These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9576#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1066 fasta sequence [AAGTGCCGATAATATAGTGCTCTCAAATCAAAATGGCGCGCGTCGTTGCAGTATGGTAGGAAATTAACACGACCGTAATAGATTGCATTTTAACATGTCATTCAGTCGTGTAGTACGTCTCGGCTGTTGCATCACTGGTACAGCTTTATTCGGAGCCAAAGCGGCATGGTCTGCTGATTGGAGTAGAGGTGATCAAAAGTTACCATTTTTTGACCAGTTGAAAAGTTTAGCGAACACCTTCAATAAAATATTTCCATCAATACTAAGTGCTCGTGCTATCTGTAGTGAAAATGTCAGTATACAACCATGGGACTGGGACTGGGATGGGAGAAATCCCTCTAATTTTCGGACAGATTCGTCTTTACAAGGTGAAATAGTGACACCAAAATGTACACGGCACCTTCTGTTTATTCGTCATGGCCAATATTATTATGCAAAAGAAGATTCTGACTGCCACTTGACA-GGGCTTGGGCGCCAGCAGTTGGACTGTACTGGAAAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTATTCGACAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGTTCAAGCAGAACCCTCAGA-TGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCTCGCATATTACAAACCCACACCAAAAGATATAGAA-GAAGATGGTTCCCGCATTGAACTTGCGTTCC-GAAGACACATACACCGTGCAGATGTAGGACAGGAAGCCGACACGTATGAAGTGTTTGTGTGCCATGCAAATGTTATTCGCTATTTTGTTTGTAGAGCTCTACAGTTTCCACCTGAAGCTTGGATAAGATTTTCCCTCGATCACGGCAGTATAACATGGCTTGTCATCCGGCCTGACGGGCGTGTTACATTAAGATGGTTAGGAAACTCAGGACATATGCCCCCTGAACTTATTTCCGTCCAGTAAATTTTTTGGGACTTCTCTTCA-TTGTACAGTGTATATTACGTGTATTTAAAGTTACTTGTTTTATAATTAATTTATTGTAAAATTAAAAAAAAAAAA] [+] EMBL CD142187 [AAGTGCCGATAATATAGTGCTCTCAAATCAAAATGGCGCGCGTCGTTGCAGTATGGTAGGAAATTAACACGACCGTAATAGATTGCATTTTAACATGTCATTCAGTCGTGTAGTACGTCTCGGCTGTTGCATCACTGGTACAGCTTTATTCGGAGCCAAAGCGGCATGGTCTGCTGATTGGAGTAGAGGTGATCAAAAGTTACCATTTTTTGACCAGTTGAAAAGTTTAGCGAACACCTTCAATAAAATATTTCCATCAATACTAAGTGCTCGTGCTATCTGTAGTG AAATGTCAGT ] [+] EMBL CD078667 [ CGCGTCGTTGCAGTATGGTAGGAAATTAACACGACCGTAATAGATTGCATTTTAACATGTCATTCAGTCGTGTAGTACGTCTCGGCTGTTGCATCACTGGTACAGCTTTATTCGGAGCCAAAGCGGCATGGTCTGCTGATTGGATTAGAGGTGATCAAAAGTTACCATTTTTTGACCAGTTGAAAAGTTTAGCGAACACCTTCAATAAAATATTTCCATCAATACTAAGTGCTCGTGCTATCTGTAGTGAAAATGTCAGTATACAACCATGGGACTGGGACTGGGATGGGAGAAATCCCTCTAATTTTCGGACAGATTCGTCTTTACAAGGTGAAATAGTGACACCAAAATGTACACGGCACCTTCTGTTTATTCGTCATGGCCAATATTATTATGCAAAAGAAGATTCTGACTGCCACTTGACA GGGCTTGGGCGCCAGCAGTTGGACTGTACTGGAAAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTATTCGACAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGTTCAAGCAGAACCCTCAGA TGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCTCGCATATT ] [+] EMBL CD081289 [ CATCACTGGTACAGCTTTATTCGGAGCCAAAGCGGCATGGTCTGCTGATTGGAGTAGAGGTGATCAAAAGTTACCATTTTTTGACCAGTTGAAAAGTTTAGCGAACACCTTCAATAAAATATTTCCATCAATACTAAGTGCTCGTGCTATCTGTAGTGAAAATGTCAGTATACAACCATGGGACTGGGACTGGGATGGGAGAAATCCCTCTAATTTTCGGACAGATTCGTCTTTACAAGGTGAAATAGTGACACCAAAATGTACACGGCACCTTCTGTTTATTCGTCATGGCCAATATTATTATGCAAAAGAAGATTCTGACTGCCACTTGACA GGGCTTGGGCGCCAGCAGTTGGACTGTACTGGAAAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTATTCGATAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGTTCAAGCAGAACCCTCAGA TGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCTCGCATATTACAAACCCACACCAAAAGATATAGAA GAAGATGGTTCCCGCATTGAACTTGCGTTCC GAAGACACATACACCGTGCAGATGTANGACAGGAAGCCGACACGTATGAAGTGTTTGTGTGCCATGCAAATGT ] [+] EMBL CD190474 [ ATCTGTAGTGAAAATGTCAGTATACAACCATGGGACTGGGACTGGGATGGGAGAAATCCCTCTAATTTTCGGACAGATTCGTCTTTACAAGGTGAAATAGTGACACCAAAATGTACACAGCACCTTCTGTTTATTCGTCATGGCCAATATTATTATGCAAAAGAAGATTCTGACTGCCACTTGACA GGGCTTGGGCGCCAGCAGTTGGACTGTACTGGAAAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTATTCGACAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGTTCAGGCAGAACCCTCAGA TGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCTCGCATATTACAAACCCACACCAAAAGATATAGAA GAAGATGGTTCCCGCATTGAACTTGCGTTCC GAAGACACATACACCGTGCA ] [-] EMBL CD075118 [ TGACAGGGGCTTGGGCGCCAGCAGTTGGACTGTACTGGANAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTATTCGATAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGTTCAAGCAGAACCCTCAGANTGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCTCGCATATTACAAACCCACACCAAAAGATATAGAA GAAGATGGTTCCCGCATTGAACTTGCGTTCC GAAGACACATACACCGTGCAGATGTAGGACAGGAAGCCGACACGTATGAAGTGTTTGTGTGCCATGCAAATGTTATTCGCTATTTTGTTTGTAGAGCTCTACAGTTTCCACCTGAAGCTTGGATAAGATTTTCCCTCGATCACGGCAGTATAACATGGCTTGTCATCCGGCCTGACGGGCGTGTTACATTAAGATGGTTAGGAAACTCAGGACATATGCCCCCTGAACTTATTTCCGTCCAGTAAATTTTTTGGGACTTCTCTTCA TTGTACAGTGTATATTACGTGTATTTAAAGTTACTTGTTTTATAATTA ] [-] EMBL AI395552 [ ATATAGAAGGAAGATGGTTCCCGCATTGAACTTGCGTTCCGGAAGACACATACACCGTGCAGATGTAGGACAGGAAGCCGACACGTATGAAGTGTTTGTGTGCCATGCAAATGTTATTCGCTATTTTGTTTGTAGAGCTCTACAGTTTCCACCTGAAGCTTGGATAAGATTTTCCCTCGATCACGGCAGTATAACATGGCTTGTCATCCGGCCTGACGGGCGTGTTACATTAAGATGGTTAGGAAACTCAGGACATATGCCCCCTGAACTTATTTCCGTCCAGTAAATTTTTTGGGACTTCTGGGGACTTGCACAGTGTATATTACGTGTATTTAAAGTTTCTTGTTTTATAATTAATTTATTGTAAAATTAAAAAAAAAAAA] consensusID : consensus_9576#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 581 fasta sequence [TGACAGGGCTTGGGCGCCAGCAGTTGGACTGTACTGGAAAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTATTCGACAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGTTCAAGCAGAACCCTC-AGATGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCTCGCATATTACAAACCCACACCAAAAGATATAGAAGAAGATGGTTCCCGCATTGAACTTGCGTTCCGAAGACACATACACCGTGCAGATGTAGGACAGGAAGCCGACAC---------AGCTCTACAGTTTCCACCTGAAGCTTGGATAAGATTTTCCCTCGATCACGGCAGTATAACATGGCTTGTCATCCGGCCTGACGGGCGTGTTACATTAAGATGGTTAGGAAACTCAGGACATATGCCCCCTGAACTTATTTCCGTCCAGTAAATTTTTTGGGACTTCTC-TTCATTGTACAGTGTATATTACGTGTATTTAAAGTTTCTTGTTTTATAATTAATTTCTTGTAAAATTAGATACTTTTTTCAAATTAAAAAAAAAAAAAAAAAA] [-] EMBL CD073131 [TGACAGGGCTTGGGCGCCAGCAGTTGGACTGTACTGGAAAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTATTCGACAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGTTCAAGCAGAACCCTC AGATGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCTCGCATATTACAAACCCACACCAAAAGATATAGAAGAAGATGGTTCCCGCATTGAACTTGCGTTCCGAAGACACATACACCGTGCAGATGTAGGACAGGAAGCCGACAC AGCTCTACAGTTTCCACCTGAAGCTTGGATAAGATTTTCCCTCGATCACGGCAGTATAACATGGCTTGTCATCCGGCCTGACGGGCGTGTTACATTAAGATGGTTAGGAAACTCAGGACATATGCCCCCTGAACTTATTTCCGTCCAGTAAATTTTTTGGGACTTCTC TTCATTGTACAGTGTATATTACGTGTATTTAAAGTTACTTGTTTTATAATTAATTTCT ] [-] EMBL CD190919 [ AGTTGGACTGTACTGGAAAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTATTCGACAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGTTCAAGCAGAACCCTC AGATGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCTCGCATATTACAAACCCACACCAAAAGATATAGAAGAAGATGGTTCCCGCATTGAACTTGCGTTCCGAAGACACATACACCGTGCAGATG ] [-] EMBL AI395534 [ ggggTGTTGAATCAGNTGAGTT GTGTTAAATCACTTTCCCAATGTTCAAGCAGAA CCTCAAGATGTTATAGGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCTCGCATATTACAAACCCACACCAAAAGATATAGAAGAAGATGGTTCCCGCATTGAACTTGCGTTCCGAAGACACATACACCGTGCAGATGTAGGACAGGAAGCCGACAC AGCTCTACAGTTTCCACCTGAAGCTTGGATAAGATTTTCCCTCGATCACGGCAGTATAACATGGCTTGTCATCCGGCCTGACGGGCGTGTTACATTAAGATGGTTAGGAAACTCAGGACATATGCCCCCTGAACTTATTTCCGTCCAGTAAATTTTTTGGGACTTCTC TTCATTGTACAGTGTATATTACGTGTATTTAAAGTTTCTTGTTTTATAATTAATTTCTTGTAAAATTAGATACTTTTTTCAAATTAAAAAAAAAAAAAAAAAA] [-] EMBL AI394983 [ TGGTTCCCGCATTGAACTTGTGTTCGGAGGACACGTACCCCGTGCAGATGTAGGACAGGAAGTCGACACGTATGAAGTAGCTCTACAGTTTCCACCTGAAGCTTGGATAAGATTTTCCATCGATCACGGCAGTATAACATGGCTTGTCATCCGGCCTGACGGGCGTGTTACATTAAGATGGTTAGGAAACTCAGGACATATGCCCCCTGAACTTATTTCCGTCCAGTAAATTTCTTGGGACTTCTCGTTCATTGTACAGTGTATATTACGTGTATTTAAAGTTTCTTGTTTTATAATTAATTTCTTGTAAAAaaaaaaaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9576#0 AAGTGCCGATAATATAGTGCTCTCAAATCAAAATGGCGCGCGTCGTTGCAGTATGGTAGG 60 consensus_9576#1 ------------------------------------------------------------ consensus_9576#0 AAATTAACACGACCGTAATAGATTGCATTTTAACATGTCATTCAGTCGTGTAGTACGTCT 120 consensus_9576#1 ------------------------------------------------------------ consensus_9576#0 CGGCTGTTGCATCACTGGTACAGCTTTATTCGGAGCCAAAGCGGCATGGTCTGCTGATTG 180 consensus_9576#1 ------------------------------------------------------------ consensus_9576#0 GAGTAGAGGTGATCAAAAGTTACCATTTTTTGACCAGTTGAAAAGTTTAGCGAACACCTT 240 consensus_9576#1 ------------------------------------------------------------ consensus_9576#0 CAATAAAATATTTCCATCAATACTAAGTGCTCGTGCTATCTGTAGTGAAAATGTCAGTAT 300 consensus_9576#1 ------------------------------------------------------------ consensus_9576#0 ACAACCATGGGACTGGGACTGGGATGGGAGAAATCCCTCTAATTTTCGGACAGATTCGTC 360 consensus_9576#1 ------------------------------------------------------------ consensus_9576#0 TTTACAAGGTGAAATAGTGACACCAAAATGTACACGGCACCTTCTGTTTATTCGTCATGG 420 consensus_9576#1 ------------------------------------------------------------ consensus_9576#0 CCAATATTATTATGCAAAAGAAGATTCTGACTGCCACTTGACAGGGCTTGGGCGCCAGCA 480 consensus_9576#1 --------------------------------------TGACAGGGCTTGGGCGCCAGCA 22 ********************** consensus_9576#0 GTTGGACTGTACTGGAAAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTA 540 consensus_9576#1 GTTGGACTGTACTGGAAAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTA 82 ************************************************************ consensus_9576#0 TTCGACAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGT 600 consensus_9576#1 TTCGACAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGT 142 ************************************************************ consensus_9576#0 TCAAGCAGAACCCTCAGATGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCT 660 consensus_9576#1 TCAAGCAGAACCCTCAGATGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCT 202 ************************************************************ consensus_9576#0 CGCATATTACAAACCCACACCAAAAGATATAGAAGAAGATGGTTCCCGCATTGAACTTGC 720 consensus_9576#1 CGCATATTACAAACCCACACCAAAAGATATAGAAGAAGATGGTTCCCGCATTGAACTTGC 262 ************************************************************ consensus_9576#0 GTTCCGAAGACACATACACCGTGCAGATGTAGGACAGGAAGCCGACACGTATGAAGTGTT 780 consensus_9576#1 GTTCCGAAGACACATACACCGTGCAGATGTAGGACAGGAAGCCGACAC------------ 310 ************************************************ consensus_9576#0 TGTGTGCCATGCAAATGTTATTCGCTATTTTGTTTGTAGAGCTCTACAGTTTCCACCTGA 840 consensus_9576#1 ---------------------------------------AGCTCTACAGTTTCCACCTGA 331 ********************* consensus_9576#0 AGCTTGGATAAGATTTTCCCTCGATCACGGCAGTATAACATGGCTTGTCATCCGGCCTGA 900 consensus_9576#1 AGCTTGGATAAGATTTTCCCTCGATCACGGCAGTATAACATGGCTTGTCATCCGGCCTGA 391 ************************************************************ consensus_9576#0 CGGGCGTGTTACATTAAGATGGTTAGGAAACTCAGGACATATGCCCCCTGAACTTATTTC 960 consensus_9576#1 CGGGCGTGTTACATTAAGATGGTTAGGAAACTCAGGACATATGCCCCCTGAACTTATTTC 451 ************************************************************ consensus_9576#0 CGTCCAGTAAATTTTTTGGGACTTCTCTTCATTGTACAGTGTATATTACGTGTATTTAAA 1020 consensus_9576#1 CGTCCAGTAAATTTTTTGGGACTTCTCTTCATTGTACAGTGTATATTACGTGTATTTAAA 511 ************************************************************ consensus_9576#0 GTTACTTGTTTTATAATTAATTTATTGTAAAATTAAA---------------AAAAAAAA 1065 consensus_9576#1 GTTTCTTGTTTTATAATTAATTTCTTGTAAAATTAGATACTTTTTTCAAATTAAAAAAAA 571 *** ******************* *********** * ******** consensus_9576#0 A--------- 1066 consensus_9576#1 AAAAAAAAAA 581 * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||