These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9541#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1530 fasta sequence [GAATCTTTAACACCTGAAACTAACGAACCATCTTCAGATAATCGAAATAAAAATTATGTTTTTGATATTCCCCCACCACCAATACCACCTACAGAAATGTATTCACCATATGCAAAAGCTACAGCTGGTGGTGGTAATGAAAGCGTCTTAGCTTTGGAACGTAGACAAGCTGAACTTGAAGCTCGTGCAGCCGAATTAGATCGTCGAGAAAAAGAACAACAAGCTCGTGCGAATACAATTCATTCAGGTCCAAGTCCACATAATTGGCCACCATTCCCTCCATTCTGTCCATGCAAACCATGTGTTCGACAAGATTTTGAAAATGATATTCCATTCGATTGTCGATGGATGGCTAAAATGGGTTATGGTATTTGGTTGGGCTATGCTATCTTGTTAGTATTCAATATGTTTGGAGCACTAGGCTACTTTATTGTTGGTACCGGTGCAGCTGAAGGACCATTGTTTGGTGCATCAATTTTACTAGTGCTTGTTATGCCACCTGCCAGCTTTTTCGGATGGCATCGACCTTTGTATAAAGCATTAAGATCAGATAGCTCAGCAAATTATTTAATATTTTTCCTTTTCTTTTCTGGACAAACTATTATTATTTTAATACAATGCCTTGGAATTGATTATCTTGGATCATGTGGTTGGATTAATGGGATAAAAACTGTAAATCATAATGATGGTGTTGGTGTTCTAATGTTATTGATTGCTACAATATTCAGTATTCTTGCAGGATTTTGTAGTTTCCTGTTATTTAAGGTTCATAAATATTATCGATCATCTGGAGCAAGCTTACATAAAGCTAAACTAGAAATGGCTAATGCAGGAGTATTTGAACGTTCTGGAGGATTTGGTGCAATGCCATAATTGAAGAAAG-AAAAAAACAAACAAACAAACAAGCAATTCATATATAATAATCAGTTAACTTATAACACAATTTAATCAATATTGATACAGTTTTGTTTGTTTGTTTGTTTTTCTTCGACAGGAAACTGGACATTATTCTATCCCTTACATATCAATTTCATAAAACCACCAGTGATATCTTATTTTTGTTTTTGCTCTTCTATACACACAATGTTTGTTGTTGTGGTTGTTGTTGTTTTCTCCCCCCCCCC---CACACACACACTTTTTTATTGATTGTTAAGTTTTACATGTAAAGAATAAATAAACA-AAGC-A-ACTAATGACT----GATTCTTTTTTTAAAAAATTATTATTCATTTATTTNCAATGATCAATGTTCACATATNCAA-AACACACACACACCCACACACATGCACAATTTGAATGACAACATGATGAGTACTTTTTCTGTTTATATTGGAAAAAGAATCCATCATCTTTCTTTTCTTTTGTTTACCATGGGGGGGATGGGTAATTTCTTCACATACCCAAGATGGTGGGGGCTGAATATTAAACACATGACCCTGGTACCTAACTGGAATACAAAACGGGCAAAAAACCCCATTTTTTGTTTAAAATGGCGATAAAGCAAAGGTTAGGGGGGGGGTGTGACCAACAAGGAGA] [+] EMBL CD096114 [GAATCTTTAACACCTGAAACTAACGAACCATCTTCAGATAATCGAAATAAAAATTATGTTTTTGATATTCCCCCACCACCAATACCACCTACAGAAATGTATTCACCATATGCAAAAGCTACAGCTGGTGGTGGTAATGAAAGCGTCTTAGCTTTGGAACGTAGACAAGCTGAACTTGAAGCTCGTGCAGCCGAATTAGATCGTCGAGAAAAAGAACAACAAGCTCGTGCGAATACAATTCATTCAGGTCCAAGTCCACATAATTGGCCACCATTCCCTCCATTCTGTCCATGCAAACCATGTGTTCGACAAGATTTTGAAAATGATATTCCATTCGATTGTCGATGGATGGCTAAAATGGGTTATGGTATTTGGTTGGGCTATGCTATCTTGTTAGTATTCAATATGTTTGGAGCACTAGGCTACTTTATTGTTGG ] [+] EMBL CD166479 [ taccGTAATGAAAGCGT TTAGC TTGGAACGTAGAC AG GAAC TGAAGCTCGTGCAGCCGAATTAGATCGTCGAGAAAAAGAACAACAAGCTCGTGCGAATACAATTCATTCAGGTCCAAGTCCACATAATTGGCCACCATTCCCTCCATTCTGTCCATGCAAACCATGTGTTCGACAAGATTTTGAAAATGACATTCCATTCGATTGTCGATGGATGGCTAAAATGGGTTATGGT ] [-] EMBL CD185065 [ TGAAAACGTCTTAGCTTTGGAACGTAGACAAGCTGAACTTGAAGCTCGTGCAGCCGAATTAGATCGTCGAGAAAAAGAACAACAAGCTCGTGCGAATACAATTCATTCAGGTCCAAGTCCACATAATTGGCCACCATTCCCTCCATTCTGTCCATGCAAACCATGTGTTCGACAAGATTTTGAAAATGATATTCCATTCGATTGTCGATGGATGGCTAAAATGGGTTATGGTATTTGGTTGGGCTATGCTATCTTGTTAGTATTCAATATGTTTGGAGCACTAGGCTACTTTATTGTTGGTACCGGTGCAGCTGAAGGACCATTGTTTGATGCATCAATTTTACTAGTGCTTGTTATGCCACCTGCCAGCTTTTTCGGATGGCATCGACCTTTGTATAAAGCATTAAGAT ] [-] EMBL CD195955 [ TGTCCATGCAAACCATGTGTTCGACAAGATTTTGAAAATGATATTCCATTCGATTGTCGATGGATGGCTAAAATGGGTTATGGTATTTGGTTGGGCTATGCTATCTTGTTAGTATTCAATATGTTTGGAGCACTAGGCTACTTTATTGTTGGTACCGGTGCAGCTGAAGGACCATTGTTTGGTGCATCAATTTTACTAGTGCTTGTTATGCCACCTGCCAGCTTTTTCGGATGGCATCGACCTTTGTATAAAGCATTAAGATCAGATAGCTCAGCAAATTATTTAATATTTTTCCTTTTCTTTTCTGGACAAACTATTATTATTTTAA ] [-] EMBL CD096173 [ AAATGATATGCCATTCGATTGTCGATGGATGGCTAAAATGGGTTATGGTATTTGGTTGGGCTATGCTATNNNNTCAGTATTCAATATGTTTGGAGCGCTAGGCTACTTTATTGTTGGT ] [-] EMBL CD171166 [ CTACTTTATTGTTGGTACCGGTGCAGCTGAAGGACCATTGTTTGGTGCATCAATTTTACTAGTGCTTGTTATGCCACCTGCCAGCTTTTTCGGATGGCATCGACCTTTGTATAAAGCATTAAGATCAGATAGCTCAGCAAATTATTTAATATTTTTCCTTTTCTTTTCTGGACAAACTATTATTATTTTAATACAATGCCTTGGAATTGATTATCTTGGATCATGTGGTTGGATTAATGGGATAAAAACTGTAAATCATAATGATGGTGTTGGTGTTCTAATGTTATTGATTGCTACAATATTCAGTATTCTTGCAGGATTTTGTAGTTTCCTGTTATTTAAGGTTCATAAATATTATCGATCATCTGGAGCAAGCTTACATAAAGCTAAACTAGAAATGGCTAATGCAGGAGTAT ] [+] EMBL CD079921 [ GTTATTTAAGGTTCATAAATATTATCGATCATCTGGAGCAAGCTTACATAAAGCTAAACTAGAAATGGCTAATGCAGGAGTATTTGAACGTTCTGGAGGATTTGGTGCAATGCCATAATTGAAGAAAGAAAAAAAACAAACAAACAAACAAGCAATTCATATATAATAATCAGTTAACTTATAACACAATTTAATCAATATTGATACAGTTTTGTTTGTTTGTTTGTTTTTCTTCGACAGGAAACTGGACATTATTCTATCCCTTACATATCAATTTCATAAAACCACCAGTGATATCTTATTTTTGTTTTTGCTCTTCTATACACACAATGTTTGTTGTTGTGGGTGTTGTTGTTTTCTCCCCCCCCCC CACACACACACTTTTTTATTGATTGTTAAGTTTTACATGTAAAGAATAAATAAACANNAGC A ACTAATGACT GATTCTTTTTTTAAAAAATTATTATTCATTTATTTNCAATGATCAATGTTCACATATNCAA AACACACACACACCCACACACATGCACAATTTGAATGACAACATGATGAGTACTTTTTCTGTTTATATTGGAAAAAGAATCCATCATCTTTCTTTTCTTTTGTTTACCATGGGGGGGATGGGTAATTTCTTCACATACCCAAGATGGTGGGGGCTGAATATTAAACACATGACCCTGGTACCTAACTGGAATACAAAACGGGCAAAAAACCCCATTTTTTGTTTAAAATGGCGATAAAGCAAAGGTTAGGGGGGGGGTGTGACCAACAAGGAGA] [+] EMBL AI976940 [ TCATCTGGAGCAAGCTTACATAAAGCTAAACTAGAAATGGCTAATGCAGGAGTATTTGAACGTTCTGGAGGATTTGGTGCAATGCCATAATTGAAGAAAG AAAAAAACAAACAAACAAACAAGCAATTCATATATAATAATCAGTTAACTTATAACACAATTTAATCAATATTGATACAGTTTTGTTTGTTTGTTTGTTTTTCTTCGACAGGAAACTGGACATTATTCTATCCCTTACATATCAATTTCATAAAACCACCAGTGATATCTTATTTTTGTTTTTGCTCTTCTATACACACAATGTTTGTTGTTGTGGTTGTTGTTGTTATCTCCCCCCCCCCACACACACACACACTTTTTTATTGATTGTTAAGTTTTACATGTAAAGAATAAATAAACA AAGC AGACTAATGACTGAGAGATTCTTTTTTTAAAAAATTATTATTCATTTATTTCCAATGATCAATGTTCACATATCCAACAACA ACACACACCCACACACATGCAC ATTTGAATGACAACATGATGAGTAC TTTTCTG ] [+] EMBL CD197536 [ GCTTACATTAAGCTAAACTAGAAATGGCTAATGCAGGAGTATTTGAACGTTCTGGAGGATTTGGTGCAATGCCATAATTGAAGAAAG AAAAAAACAAACAAACAAACAAGCAATTCATATATAATAATCAGTTAACTTATAACACAATTTAATCAATATTGATACAGTTTTGTTTGTTTGTTTGTTTTTCTTCGACAGGAAACTGGACATTATTCTATCCCTTACATATCAATTTCATAAAACCACCAGTGATATCTTATTTTTGTTTTTGCTCTTCTATACACACAATGTTTGTTGTTGTGGTTGTTGTTGTTTTCTCCCCCCCCCC CACACACACACTTTTTTATTGATTGTTAAGTTTTACATGTAAAGAATAAATAAACA AAGCAA ACTAATGACT GATTCTTTTTTTAAAAAATTA ] consensusID : consensus_9541#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [CCAAACAAACATTTTTTATTGATTGTTAAGTTTTCCATGAAAGAATAAATAACCCAAGCCCAACTAATGGCTGATCTTTTTTTAAAATATTATTATTCATTTATTTCCAATGATCAATGTTCACATATCCAACAACAACACACACCCCCACACATGCACATTTGAATGACAACATGATGAGTACTTTTCTGTTTTATATTGAAAAAAGAGNCGATCATCTTTTCTTTTCTTTTGTTTTACCATGGGGGTGTATGGTTAGTTTTCTTCTACATACTCATAGTTGTTGTTGTCTTGATTATTATCATCATTGACTTTGTTTACCTTCCCTGTTATTACTACTACTGTTTTATACATACCCCATTTCTCTGTTTTAATCTGTTCGTTATATGCGAATGTTTTTAGGTAGTGTGTTTGTTGACTAAACTAAATGGATTGTATGGTATTTTTATACGAGAGAAAGAAAAACTTGTTTCATCATGTGTTTTTTTTGTTTCTCTTTTCAATCTTCTTTCTTTTTTTTTCTTTTTTAAATCATTATCGTCATGTATTGTAACTTGATAGAATTAAAAGTAAATGAAA] [-] EMBL CD074117 [CCAAACAAACATTTTTTATTGATTGTTAAGTTTTCCATGAAAGAATAAATAACCCAAGCCCAACTAATGGCTGATCTTTTTTTAAAATATTATTATTCATTTATTTCCAATGATCAATGTTCACATATCCAACAACAACACACACCCCCACACATGCACATTTGAATGACAACATGATGAGTACTTTTCTGTTTTATATTGAAAAAAGAGNCGATCATCTTTTCTTTTCTTTTGTTTTACCATGGGGGTGTATGGTTAGTTTTCTTCTACATACTCATAGTTGTTGTTGTCTTGATTATTATCATCATTGACTTTGTTTACCTTCCCTGTTATTACTACTACTGTTTTATACATACCCCATTTCTCTGTTTTAATCTGTTCGTTATATGCGAATGTTTTTAGGTAGTGTGTTTGTTGACTAAACTAAATGGATTGTATGGTATTTTTATACGAGAGAAAGAAAAACTTGTTTCATCATGTGTTTTTTTTGTTTCTCTTTTCAATCTTCTTTCTTTTTTTTTCTTTTTTAAATCATTATCGTCATGTATTGTAACTTGATAGAATTAAAAGTAAATGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9541#0 GAATCTTTAACACCTGAAACTAACGAACCATCTTCAGATAATCGAAATAAAAATTATGTT 60 consensus_9541#1 ------------------------------------------------------------ consensus_9541#0 TTTGATATTCCCCCACCACCAATACCACCTACAGAAATGTATTCACCATATGCAAAAGCT 120 consensus_9541#1 ------------------------------------------------------------ consensus_9541#0 ACAGCTGGTGGTGGTAATGAAAGCGTCTTAGCTTTGGAACGTAGACAAGCTGAACTTGAA 180 consensus_9541#1 ------------------------------------------------------------ consensus_9541#0 GCTCGTGCAGCCGAATTAGATCGTCGAGAAAAAGAACAACAAGCTCGTGCGAATACAATT 240 consensus_9541#1 ------------------------------------------------------------ consensus_9541#0 CATTCAGGTCCAAGTCCACATAATTGGCCACCATTCCCTCCATTCTGTCCATGCAAACCA 300 consensus_9541#1 ------------------------------------------------------------ consensus_9541#0 TGTGTTCGACAAGATTTTGAAAATGATATTCCATTCGATTGTCGATGGATGGCTAAAATG 360 consensus_9541#1 ------------------------------------------------------------ consensus_9541#0 GGTTATGGTATTTGGTTGGGCTATGCTATCTTGTTAGTATTCAATATGTTTGGAGCACTA 420 consensus_9541#1 ------------------------------------------------------------ consensus_9541#0 GGCTACTTTATTGTTGGTACCGGTGCAGCTGAAGGACCATTGTTTGGTGCATCAATTTTA 480 consensus_9541#1 ------------------------------------------------------------ consensus_9541#0 CTAGTGCTTGTTATGCCACCTGCCAGCTTTTTCGGATGGCATCGACCTTTGTATAAAGCA 540 consensus_9541#1 ------------------------------------------------------------ consensus_9541#0 TTAAGATCAGATAGCTCAGCAAATTATTTAATATTTTTCCTTTTCTTTTCTGGACAAACT 600 consensus_9541#1 ------------------------------------------------------------ consensus_9541#0 ATTATTATTTTAATACAATGCCTTGGAATTGATTATCTTGGATCATGTGGTTGGATTAAT 660 consensus_9541#1 ------------------------------------------------------------ consensus_9541#0 GGGATAAAAACTGTAAATCATAATGATGGTGTTGGTGTTCTAATGTTATTGATTGCTACA 720 consensus_9541#1 ------------------------------------------------------------ consensus_9541#0 ATATTCAGTATTCTTGCAGGATTTTGTAGTTTCCTGTTATTTAAGGTTCATAAATATTAT 780 consensus_9541#1 ---------------------------------------------CCAAACAAACATTTT 15 * *** *** * consensus_9541#0 CGATCATCTGGAGCAAGCTTACATAAAGCTAAACTAGAAATGGCTAATGCAGGAGTATTT 840 consensus_9541#1 TTATTGATTGTTA-AGTTTTCCATGAAA---------GAATAAATAACCCAAGCCCAACT 65 ** ** * ** *** ** *** *** ** * * * consensus_9541#0 GAACGTTCTGGAGGATTTGGTGCAATGCCATAATTGAAGAAAGAAAAAAACAAACAAACA 900 consensus_9541#1 AATGGCT---GATCTTTTTTTAAAATATTATTATTCATTTATTT----------CCAATG 112 * * * ** *** * *** ** *** * * * ** consensus_9541#0 AACAAGCAATTCATATATAATAATCAGTTAACTTATAACACAATTTAATCAATATTGATA 960 consensus_9541#1 ATCAATGTTCACATATCCAACAACAACACACACCCCCACACATGCACATTTG-AATGACA 171 * *** ***** ** ** * * ***** ** * *** * consensus_9541#0 CAGTTTTGTTTGTTTGTTTGTTTTTCTTCGACAGGAAACTGGACATTATTCTATCCCTTA 1020 consensus_9541#1 ACATGATGAGTACTTTTCTGTTTTATATTGAAAAAAGAGNCGA--TCATCTTTTCTTTT- 228 * ** * ** * ****** * ** * * * ** * ** * ** ** consensus_9541#0 CATATCAATTTCATAAAACCACCAGTGATATCTTATTTTTGTTTTTGCTCTTCTATACAC 1080 consensus_9541#1 -------CTTTTGTTTTACCA----TGGGGGTGTATGGTTAGTTTT---CTTCTACATAC 274 *** * **** ** *** ** **** ****** * ** consensus_9541#0 ACAATGTTTGTTGTTGTGGTTGTTGTTGTTTTCTCCCCCCCCCCCACACACACACTTTTT 1140 consensus_9541#1 TCA----TAGTTGTTGTTGTCTTGATTATTATCATCATTGACTTTGTTTACCTTCCCTGT 330 ** * ******** ** * ** ** ** * * ** * * * consensus_9541#0 TATTGATTGTTAAGTTTTACATGTAAAGAATAAATAAACAAAGCAACTAATGACTGATTC 1200 consensus_9541#1 TATTACTACTACTGTTTTATACATACCCCATTTCTCTGTT------TTAAT--CTGTTCG 382 **** * * ****** * ** ** * **** *** * consensus_9541#0 TTTTTTTAAAAAATTATTATTCATTTATTTNCAATGATCAATGTTCACATATNCAAAACA 1260 consensus_9541#1 TTATATGCGAATGTTTTTAGGTAGT-GTGTTTGTTGACTAAACTAAATGGATT-GTATGG 440 ** * * ** ** *** * * * * *** ** * * ** * consensus_9541#0 CACACACACCCACACACATGCACAATTTGAATGACAACATGATGAGTACTTTTTCTGTTT 1320 consensus_9541#1 TATTTTTATACGAGAGAAAGAAAAACTTGTTT-----CATCAT--GTGTTTTTTTTGTTT 493 * * * * * * ** *** * *** ** ** ***** ***** consensus_9541#0 ATATTGGAAAAAGAATCCATCATCTTTCTTTTCTTTTGTTTACCATGGGGGGGATGGGTA 1380 consensus_9541#1 CTCTTT---------TCAATCTTCTTTCTTTTTTTTTCTTTTTTA----------AATCA 534 * ** ** *** ********** **** *** * * consensus_9541#0 ATTTCTTCACATACCCAAGATGGTGGGGGCTGAATATTAAACACATGACCCTGGTACCTA 1440 consensus_9541#1 TTATCGTCATGTATTGTAACTTGATAGAATTAAAAGTAAATGAAA--------------- 579 * ** *** ** * * * * * ** * ** * * consensus_9541#0 ACTGGAATACAAAACGGGCAAAAAACCCCATTTTTTGTTTAAAATGGCGATAAAGCAAAG 1500 consensus_9541#1 ------------------------------------------------------------ consensus_9541#0 GTTAGGGGGGGGGTGTGACCAACAAGGAGA 1530 consensus_9541#1 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||