATTTGGCTAGTTTTGGCCCAAAGTTGAAGGATGTTGCTGAAAGTACTTTGATTGTCCAGGAACTAATGGACTTACCATTTACAAGCGAGAATGAACAGTATAATTTGGCCTTTCTCCTACCTTCACC] [+] EMBL AI976683 [AGAGTAAGCTTCTCATAATAAACTTAGTCTGCTTCGGGATAATGTCTAATAAAGGCAAATCGCAAGATGAAGCTCTTAATAACGAAAATTCAAAGTCAATAAATTCATTCTATCATGAAGAGAATTCTGTGAAATTGGATGGAAGTGCTCACGATCTTTTACAATTCCGAGATTGTTGTGAATCCTTACGCGAGTTCATAAAAAATACATGGCAGCGTAAAAAATCACAGGAGAAGATTAATGCTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGTGGATCAGTTGCACTTAGGTTTGCAGAATCTTTTATAT ] [+] EMBL CD197005 [ GCTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGTGGATCAGTTGCTCTTAGGTTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGGAATTCAAATATGTTTAGAATTTAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGCTTGAACAACGAAAGG ] [+] EMBL CD164013 [ TTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCAAACATGTTTAGAATTTAGGTCTCGAGGTGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGCTTGAACAACGAAAGGCTTTGTCTGACTCTTGTGATAAGCTGAAAAGTGCTGTTGAATCTACTTCACAAACCATTAAAAAGAAACGAAATTATTTGGCTAGTTTTGGCCCAAAGTTGAAGGATGTTGCTGAAAGTACTTTGATTGTCCAGGAACTAATGGACTTACCATTTACAAGCGAGAATGAACAGTATAATTTGGCCTTTCTCCTACCTTCACC] [+] EMBL CD163989 [ TTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCAAACATGTTTAGAATTTAGGTCTCGACAGGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGCTTGAACAACGAAAGGCTTTGTCTGACTCTTGTGATAAGCTGAAAAGTGCTGTTGAATCTACTTCACAAACCATTAAAAAGAAACGAAATTATTTGGCTAGTTTTGGCCCAAAGTTGAAGGATGTCGCTGAAAGTACTTTGATTGTCCAGGAACTAATGGACTTACCATTTACAAGCG ] consensusID : consensus_9518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 614 fasta sequence [CACACGAGACGGCGTCAAGTTTGTGTGCAGCGTTACGGCGTCACAGAGATAATGTCTAATAAAGGCAAATCGCAAGATGAAGCTCTTAATAACGAAAATTCAAAGTCAAT-AAATTCATTCTATCATGAAGAGAATTCTGTGAAATTGGATGGAAGTGCCCACGATCTTTTACAATTCCGAGATTGTTGTGAATCCTTACGCGAGTTCATAAAAAATACATGGCAGCGTAAAAAATCACAGGAGAAGATTAATGCTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGTGGATCAGTTGCACTT-AGG--TTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCAAACATGTTTAGGATTTAGGTGAGTTGTATTTTAGTGTTTGCTTATTTACCACAATAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGTTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGCTTGAACAACGAAAGGC] [+] EMBL CD164533 [CACACGAGACGGCGTCAAGTTTGTGTGCAGCGTTACGGCGTCACAGAGATAATGTCTAATAAAGGCAAATCGCAAGATGAAGCTCTTAATAACGAAAATTCAAAGTCAAT AAATTCATTCTATCATGAAGAGAATTCTGTGAAATTGGATGGAAGTGCCCACGATCTTTTACAATTCCGAGATTGTTGTGAATCCTTACGCGAGTTCATAAAAAATACATGGCAGCGTAAAAAATCACAGGAGAAGATTAATGCTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGTGGATCAGTTGCACTTNAGG TTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCANACATGTT ] [+] EMBL CD164537 [ TTTGTGTGCAGCGTTACGGCGTCACAGAGATAATGTCTAATAAAGGCAAATCGCAAGATGAAGCTCTTAATAACGAAAATTCAAAGTCAATAAAATTCATTCTATCATGAAGAGAATTCTGTGAAATTGGATGGAAGTGCTCACGATCTTTTACAATTCCGAGATTGTTGTGAATCCTTACGCGAGTTCATAAAAAATACATGGCAGCGTAAAAAATCACAGGAGAAGATTAATGCTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGTGGATCAGTTGCACTT AGGGTTTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCAAACATGTT ] [+] EMBL CD197201 [ GCTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGTGGATCAGTTGCACTT AGG TTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCAAACATGTTTAGGATTTAGGTGAGTTGTATTTTAGTGTTTGCTTATTTACCACAATAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGTTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGCTTGAACAACGAAAGG ] [-] EMBL CD197116 [ CTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAGGTGGATCAGTTGCACTT AGG TTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCAAACATGTTTAGGATTTAGGTGAGTTGTATTTTAGTGTTTGCTTATTTACCACAATAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGTTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGCTTGAACAACGAAAGGC] consensusID : consensus_9518#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [GCTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGTGGATCAGTTGCACTTAGGTTTGCAGAATCTTTTATATGAAGTCGCCCACCTTGAAAATGAAATTCAAACATGTTTAGAATTTAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGCTTGAACAACGAAAGGCGTAATTTTCTTTTTATTAAATAGTTTAGTGTATTCCA] [+] EMBL CD197217 [GCTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGTGGATCAGTTGCACTTAGGTTTGCAGAATCTTTTATATGAAGTCGCCCACCTTGAAAATGAAATTCAAACATGTTTAGAATTTAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGCTTGAACAACGAAAGGCGTAATTTTCTTTTTATTAAATAGTTTAGTGTATTCCA] consensusID : consensus_9518#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 325 fasta sequence [ATGTGCTTCAACATCTCTGCCTCCGATATATGTCTATCAACGTATTATCAGATCAAATCATTATTGATTCTAGTCATTTCAGAATTAACTGCAGATAATACGAATTATGTGTGATCAGTTGCCCTCAGGTTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCAAACATGTATAGAATTTAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCCTTGGGAGCTTGAACAACGAAAG] [+] EMBL CD196944 [ATGTGCTTCAACATCTCTGCCTCCGATATATGTCTATCAACGTATTATCAGATCAAATCATTATTGATTCTAGTCATTTCAGAATTAACTGCAGATAATACGAATTATGTGTGATCAGTTGCCCTCAGGTTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCAAACATGTATAGAATTTAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCCTTGGGAGCTTGAACAACGAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9518#0 ----------AGAGTAAGCTTCTCATAATAAACTTAGTCTGCTTCGGGATAATGTCTAAT 50 consensus_9518#2 ------------------------------------------------------------ consensus_9518#1 CACACGAGACGGCGTCAAGTTTGTGTGCAGCGTTACGGCGTCACAGAGATAATGTCTAAT 60 consensus_9518#3 ------------------------------------------------------------ consensus_9518#0 AAAGGCAAATCGCAAGATGAAGCTCTTAATAACGAAAATTCAAAGTCAATAAATTCATTC 110 consensus_9518#2 ------------------------------------------------------------ consensus_9518#1 AAAGGCAAATCGCAAGATGAAGCTCTTAATAACGAAAATTCAAAGTCAATAAATTCATTC 120 consensus_9518#3 ------------------------------------------------------------ consensus_9518#0 TATCATGAAGAGAATTCTGTGAAATTGGATGGAAGTGCTCACGATCTTTTACAATTCCGA 170 consensus_9518#2 ------------------------------------------------------------ consensus_9518#1 TATCATGAAGAGAATTCTGTGAAATTGGATGGAAGTGCCCACGATCTTTTACAATTCCGA 180 consensus_9518#3 ------------------------------------------------------------ consensus_9518#0 GATTGTTGTGAATCCTTACGCGAGTTCATAAAAAATACATGGCAGCGTAAAAAATCACAG 230 consensus_9518#2 ------------------------------------------------------------ consensus_9518#1 GATTGTTGTGAATCCTTACGCGAGTTCATAAAAAATACATGGCAGCGTAAAAAATCACAG 240 consensus_9518#3 ------------------------------------------------------------ consensus_9518#0 GAGAAGATTAATGCTTCGCAGTTTGCCTCACTGATG-ATATCTATCAAGGAGTTGAACAG 289 consensus_9518#2 ------------GCTTCGCAGTTTGCCTCACTGATG-ATATCTATCAAGGAGTTGAACAG 47 consensus_9518#1 GAGAAGATTAATGCTTCGCAGTTTGCCTCACTGATG-ATATCTATCAAGGAGTTGAACAG 299 consensus_9518#3 --------ATGTGCTTCAACATCTCTGCCTCCGATATATGTCTATCAACGTATT-ATCAG 51 ***** * * * * *** ** ******** * ** * *** consensus_9518#0 AAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGT 349 consensus_9518#2 AAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGT 107 consensus_9518#1 AAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGT 359 consensus_9518#3 ATCAAATCATTATTGATTCTAGTCATTTC-AGAATTAACTGCAGATAATACGAATTATGT 110 * ** *** * * * * ** ** **** ********** **** **** * ** consensus_9518#0 G-GATCAGTTGCACTTAGGTTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATG 408 consensus_9518#2 G-GATCAGTTGCACTTAGGTTTGCAGAATCTTTTATATGAAGTCGCCCACCTTGAAAATG 166 consensus_9518#1 G-GATCAGTTGCACTTAGGTTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATG 418 consensus_9518#3 GTGATCAGTTGCCCTCAGGTTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATG 170 * ********** ** ****************************** ************* consensus_9518#0 AAATTCAAACATGTTTAGAATTTAGGT--------------------------------- 435 consensus_9518#2 AAATTCAAACATGTTTAGAATTTAGGT--------------------------------- 193 consensus_9518#1 AAATTCAAACATGTTTAGGATTTAGGTGAGTTGTATTTTAGTGTTTGCTTATTTACCACA 478 consensus_9518#3 AAATTCAAACATGTATAGAATTTAGGT--------------------------------- 197 ************** *** ******** consensus_9518#0 ------CTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTG 489 consensus_9518#2 ------CTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTG 247 consensus_9518#1 ATAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTG 538 consensus_9518#3 ------CTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTG 251 ****************************************************** consensus_9518#0 GGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGC 549 consensus_9518#2 GGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGC 307 consensus_9518#1 GGCGCAGAGTTGGAAGTTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGC 598 consensus_9518#3 GGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCCTTGGGAGC 311 **************** ********************************** ******** consensus_9518#0 TTGAACAACGAAAGGCTTTGTCTGACTCTTGTGATAAGCTGAAAAGTGCTGTTGAATCTA 609 consensus_9518#2 TTGAACAACGAAAGGCGTAATTTTCTTTTTAT--TAAATAGTTTAGTGTATTCCA----- 360 consensus_9518#1 TTGAACAACGAAAGGC-------------------------------------------- 614 consensus_9518#3 TTGAACAACGAAAG---------------------------------------------- 325 ************** consensus_9518#0 CTTCACAAACCATTAAAAAGAAACGAAATTATTTGGCTAGTTTTGGCCCAAAGTTGAAGG 669 consensus_9518#2 ------------------------------------------------------------ consensus_9518#1 ------------------------------------------------------------ consensus_9518#3 ------------------------------------------------------------ consensus_9518#0 ATGTTGCTGAAAGTACTTTGATTGTCCAGGAACTAATGGACTTACCATTTACAAGCGAGA 729 consensus_9518#2 ------------------------------------------------------------ consensus_9518#1 ------------------------------------------------------------ consensus_9518#3 ------------------------------------------------------------ consensus_9518#0 ATGAACAGTATAATTTGGCCTTTCTCCTACCTTCACC 766 consensus_9518#2 ------------------------------------- consensus_9518#1 ------------------------------------- consensus_9518#3 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||