These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 969 fasta sequence [AACGCTCTCACACTCACACTATTCGATTGTCCTAATTTCAAGAAATCAGCGATATGTTTGTTGCATGTTCTCATATTGGTCTGCAGTGGGTTGCGCTTTTACTGGCTTTGATCATGAGTTTCACAGTTCTAACAACATATCTCATTTCCATCTATAGAGGACATGTANNNNNNNNNNNNNNNNNNNNNNNNNCTACAGGTGCCTATCCACCAGAAAGTTGTATATTTGGTGAGGGATTAAACATAGCTGCTTTTATCAGTTTGATATGCTCCTTTTGCTGGTATTTAATTGCCCTAGAGAGAACGAAATTTATGGGCACACACCANNNNNNNNNNNNNNNNNNNNNATGCTTGTATTGTCTCTAATTGCTTCAATCGGTTTAACATTGGTTGGGAATTTTCAACAAGTTAACGTTGAATTAGTACATGATATTGGTGCTGGGATGGCTTTTTTCGGCACAACGCTTTATATCACTTTATGTGCTTTAGTTAGCAAACGATACCTTGGAANNNATTGGTGTATATGGGCTTTTAGACTTGTCTTAGGGATTATGGCAGCAATAACATCAAGTTTGTTTTCAGTCTGTCATACAATTTCCAGAATAAATTTCAACGGTACACAAGAAGAATCTTTGACTTATCGGCATCCTGGTCAAGGTGGATTTTCATTTTATCTATGCAGTACAAGTTTTGAGTGGGCTGCAGGATTTATCATCATAGTGTTTTTTACCACATGGGCTTACGAATTCAGATCATATGCTTTTCAGTTACCACAGGTTGTTAAAAAACACCCATTTGAATCCGATATCTATAGCCTCAAAAGCTGAAGACAGCTGCTGGTTACTTTAAAAGCTTTCTCCCTCAACTTCAAATAATCAAATAATTGAAACTTCTAACCCCTACGTTATCACTATATAAATCCATAATTACTTTAATATATTATTATTGATTATTCACCAATAAAACCACA] [+] EMBL CD081050 [AACGCTCTCACACTCACACTATTCGATTGTCCTAATTTCAAGAAATCAGCGATATGTTTGTTGCATGTTCTCATATTGGTCTGCAGTGGGTTGCGCTTTTACTGGCTTTGATCATGAGTTTCACAGTTCTAACAACATATCTCATTTCCATCTATAGAGGACATGTANNNNNNNNNNNNNNNNNNNNNNNNNCTACAGGTGCCTATCCACCAGAAAGTTGTATATTTGGTGAGGGATTAAACATAGCTGCTTTTATCAGTTTGATATGCTCCTTTTGCTGGTATTTAATTGCCCTAGAGAGAACGAAATTTATGGGCACACACCANNNNNNNNNNNNNNNNNNNNNATGCTTGTATTGTCTCTAATTGCTTCAATCGGTTTAACATTGGTTGGGAATTTTCAACAAGTTAACGTTGAATTAGTACATGATATTGGTGCTGGGATGGCTTTTTTCGGCACAACGCTTTATATCACTTTATGTGCTTTAGTTAGCAAACGATACCTTGGAANNNATTGGTGTATATGGGCTTTTAGACTTGTCTTAGGGATTATGGCAGCAATAACATCAAGTTTGTTTTCAGTCTGTCATACAATTTCCAGAATAAATTTCAACGGTACACAAGAAGAATCTTTGACTTATCGGCATCCT ] [-] EMBL CD073173 [ GGAATTTTCAACAAGTTAACGTTGAATTAGTACATGATATTGGTGCTGGGATGGC TTTTTCGGCACAACGCTTTATATCACTTTATGTGCTTTAGTTAGCAAACGATACCTTGGAACACATTGGTGTATATGGGCTTTTAGACTTGTCTTAGGGATTATGGCAGCAATAACATCAAGTTTGTTTTCAGTCTGTCATACAATTTCCAGAATAAATTTCAACGGTACACAAGAAGAATCTTTGACTTATCGGCATCCTGGTCAAGGTGGATTTTCATTTTATCTATGCAGTACAAGTTTTGAGTGGGCTGCAGGATTTATCATCATAGTGTTTTTTACCACATGGGCTTACGAATTCAGATCATATGCTTTTCAGTTACCACAGGTTGTTAAAAAACACCCATTTGAATCCGATATCTATAGCCTCAAAAGCTGAAGACAGCTGCTGGTTACTTTAAAAGCTTTCTCCCTCAACTTCAAATAATCAAATAATTGAAACTTCTAACCCCTACGTTATCACTATATAAATCCATAATTACTTTAATATATTATTATTGATTA ] [-] EMBL CD077106 [ GGTCAAGGTGGATTTTCATTTTATCTATGCAGTACAAGTTTTGAGTGGGCTGCAGGATTTATCATCATAGTGTTTTTTACCACATGGGCTTACGAATTCAGATCATATGCTTTTCAGTTACCACAGGTTGTTAAAAAACACCCATTTGAATCCGATATCTATAGCCTCAAAAGCTGAAGACAGCTGCTGGTTACTTTAAAAGCTTTCTCCCTCAACTTCAAATAATCAAATAATTGAAACTTCTAACCCCTACGTTATCACTATATAAATCCATAATTACTTTAATATATTATTATTGATTATTCACCAATAAAACCACA] [-] EMBL BG932549 [ CTTTTCAGTTACCACAGGTTGTTAAAAAACACCCATTTGAATCCGATATCTATAGCCTCAAAAGCTGAAGACAGCTGCTGGTTACTTTAAAAGCTTTCTC ] consensusID : consensus_9523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 585 fasta sequence [AGAGGACATGTAAATGCAGAATTGCCATTTATCAGCTCTACAGGTGCCTATCCACCAGAAAGTTGTATATTTGGTGAGGGATTAAACATAGCTGCTTTTATCAGTTTGATATGCTCCTTTTGCTGGTATTTAATTGCCCTAGAGAGAACGAAATTTATGGGCACACACCAACCAAATTGTCTTCTTAAATTTATGCTTGTATTGTCTCTAATTGCTTCAATCGGTTTAACATTGGTTGGGAAT-TTTCAACAAGTTAACGTTGAATTAGTACATGATATTGGTGCTGGGATGGCTTTTTTCGGCACAACGCTTTATATCACTTTATGTGCTTTAGTTAGCAAACGATACCTTGGAACACATTGGTGTATATGGGCTTTTAGACTTGTCTTAGGGATTATGGCAGCAATAACATCAAGTTTGTTTTCAGTCTGTCATACAATTTCCAGAATAAATTTCAACGGTACACAAGAAGAATCTTTGACTTATCGGCATCCTGGTCAAGGTGGATTTTCATTTTATCTATGCAGTACAAGTTTTGAGTGGGCTGCAGGATTTATCATCATAGTGTTTTTTACCACATGGGCT] [+] EMBL CD078710 [AGAGGACATGTAAATGCAGAATTGCCATTTATCAGCTCTACAGGTGCCTATCCACCAGAAAGTTGTATATTTGGTGAGGGATTAAACATAGCTGCTTTTATCAGTTTGATATGCTCCTTTTGCTGGTATTTAATTGCCCTAGAGAGAACGAAATTTATGGGCACACACCAACCAAATTGTCTTCTTAAATTTATGCTTGTATTGTCTCTAATTGCTTCAATCGGTTTAACATTGGTTGGGAAT TTTCAACAAGTTAACGTTGAATTAGTACATGATATTGGTGCTGGGATGGCTTTTTTCGGCACAACGCTTTATATCACTTTATGTGCTTTAGTTAGCAAACGATACCTTGGAACACATTGGTGTATATGGGCTTTTAGACTTGTCTTAGGGATTATGGCAGCAATAACATCAAGTTTGTTTTCAGTCTGTCATACAATTTCCAGAATAAATTTCAACGGTACACAAGAAGAATCTTTGACTTATCGGCATCCTGGTCAAGGTGGATTTTCATTTTATCTATGCAGTACAAGTTTTGAGTGGGCTGCAGGATTTATCATCATAGTGTTTTTTACCACATGGGCT] [+] EMBL CD180790 [ TATTTGGTGAGGGATTAAACATAGCTGCTTTTATCAGTTTGATATGCTCCTTTTGCTGGTATTTAATTGCCCTAGAGAGAACGAAATTTATGGGCACACACCAACCAAATTGTCTTCTTAAATTTATGCTTGTATTGTCTCTAATTGCTTCAATCGGTTTAACATTGGTTGGGAATCTTTCAACAAGTTAACGTTGAATTAGTACATGATATTGGTGCTGGGATGGCTTTTTTCGGCACAACGCTTTATATCACTTTATGTGCTTTAGTTAGCAAACGATACCTTGGAACACATTGGTGTATATGGGCTTTTAGACTTGTCTTAGGGATTATGGCAGCAATAACATCAAGTTTGTTTTCAGTCTGTCATACAATTTCCAGAATAAATTTCAACGGTACACAAGAAGAATCTTTGACT ] [+] EMBL CD181098 [ TATTTGGTGAGGGATTAAACATAGCTGCTTTTATCAGTTTGATATGCTCCTTTTGCTGGTATTTAATTGCCCTAGAGAGAACGAAATTTATGGGCACACACCAACCAAATTGTCTTCTTAAATTTATGCTTGTATTGTCTCTAATTGCTTCAATCGGTTTAACATTGGTTGGGAAT TTTCAACAAGTTAACGTTGAATTAGTACATGATATTGGTGCTGGGATGGCTTTTTTCGGCACAACGCTTTATATCACTTTATGTGCTTTAGTTAGCAAACGATACCTTGGAACACATTGGTGTATATGGGCTTTTAGACTTGTCTTAGGGATTATGGCAGCAATAACATCAAGTTTGTTTTCAGTCTGTCATACAATTTCCAGAATAAATTTCAACGGTACACAAGAAGAATCTTTGACT ] [-] EMBL BG932428 [ AGCAATAACATCAAGTTTGTTTTCAGTCTGTCATACAATTTCCAGAATAAATTTCAACGGTACACAAGAAGAATCTTTGACTTATCGGCATCCTGGTCAAGGTGGATTTTCATTTTATCTATGCAGTACAAGTTTTGAGTGGGCTGCAGGATTTATCATCATAGTGTTTTTTACCAC ] consensusID : consensus_9523#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [CACGAGGCNCCTTTTGCTGGTATTTAATTGCCCTAAANAGAACGAAATTTATGGGGCACACACCAACCAAATTGTCTTCTTAAATTTATGCTTGTATTGTCTCTAATTGCTTCAATCGGTTTAACATNGGTTGGGAATTTTCAACAAGTTAACGTTGAATTAGTACATGAATATTGGTGCTGGGAATGGCTTTTTNCGGCACAACGCTTTATATCACTTTATGTGCTTTAGTTTAGCAAACGAATACCTTGGAAACACATTGGTGTTATATGGGGCTTTTANACTTGTCTTAGGGGATTATGGGCACCAAATAACATCAAGTTTGGTTTNCAGTTCTGGTCATACAAATTTCCCANAAATAAATTTCAACGGGTACNCAAAAAAANAATCCTTTGAACTTATCGGGCATCCTGGGTCAAGGTGGAATTTTCATTTTAACCTATGCCANTTACAAATTTTTGANTGGGCTGCAGGAATTTANCACNCA] [+] EMBL AA559825 [CACGAGGCNCCTTTTGCTGGTATTTAATTGCCCTAAANAGAACGAAATTTATGGGGCACACACCAACCAAATTGTCTTCTTAAATTTATGCTTGTATTGTCTCTAATTGCTTCAATCGGTTTAACATNGGTTGGGAATTTTCAACAAGTTAACGTTGAATTAGTACATGAATATTGGTGCTGGGAATGGCTTTTTNCGGCACAACGCTTTATATCACTTTATGTGCTTTAGTTTAGCAAACGAATACCTTGGAAACACATTGGTGTTATATGGGGCTTTTANACTTGTCTTAGGGGATTATGGGCACCAAATAACATCAAGTTTGGTTTNCAGTTCTGGTCATACAAATTTCCCANAAATAAATTTCAACGGGTACNCAAAAAAANAATCCTTTGAACTTATCGGGCATCCTGGGTCAAGGTGGAATTTTCATTTTAACCTATGCCANTTACAAATTTTTGANTGGGCTGCAGGAATTTANCACNCA] consensusID : consensus_9523#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [ACATTTGATGCCTAAATGATTTTACTTTCAGGGATTTTCATTTTATCTATGCAGTACAAGTTTTGAGTGGGCTGCAGGATTTATCATCATAGTGTTTTTTACCACATGGGCTTACGAATTCAGATCATATGCTTTTCAGTTACCACAGGTAAATTTTGATGTTATTAGAATCCTATTCTTTACCACTGTTCTTTTAACATAATGCCAAAAATGCATGTTAAACGAACGCTGACTTATGGTTATTATTTTTAACACCTGAATCTAACAAATAGTCTTCAGGTTTCTAGAATATGGT] [-] EMBL CD145524 [ACATTTGATGCCTAAATGATTTTACTTTCAGGGATTTTCATTTTATCTATGCAGTACAAGTTTTGAGTGGGCTGCAGGATTTATCATCATAGTGTTTTTTACCACATGGGCTTACGAATTCAGATCATATGCTTTTCAGTTACCACAGGTAAATTTTGATGTTATTAGAATCCTATTCTTTACCACTGTTCTTTTAACATAATGCCAAAAATGCATGTTAAACGAACGCTGACTTATGGTTATTATTTTTAACACCTGAATCTAACAAATAGTCTTCAGGTTTCTAGAATATGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9523#1 ------------------------------------------------------------ consensus_9523#2 ------------------------------------------------------------ consensus_9523#0 AACGCTCTCACACTCACACTATTCGATTGTCCTAATTTCAAGAAATCAGCGATATGTTTG 60 consensus_9523#3 ------------------------------------------------------------ consensus_9523#1 ------------------------------------------------------------ consensus_9523#2 ------------------------------------------------------------ consensus_9523#0 TTGCATGTTCTCATATTGGTCTGCAGTGGGTTGCGCTTTTACTGGCTTTGATCATGAGTT 120 consensus_9523#3 ------------------------------------------------------------ consensus_9523#1 -----------------------------------AGAGGACATGTAAATGCAGAATTGC 25 consensus_9523#2 ------------------------------------------------------------ consensus_9523#0 TCACAGTTCTAACAACATATCTCATTTCCATCTATAGAGGACATGTANNNNNNNNNNNNN 180 consensus_9523#3 ------------------------------------------------------------ consensus_9523#1 CATTTATCAGCTCTACAGGTGCCTATCCACCAGAAAGTTGTATATTTGGTGAGGGATTAA 85 consensus_9523#2 ------------------------------------------------------------ consensus_9523#0 NNNNNNNNNNNNCTACAGGTGCCTATCCACCAGAAAGTTGTATATTTGGTGAGGGATTAA 240 consensus_9523#3 ------------------------------------------------------------ consensus_9523#1 ACATAGCTGCTTTTATCAGTTTGATATGCTCCTTTTGCTGGTATTTAATTGCCCTAGAGA 145 consensus_9523#2 ---------------------CACGAGGCNCCTTTTGCTGGTATTTAATTGCCCTAAANA 39 consensus_9523#0 ACATAGCTGCTTTTATCAGTTTGATATGCTCCTTTTGCTGGTATTTAATTGCCCTAGAGA 300 consensus_9523#3 ------------------------------------------------------------ consensus_9523#1 GAACGAAATTTATGGG-CACACACCAACCAAATTGTCTTCTTAAATTTATGCTTGTATTG 204 consensus_9523#2 GAACGAAATTTATGGGGCACACACCAACCAAATTGTCTTCTTAAATTTATGCTTGTATTG 99 consensus_9523#0 GAACGAAATTTATGGG-CACACACCANNNNNNNNNNNNNNNNNNNNN-ATGCTTGTATTG 358 consensus_9523#3 -----------------------------------------------------------A 1 consensus_9523#1 TCTCTAATTGCTTCAATCGGTTTAACATTGGTTGGGAATTTTCAACAAGTTAACGTTGAA 264 consensus_9523#2 TCTCTAATTGCTTCAATCGGTTTAACATNGGTTGGGAATTTTCAACAAGTTAACGTTGAA 159 consensus_9523#0 TCTCTAATTGCTTCAATCGGTTTAACATTGGTTGGGAATTTTCAACAAGTTAACGTTGAA 418 consensus_9523#3 CATTTGAT-GCCTAAAT-GATTTTACTTT---CAGGGATTTTCATTTTATCTATGCAGTA 56 * * ** ** * *** * *** ** * ** ******* * * * * * consensus_9523#1 TTAGTACATGA-TATTGGTGCTGGGA-TGGCTTTTTTCGGCACAACGCTTTATATCACTT 322 consensus_9523#2 TTAGTACATGAATATTGGTGCTGGGAATGGCTTTTTNCGGCACAACGCTTTATATCACTT 219 consensus_9523#0 TTAGTACATGA-TATTGGTGCTGGGA-TGGCTTTTTTCGGCACAACGCTTTATATCACTT 476 consensus_9523#3 CAAGTTT-TGA--GTGGGCTGCAGGA------TTTATCATCATAGTGTTTTTTACCAC-- 105 *** *** * ** *** *** * ** * * *** ** *** consensus_9523#1 TATGTGCTTTAGTT-AGCAAACGA-TACCTTGGAA-CAC-ATTGGTGT-ATATGGG-CTT 376 consensus_9523#2 TATGTGCTTTAGTTTAGCAAACGAATACCTTGGAAACAC-ATTGGTGTTATATGGGGCTT 278 consensus_9523#0 TATGTGCTTTAGTT-AGCAAACGA-TACCTTGGAA-NNN-ATTGGTGT-ATATGGG-CTT 530 consensus_9523#3 -ATGGGCTTACGAATTCAGATCATATGCTTTTCAGTTACCACAGGTAAATTTTGATGTTA 164 *** **** * * * * * ** * * *** * ** * consensus_9523#1 TTAGA--CTTGTCTTAGGG-ATTATGGCAGC--AATAACATCAAGTTTG-TTTTCAGTCT 430 consensus_9523#2 TTANA--CTTGTCTTAGGGGATTATGGGCACCAAATAACATCAAGTTTGGTTTNCAGTTC 336 consensus_9523#0 TTAGA--CTTGTCTTAGGG-ATTATGGCAGC--AATAACATCAAGTTTG-TTTTCAGTCT 584 consensus_9523#3 TTAGAATCCTATTCTTTACCACTGTTCTTTTAACATAATGCCAAAAATGCATGTTAAACG 224 *** * * * * * * * * **** *** ** * * consensus_9523#1 --GTCATACAATTTCC---AGAATAAATTTCAACGG---TACACAAGAAGAATCTTT--G 480 consensus_9523#2 TGGTCATACAAATTTCCCANAAATAAATTTCAACGGGTACNCAAAAAAANAATCCTTTGA 396 consensus_9523#0 --GTCATACAATTTCC---AGAATAAATTTCAACGG---TACACAAGAAGAATCTTT--G 634 consensus_9523#3 ----AACGCTGACTTAT-GGTTATTATTTTTAACACCTGAATCTAACAAATAGTCTTCAG 279 * * * ** * *** *** ** ** * ** consensus_9523#1 ACTTATCGG-CATCCTGG-TCAAGGTGGA-TTTTCATTTTA-TCTATGC--AGTACAAGT 534 consensus_9523#2 ACTTATCGGGCATCCTGGGTCAAGGTGGAATTTTCATTTTAACCTATGCCANTTACAAAT 456 consensus_9523#0 ACTTATCGG-CATCCTGG-TCAAGGTGGA-TTTTCATTTTA-TCTATGC--AGTACAAGT 688 consensus_9523#3 GTTTCTAGAATATGGT-------------------------------------------- 295 ** * * ** * consensus_9523#1 TTT-GAGTGGGCTGCAGGA-TTTATCATCATAGTGTTTTTTACCACATGGGCT------- 585 consensus_9523#2 TTTTGANTGGGCTGCAGGAATTTANCA-CNCA---------------------------- 487 consensus_9523#0 TTT-GAGTGGGCTGCAGGA-TTTATCATCATAGTGTTTTTTACCACATGGGCTTACGAAT 746 consensus_9523#3 ------------------------------------------------------------ consensus_9523#1 ------------------------------------------------------------ consensus_9523#2 ------------------------------------------------------------ consensus_9523#0 TCAGATCATATGCTTTTCAGTTACCACAGGTTGTTAAAAAACACCCATTTGAATCCGATA 806 consensus_9523#3 ------------------------------------------------------------ consensus_9523#1 ------------------------------------------------------------ consensus_9523#2 ------------------------------------------------------------ consensus_9523#0 TCTATAGCCTCAAAAGCTGAAGACAGCTGCTGGTTACTTTAAAAGCTTTCTCCCTCAACT 866 consensus_9523#3 ------------------------------------------------------------ consensus_9523#1 ------------------------------------------------------------ consensus_9523#2 ------------------------------------------------------------ consensus_9523#0 TCAAATAATCAAATAATTGAAACTTCTAACCCCTACGTTATCACTATATAAATCCATAAT 926 consensus_9523#3 ------------------------------------------------------------ consensus_9523#1 ------------------------------------------- consensus_9523#2 ------------------------------------------- consensus_9523#0 TACTTTAATATATTATTATTGATTATTCACCAATAAAACCACA 969 consensus_9523#3 ------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||