These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9570#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1108 fasta sequence [GCTATTCATTTTTATCGAAGTGGATAGAAAAGATTTAGGGTCCCAGTGATTCAAAATTAACTTATGTGTATCCCCAATAATAGGCCAATGTAAATTCCATAAAATAATAGAGCCATCAGAATAACCACAACATAATAAAGTATTGTCTAGTCTAGAAGTTTTAAGAGTATTACATGCAGGCGTAGAAAGACTACTGTTGTTGGTATATGAAGGAAATGGTAATATGAAATTCTCACATTCACCTGTAGGCGTACTAGACGCAGCTAAGAATAAGACAATAGATCCATTACTATATCCAGAAGCAACAACACGGTCATTTAAAATCCAGCTGACACACCTAGGCTGCATTTCGTTGGAAGATGAACTTTCAGGACTGATATTACTGACGCGTAACTGCGAACGAAACGAGATTTGTTTTTGGCATTTGTATAAATTTATTGGGCCAGCACTAGTTCCAACGGCTATATATCTTCCTGATCTTTGCGGAAAAGCTATGCAAGTTGCTGTGAAATTATGTGATAGCAAACTGAAAGTAGTTATATCTGATGTGTTTTGATCGTACACAAGATTTTTGCCAGCATACAGACGTCGAAAGAAAATAGCAGAACCAGAGTGGTCAATAACAGCTAGCTTACATGACCGGGGATCCCACTGAATCGATCGTAGCGAACACGTCAC-TGTCATTTGAGGCTTGT-AAGTCAAGGAAGGAGAATCAGGAATCTCCAAGTTACGGATGTCTGTATTTGACAATGACGGTCCAAACGCATTCTTATCATATAGTACAGACCAAAAAGAGACTGAAGAGTTTTGTACAGCAGCAAGATACATTCGTAGGTCAGTAAGAAGAGAATCCAGACTTTGTCAGGCAACAATTCAGTGGCATCGTTCAATGAAGAAGGCTGCTGAGCACTTGAAGGTCGAAGTGTCGTAAAAGGATTGGTGCGTCACCTCTGAAATTTGTAAGTTTTCCAGAAGCGGTCAAATCAAGACAATTTCAAGATTGATTTGACTTCAGCCATCCTTAGTCTTCAGTAATAAAGATAGAAGGTTGATGAACCTGTGTTAATCCTGACAGATCGCCTTCCAGTGAAGGTCCAGCAGTGAGACC] [-] EMBL CD155867 [GCTATTCATTTTTATCGAAGTGGATAGAAAAGATTTAGGGTCCCAGTGATTCAAAATTAACTTATGTGTATCCCCAATAATAGGCCAATGTAAATTCCATAAAATAATAGAGCCATCAGAATAACCACAACATAATAAAGTATTGTCTAGTCTAGAAGTTTTAAGAGTATTACATGCAGGCGTAGAAAGACTACTGTTGTTGGTATATGAAGGAAATGGTAATATGAAATTCTCACATTCACCTGTAGGCGTACTAGACGCAGCTAAGAATAAGACAATAGATCCATTACTATATCCAGAAGCAACAACACGGTCATTTAAAATCCAGCTGACACACCTAGGCTGCATTTCGTTGGAAGATGAACTTTCAGGACTGATATTACTGACGCGTAACTGCGAACGAAACGAGATTTGTTTTTGGCATTTGTATAAATTTATTGGGCCAGCACTAGTTCCAACGGCTATATATCTTCCTGATCTTTGCGGAAAAGCTATGCA ] [+] EMBL CD077020 [ ATAATAAAGTATTGTCTAGTCTAGAAGTTTTAAGAGTATTACATGCAGGCGTAGAAAGACTACTGTTGTTGGTATATGAAGGAAATGGTAATATGAAATTCTCACATTCACCTGTAGGCGTACTAGACGCAGCTAAGAATAAGACAATAGATCCATTACTATATCCAGAAGCAACAACACGGTCATTTAAAATCCAGCTGACACACCTAGGCTGCATTTCGTTGGAAGATGAACTTTCAGGACTGATATTACTGACGCGTAACTGCGAACGAAACGAGATTTGTTTTTGGCATTTGTATAAATTTATTGGGCCAGCACTAGTTCCAACGGCTATATATCTTCCTGATCTTTGCGGAAAAGCTATGCAAGTTGCTGTGAAATTATGTGATAGCAAACTGAAAGTAGTTATATCTGATGTGTTTTGATCGTACACAAGATTTTTGCCAGCATACAGACGTCGAAAGAAAATAGCAGAACCAGAGTGGTCAATAACAGCTAGCTTACATGACCGGGGATCCCACTGAATCGATCGTAGCGAACACGTCAC TGTCATTTGAGGCTTGT AAGTCAAGGAAGGAGAATCAGGAATCTCCAAGTTACGGATGTC ] [-] EMBL CD078489 [ ACAGACGTCGAAAGAAAATAGCAGAACCAGAGTGGTCAATAACAGCTAGCTTACATGACCGGGGATCCCACTGAATCGATCGTAGCGAACACGTCAC TGTCATTTGAGGCTTGT AAGTCAAGGAAGGAGAATCAGGAATCTCCAAGTTACGGATGTCTGTATTTGACAATGACGGTCCAAACGCATTCTTATCATATAGTACAGACCAAAAAGAGACTGAAGAGTTTTGTACAGCAGCAAGATACATTCGTAGGTCAGTAAGAAGAGAATCCAGACTTTGTCAGGCAACAATTCAGTGGCATCGTTCAATGAAGAAGGCTGCTGAGCACTTGAAGGTCGAAGTGTCGTAAAAGGATTGGTGCGTCACCTCTGAAATTTGTAAGTTTTCCAGAAGCGGTCAAATCAAGACAATTTCAAGATTGATTTGACTTCAGCCATCCTTAGTCTTCAGTAATAAAGATAGAAGGTTGATGAACCTGTGTTAATCCTGACAGATCGCCTTCCAGTGAAGGTCCAGCAGTGAGACC] [-] EMBL BE505124 [ CACNTGNCATTTGAGNTTTGTNAANTNAAGGANGGAGAATCAGGAATCTCAAAGTTACGGATGTCTGTATTTGACAATGACGGTCCAAACGCATTCTTATCATATAGTACAGACCAAAAAGAGACTGAAGAGTTTTGTACAGCAGCAAGATACATTCGTAGGTCAGTAAGAAG ] consensusID : consensus_9570#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 414 fasta sequence [GGGGAACTAAACCTAACTTCGTCACTATTCTGTAGGCGTACTAGACGCAGCTAAGAATAAGACAATAGATCCATTACTATATCCAGAAGCAACAACACGGTCATTTAAAATCCAGCTGACACACCTAGGCTGCATTTCGTTGGAAGATGAACTTTCAGGACTGATATTACTGACGCGTAACTGCGAACGAAACGAGATTTGTTTTTGGCATTTGTATAAA-TTTA-TTGGGCCAGCACTAGTTCCAACGGCTATATATCTT-CCTGATCTTTGCGGAAAAGCTATGCAAGTTGCTGTGAAATTATGTGATAGCAAACTGAAAGTAGTTATATCTGATGTGTTTTGATCGTACACAAGATTTTTGCCAGCATACAGACGTCGAAAGAAAATAGCAGAACCAGAGTGGTCAATAACAGC] [-] EMBL CD171042 [GGGGAACTAAACCTAACTTCGTCACTATTCTGTAGGCGTACTAGACGCAGCTAAGAATAAGACAATAGATCCATTACTATATCCAGAAGCAACAACACGGTCATTTAAAATCCAGCTGACACACCTAGGCTGCATTTCGTTGGAAGATGAACTTTCAGGACTGATATTACTGACGCGTAACTGCGAACGAAACGAGATTTGTTTTTGGCATTTGTATAAA TTTA TTGGGCCAGCACTAGTTCCAACGGCTATATATCTT CCTGATCTTTGCGGAAAAGCTATGCAAGTTGCTGTGAAATTATGTGATAGCAAACTGAAAGTAGTTATATCTGATGTGTTTTGATCGTACACAAGATTTTTGCCAGCATACAGACGTCGAAAGAAAATAGCAGAACCAGAGTGGTCAATAACAGC] [+] EMBL CD064345 [ taTANANTCCAGCTGACACACCTAGGCTGC TTCGTTGGAAGATGAACTTTCAGGACTGATATTACTGACGCGTAACTGCGAACGAAACGAGATTTGTTTTTGGCATTTGTATAAACTTTACTTGGGCCAGCACTAGTTCCAACGGCTATATATCTTCCCTGATCTTTGCGGAAAA ] consensusID : consensus_9570#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence [TGGTTCTAACCGTGGCAACGGAGAAAAACGATGCTCTACAGAGATTCCTGAGGTCATGTAACTTGAATGGATTTAAAGTGAAGGTAGGTAATTTTAAGAGGCGACATGCTTGTACTCAAAGGTGCTTGGAGAAGGCAGTCATTGGAAAGGTGGGCATGTTGCGAAGTCAACTGGTGGTGGAC] [+] EMBL CD092302 [TGGTTCTAACCGTGGCAACGGAGAAAAACGATGCTCTACAGAGATTCCTGAGGTCATGTAACTTGAATGGATTTAAAGTGAAGGTAGGTAATTTTAAGAGGCGACATGCTTGTACTCAAAGGTGCTTGGAGAAGGCAGTCATTGGAAAGGTGGGCATGTTGCGAAGTCAACTGGTGGTGGAC] consensusID : consensus_9570#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence [CATGCCTGCAGGACTATAGATGATCCCCTATTTTTATTGTGTTGTTATTTCAGGAGGCGATGTACACGGACCGGAGATCGTGGGAATTGAAGTGTAAATGTGTTAGTGGGTATTGAGCGTGTTGGTTGACTGATTGAATTGTGTTAGTGGTTGTCGTTGTCATCCATCGGTTGTGTA] [+] EMBL CD166948 [CATGCCTGCAGGACTATAGATGATCCCCTATTTTTATTGTGTTGTTATTTCAGGAGGCGATGTACACGGACCGGAGATCGTGGGAATTGAAGTGTAAATGTGTTAGTGGGTATTGAGCGTGTTGGTTGACTGATTGAATTGTGTTAGTGGTTGTCGTTGTCATCCATCGGTTGTGTA] consensusID : consensus_9570#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 87 fasta sequence [ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGTGAATTCTGCTTCACAATATAGGAAGACCC] [+] EMBL BG932911 [ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGTGAATTCTGCTTCACAATATAGGAAGACCC] [+] EMBL BG930226 [ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGTGAATTCTGCTTCACAATATAGGAAGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9570#0 GCTATTCATTTTTATCGAAGTGGATAGAAAAGATTTAGGGTCCCAGTGATTCAAAATTAA 60 consensus_9570#1 ------------------------------------------------------------ consensus_9570#2 ------------------------------------------------------------ consensus_9570#4 ------------------------------------------------------------ consensus_9570#3 ------------------------------------------------------------ consensus_9570#0 CTTATGTGTATCCCCAATAATAGGCCAATGTAAATTCCATAAAATAATAGAGCCATCAGA 120 consensus_9570#1 ------------------------------------------------------------ consensus_9570#2 ------------------------------------------------------------ consensus_9570#4 ------------------------------------------------------------ consensus_9570#3 ------------------------------------------------------------ consensus_9570#0 ATAACCACAACATAATAAAGTATTGTCTAGTCTAGAAGTTTTAAGAGTATTACATGCAGG 180 consensus_9570#1 ------------------------------------------------------------ consensus_9570#2 ------------------------------------------------------------ consensus_9570#4 ------------------------------------------------------------ consensus_9570#3 ------------------------------------------------------------ consensus_9570#0 CGTAGAAAGACTACTGTTGTTGGTATATGAAGGAAATGGTAATATGAAATTCTCACATTC 240 consensus_9570#1 ------------------------------GGGGAAC--TAA-ACCTAACTTCGTCACTA 27 consensus_9570#2 ------------------------------------------------------------ consensus_9570#4 ------------------------------------------------------------ consensus_9570#3 ------------------------------------------------------------ consensus_9570#0 ACCTGTAGGCGTACTAGACGCAGCTAAGAATAAGACAATAGATCCATTACTATATCCAGA 300 consensus_9570#1 TTCTGTAGGCGTACTAGACGCAGCTAAGAATAAGACAATAGATCCATTACTATATCCAGA 87 consensus_9570#2 ------------------------------------------------------------ consensus_9570#4 ------------------------------------------------------------ consensus_9570#3 ------------------------------------------------------------ consensus_9570#0 AGCAACAACACGGTCATTTAAAATCCAGCTGACACACCTAGGCTGCATTTCGTTGGAAGA 360 consensus_9570#1 AGCAACAACACGGTCATTTAAAATCCAGCTGACACACCTAGGCTGCATTTCGTTGGAAGA 147 consensus_9570#2 ------------------------------------------------------------ consensus_9570#4 ------------------------------------------------------------ consensus_9570#3 ------------------------------------------------------------ consensus_9570#0 TGAACTTTCAGGACTGATATTACTGACGCGTAACTGCGAACGAAACGAGATTTGTTTTTG 420 consensus_9570#1 TGAACTTTCAGGACTGATATTACTGACGCGTAACTGCGAACGAAACGAGATTTGTTTTTG 207 consensus_9570#2 ------------------------------------------------------------ consensus_9570#4 ------------------------------------------------------------ consensus_9570#3 ---------------------------------------------------------CAT 3 consensus_9570#0 GCATTTGTATAAATTTATTGGGCCAGCACTAGTTCCAACGGCTATATATCTTCCTGATCT 480 consensus_9570#1 GCATTTGTATAAATTTATTGGGCCAGCACTAGTTCCAACGGCTATATATCTTCCTGATCT 267 consensus_9570#2 -----------------------------TGGTTCTAACCGTGGCA-ACGGAGAAAAACG 30 consensus_9570#4 ----------------------------------------ATGATAGGAAGAGCCGACAT 20 consensus_9570#3 GCCTGCAGGACTATAGATGATCCCCTATTTTTATTGTGTTGTTATTTCAGGAGGCGATGT 63 * consensus_9570#0 TTGCGGAAAAGCTATGCAAG---TTGCTGTGAAA-TTATGTGATAGCAAACTGA--AAGT 534 consensus_9570#1 TTGCGGAAAAGCTATGCAAG---TTGCTGTGAAA-TTATGTGATAGCAAACTGA--AAGT 321 consensus_9570#2 ATGCTCTACAGAGATTCCTG---AGGTCATGTAACTTGAATGGATTTAAAGTGA--AGGT 85 consensus_9570#4 CGAAGGATCAAAAAGCGACG---TCGCTATGAACGCTTGGTGAATTCTGCTTCACAATAT 77 consensus_9570#3 ACACGGACCGGAGATCGTGGGAATTGAAGTGTAA-ATGTGTTAGTGGGTATTGAGCGTGT 122 * * * ** * * * * * * consensus_9570#0 AGTTATATCT--GATGTGTTTTGATCGTACACAAGATTTTTGCCAGCATACAGACGTCGA 592 consensus_9570#1 AGTTATATCT--GATGTGTTTTGATCGTACACAAGATTTTTGCCAGCATACAGACGTCGA 379 consensus_9570#2 AGGTAATTTTAAGAGGCGACATGCTTGTACTCAAAGGTGCTTGGAGAAGGCAGTCATTGG 145 consensus_9570#4 AGGAAGACCC-------------------------------------------------- 87 consensus_9570#3 TGGTTGACT--------GATTGAATTGTGTTAGTGGTTGTCGTTGTCATCCATCGGTTGT 174 * consensus_9570#0 AAGAAAATAGCAGAACCAGAGT-GGTCAATAACAGCTAGCTTACATGACCGGGGATCCCA 651 consensus_9570#1 AAGAAAATAGCAGAACCAGAGT-GGTCAATAACAGC------------------------ 414 consensus_9570#2 AAAGGTGGGCATGTTGCGAAGTCAACTGGTGGTGGAC----------------------- 182 consensus_9570#4 ------------------------------------------------------------ consensus_9570#3 GTA--------------------------------------------------------- 177 consensus_9570#0 CTGAATCGATCGTAGCGAACACGTCACTGTCATTTGAGGCTTGTAAGTCAAGGAAGGAGA 711 consensus_9570#1 ------------------------------------------------------------ consensus_9570#2 ------------------------------------------------------------ consensus_9570#4 ------------------------------------------------------------ consensus_9570#3 ------------------------------------------------------------ consensus_9570#0 ATCAGGAATCTCCAAGTTACGGATGTCTGTATTTGACAATGACGGTCCAAACGCATTCTT 771 consensus_9570#1 ------------------------------------------------------------ consensus_9570#2 ------------------------------------------------------------ consensus_9570#4 ------------------------------------------------------------ consensus_9570#3 ------------------------------------------------------------ consensus_9570#0 ATCATATAGTACAGACCAAAAAGAGACTGAAGAGTTTTGTACAGCAGCAAGATACATTCG 831 consensus_9570#1 ------------------------------------------------------------ consensus_9570#2 ------------------------------------------------------------ consensus_9570#4 ------------------------------------------------------------ consensus_9570#3 ------------------------------------------------------------ consensus_9570#0 TAGGTCAGTAAGAAGAGAATCCAGACTTTGTCAGGCAACAATTCAGTGGCATCGTTCAAT 891 consensus_9570#1 ------------------------------------------------------------ consensus_9570#2 ------------------------------------------------------------ consensus_9570#4 ------------------------------------------------------------ consensus_9570#3 ------------------------------------------------------------ consensus_9570#0 GAAGAAGGCTGCTGAGCACTTGAAGGTCGAAGTGTCGTAAAAGGATTGGTGCGTCACCTC 951 consensus_9570#1 ------------------------------------------------------------ consensus_9570#2 ------------------------------------------------------------ consensus_9570#4 ------------------------------------------------------------ consensus_9570#3 ------------------------------------------------------------ consensus_9570#0 TGAAATTTGTAAGTTTTCCAGAAGCGGTCAAATCAAGACAATTTCAAGATTGATTTGACT 1011 consensus_9570#1 ------------------------------------------------------------ consensus_9570#2 ------------------------------------------------------------ consensus_9570#4 ------------------------------------------------------------ consensus_9570#3 ------------------------------------------------------------ consensus_9570#0 TCAGCCATCCTTAGTCTTCAGTAATAAAGATAGAAGGTTGATGAACCTGTGTTAATCCTG 1071 consensus_9570#1 ------------------------------------------------------------ consensus_9570#2 ------------------------------------------------------------ consensus_9570#4 ------------------------------------------------------------ consensus_9570#3 ------------------------------------------------------------ consensus_9570#0 ACAGATCGCCTTCCAGTGAAGGTCCAGCAGTGAGACC 1108 consensus_9570#1 ------------------------------------- consensus_9570#2 ------------------------------------- consensus_9570#4 ------------------------------------- consensus_9570#3 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||